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MEME - Motif discovery tool
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MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
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PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= --none--
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
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COMMAND LINE SUMMARY
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This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -nsites 27 common/adh.s -oc results/meme6 -mod anr -protein -nmotifs 2 -objfun classic -minw 8 -nostatus -mpi 

model:  mod=           anr    nmotifs=         2    evt=           inf
objective function:           em=       E-value of product of p-values
                              starts=   E-value of product of p-values
width:  minw=            8    maxw=           50
nsites: minsites=       27    maxsites=       27    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=           49975    maxiter=        50
        distance=    1e-05
trim:   wg=             11    ws=              1    endgaps=       yes
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=          0
        searchsize=   9996    norand=         no    csites=       1000
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 
L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.0095 Y 0.027 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
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MOTIF SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1	width =  40  sites =  27  llr = 1337  E-value = 7.1e-198
********************************************************************************
--------------------------------------------------------------------------------
	Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  22:162:56:12:1:216:::4:::::1:2:3::2::121
pos.-specific     C  :::1:::::::::::::::::::::::::1::::::::::
probability       D  :::::::::::::::::::3::::::::::::::::1:3:
matrix            E  ::::::::::1:::3::::5::11:::::::1::::::::
                  F  :::::::31:::3:::::::::::::::::::::11::::
                  G  :1:1:::13::4:::1:1::111:6::::1:1:7:::::1
                  H  ::::::::::::::1::::::::1:::::::1:1::::::
                  I  :::::::::11:::::::::1::::6:1::3:::12:::1
                  K  ::::::a:::1:::2:::1::121::1:::::::::1:::
                  L  :::::::::31:6:::5:215::1:::::11:::::1::1
                  M  ::::1::::1:1:1::3:1:1:::::::::::::::::14
                  N  :1:::::::::1::::::::::::3:::5::1::1:1:1:
                  P  11::::::::::::::::::::4:::::::::9:2:::1:
                  Q  ::::::::::::::1::11:::::::::::::::::::::
                  R  ::::::::::1:::3::21::11:::4:::::::::1:::
                  S  31:427::1:11:213::::::::::::11:1::::11::
                  T  2::1:1::::1::4:2::::::11::1:1::1:::1:611
                  V  12:::::::41::1::::1:1::::3:7124:::141:::
                  W  ::::::::::::::::::::::::::::::::::::::::
                  Y  ::a:::::::::::::::::1::2:::::::1::::::::

         bits    6.7                                         
                 6.0                                         
                 5.4                                         
                 4.7   *                                     
Relative         4.0   *   *                                 
Entropy          3.4   *   *                         *       
(71.4 bits)      2.7   *  **     *            *      *       
                 2.0   *  ****   *** ** *    ** ** * **   *  
                 1.3 * ******** ******* ********** * ** * ***
                 0.7 ****************************************
                 0.0 ----------------------------------------

Multilevel           SAYSASKAAVXGLTESLALELAPXGIRVNVVAPGXVXTDM
consensus            A   SA FGL  FSR M  D  K NV    I    I    
sequence                                                     
                                                             
                                                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                              Site                
-------------             ----- ---------            ----------------------------------------
BUDC_KLETE                  150  5.30e-30 QAGHVGNPEL AVYSSSKFAVRGLTQTAARDLAPLGITVNGFCPGIVKTPM WAEIDRQCRK
NODG_RHIME                  150  1.93e-29 VAGAIGNPGQ TNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAM TDKLNHKQKE
FIXR_BRAJA                  187  4.48e-29 AGSRVHPFAG SAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDM LSPDAEARVV
YRTP_BACSU                  153  5.05e-27 TAGQRGAAVT SAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDM SIELNLTDGN
DHGB_BACME                  158  1.35e-26 HEWKIPWPLF VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI NAEKFADPEQ
AP27_MOUSE                  147  3.99e-26 MVAHVTFPNL ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM GKKVSADPEF
2BHD_STREX                  150  1.02e-25 AAGLMGLALT SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM TAETGIRQGE
HDHA_ECOLI                  157  7.91e-25 MAAENKNINM TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA LKSVITPEIE
YURA_MYXXA                  158  2.64e-24 SLAGFRGLPA TRYSASKAFLSTFMESLRVDLRGTGVRVTCIYPGFVKSEL TATNNFPMPF
BA72_EUBSP                  155  9.52e-24 VTGIFGSLSG VGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDM TNGNPPEIME
DHMA_FLAS1                  163  2.99e-23 VNSFMAEPEA AAYVAAKGGVAMLTRAMAVDLARHGILVNMIAPGPVDVTG NNTGYSEPRL
DHB2_HUMAN                  230  5.51e-23 MGGGAPMERL ASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNI AGTSDKWEKL
ENTA_ECOLI                  142  7.46e-23 DAAHTPRIGM SAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDM QRTLWVSDDA
DHES_HUMAN                  153  1.66e-22 VGGLMGLPFN DVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF MEKVLGSPEE
HDE_CANTR                   465  3.64e-22 TSGIYGNFGQ ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAETAMT LTIFREQDKN
RIDH_KLEAE                  158  7.15e-22 IAGVVPVIWE PVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTAL LDDWPKAKMD
FVT1_HUMAN                  184  3.23e-21 QAGQLGLFGF TAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPG FAEENRTKPL
BDH_HUMAN                   206  5.13e-21 MLGRMANPAR SPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAAT SLYNPESIQA
HMTR_LEIMA                  191  1.53e-20 AMTNQPLLGY TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD DMPPAVWEGH
DHB3_HUMAN                  196  2.61e-20 GIALFPWPLY SMYSASKAFVCAFSKALQEEYKAKEVIIQVLTPYAVSTAM TKYLNTNVIT
GUTD_ECOLI                  152  2.61e-20 KSGKVGSKHN SGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSP MFQSLLPQYA
CSGA_MYXXA                   86  3.40e-20 SLAANTDGGA YAYRMSKAALNMAVRSMSTDLRPEGFVTVLLHPGWVQTDM GGPDATLPAP
HDE_CANTR                   161  2.69e-19 PAGLYGNFGQ ANYASAKSALLGFAETLAKEGAKYNIKANAIAPLARSRMT ESILPPPMLE
LIGD_PSEPA                  155  7.33e-19 LGGFMGSALA GPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIKSNI AEASRLRPAK
ADH_DROME                   150  5.98e-18 VTGFNAIYQV PVYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTL VHKFNSWLDV
FABI_ECOLI                  157  1.01e-16 LGAERAIPNY NVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLA ASGIKDFRKM
3BHD_COMTE                  149  2.27e-16 VSSWLPIEQY AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYT PMMQASLPKG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
BUDC_KLETE                        5.3e-30  149_[1]_52
NODG_RHIME                        1.9e-29  149_[1]_56
FIXR_BRAJA                        4.5e-29  186_[1]_52
YRTP_BACSU                          5e-27  152_[1]_46
DHGB_BACME                        1.4e-26  157_[1]_65
AP27_MOUSE                          4e-26  146_[1]_58
2BHD_STREX                          1e-25  149_[1]_66
HDHA_ECOLI                        7.9e-25  156_[1]_59
YURA_MYXXA                        2.6e-24  157_[1]_61
BA72_EUBSP                        9.5e-24  154_[1]_55
DHMA_FLAS1                          3e-23  162_[1]_68
DHB2_HUMAN                        5.5e-23  229_[1]_118
ENTA_ECOLI                        7.5e-23  141_[1]_67
DHES_HUMAN                        1.7e-22  152_[1]_135
HDE_CANTR                         2.7e-19  160_[1]_264_[1]_402
RIDH_KLEAE                        7.1e-22  157_[1]_52
FVT1_HUMAN                        3.2e-21  183_[1]_109
BDH_HUMAN                         5.1e-21  205_[1]_98
HMTR_LEIMA                        1.5e-20  190_[1]_57
DHB3_HUMAN                        2.6e-20  195_[1]_75
GUTD_ECOLI                        2.6e-20  151_[1]_68
CSGA_MYXXA                        3.4e-20  85_[1]_41
LIGD_PSEPA                        7.3e-19  154_[1]_111
ADH_DROME                           6e-18  149_[1]_66
FABI_ECOLI                          1e-16  156_[1]_66
3BHD_COMTE                        2.3e-16  148_[1]_65
--------------------------------------------------------------------------------

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	Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM width=40 seqs=27
BUDC_KLETE               (  150) AVYSSSKFAVRGLTQTAARDLAPLGITVNGFCPGIVKTPM  1 
NODG_RHIME               (  150) TNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAM  1 
FIXR_BRAJA               (  187) SAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDM  1 
YRTP_BACSU               (  153) SAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDM  1 
DHGB_BACME               (  158) VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI  1 
AP27_MOUSE               (  147) ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDM  1 
2BHD_STREX               (  150) SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM  1 
HDHA_ECOLI               (  157) TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA  1 
YURA_MYXXA               (  158) TRYSASKAFLSTFMESLRVDLRGTGVRVTCIYPGFVKSEL  1 
BA72_EUBSP               (  155) VGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDM  1 
DHMA_FLAS1               (  163) AAYVAAKGGVAMLTRAMAVDLARHGILVNMIAPGPVDVTG  1 
DHB2_HUMAN               (  230) ASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNI  1 
ENTA_ECOLI               (  142) SAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDM  1 
DHES_HUMAN               (  153) DVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF  1 
HDE_CANTR                (  465) ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHAETAMT  1 
RIDH_KLEAE               (  158) PVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTAL  1 
FVT1_HUMAN               (  184) TAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPG  1 
BDH_HUMAN                (  206) SPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAAT  1 
HMTR_LEIMA               (  191) TIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD  1 
DHB3_HUMAN               (  196) SMYSASKAFVCAFSKALQEEYKAKEVIIQVLTPYAVSTAM  1 
GUTD_ECOLI               (  152) SGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSP  1 
CSGA_MYXXA               (   86) YAYRMSKAALNMAVRSMSTDLRPEGFVTVLLHPGWVQTDM  1 
HDE_CANTR                (  161) ANYASAKSALLGFAETLAKEGAKYNIKANAIAPLARSRMT  1 
LIGD_PSEPA               (  155) GPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIKSNI  1 
ADH_DROME                (  150) PVYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTL  1 
FABI_ECOLI               (  157) NVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLA  1 
3BHD_COMTE               (  149) AGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 40 n= 8708 bayes= 8.32876 E= 7.1e-198 
    78   -254    -34   -147   -302   -131   -152    -62   -129   -290   -232      1     61    -99   -186    185    152    -28   -297     28 
    81   -243   -227   -157   -281      8     94    -51   -139   -266     37    128     64   -107    -24     71    -38     94   -286   -249 
  -711   -486   -694   -703   -166   -715   -301   -539   -647   -481     41   -552   -647   -523   -596   -604   -622   -594   -211    511 
    43    306   -504   -476   -498     62   -432   -491   -454   -513   -448   -394    -20   -394    -49    267     46   -116   -488   -494 
   256    -55   -380   -333   -306   -147   -314   -126   -333   -176     43   -337   -422   -301   -338    102   -102   -185   -297   -344 
    95   -245   -557   -576   -542   -399   -493   -565   -545   -580   -503   -412   -444   -465   -520    334     99   -480   -520   -543 
  -533   -410   -566   -527   -610   -595   -434   -517    421   -585   -521   -447   -518   -440   -162   -528   -491   -610   -463   -541 
   220   -248   -599   -590    275     68   -499   -547   -598   -563   -499   -487   -467   -485   -561    -51   -345   -448    186   -451 
   239   -237   -591   -579     94    144   -519   -558   -591   -571   -501   -484   -464   -483   -556     31   -340   -438   -530   -571 
  -130   -171   -475   -398   -208   -136   -282     57   -364    156    190   -353   -386   -300   -360    -71   -226    214   -249   -239 
   -53    131   -189    132   -325   -337   -130     69     67      6   -251      7   -276     65    104     73     36    -33   -305   -255 
    60   -248   -257   -204   -307    196     93   -262   -187   -112    221     79   -331   -154   -241     23    -43   -277   -315   -282 
  -173   -330   -615   -533    276   -624   -424   -195   -507    272     54    -41   -502   -399   -478   -487   -408   -293   -340   -350 
   -21    133   -456   -467   -397   -464   -370   -319   -397   -404    113   -289   -426   -333   -405    161    301     55   -392   -421 
  -270   -318    -27    205   -360   -358    184   -359    174   -128   -279   -170   -296    135    217     25   -210   -352   -329   -279 
    25    108   -272    -69   -303    -79   -207   -279   -194   -145   -247    -26   -309   -167   -237    266    150   -134   -303     -3 
    27   -206   -509   -431   -216   -478   -316   -150   -399    230    304   -391   -416   -327   -391   -333    -51    -66   -275     36 
   247   -121   -386   -331   -369    -59   -312   -355   -274   -366      0   -332   -420     83    135    -44   -258   -256   -352   -383 
  -258   -242   -229    -22     -7   -359     94    -50     59    104    124     -1   -299    178    102   -191    -38     65   -285     33 
  -149   -618    228    320   -630   -136   -348   -540   -273    -46   -472   -336   -409     51   -401    -78   -391   -503   -597   -523 
  -137    143   -475   -397   -202    -52   -284     52   -364    229    134   -357   -384   -295   -357   -299   -233     45   -250    177 
   162   -275   -191     -9   -329     43   -132    -74     66   -127   -254   -154    -25    -74    138    -38   -189   -317   -307     27 
  -124   -305   -201     52   -347    -47   -141    -76    192   -335   -271   -164    293     62     56   -177     33   -342   -322   -272 
  -246   -283    -28     53     -1   -337    271   -330    140      3   -253      5   -273     63    -17    -40     33   -325    161    254 
  -424   -419   -237    -56   -544    268   -256   -553    -25   -542   -487    248   -443     29    -32   -290   -365   -549   -465   -431 
  -434   -297   -500   -488    -38   -581   -440    343   -448   -152   -181   -442   -510   -427   -487   -433   -343    169   -377     -6 
  -124   -253   -237   -165   -292   -130     95    -53    141   -110   -223   -191   -306   -111    289   -199    121    -97   -294     32 
  -107     34   -358   -323   -278   -437   -259     51   -331   -167   -221   -347   -313   -303   -306   -312   -104    314   -337   -381 
  -131   -293   -188   -131   -336   -136     91   -335   -112   -332   -265    339   -283     55    -26     99     26    -44   -308     19 
    61    242   -466   -389   -205     50   -276     -9   -356     -8     57    -24   -381   -292   -353    104    -40    134   -245   -235 
  -151    129   -467   -409     -7   -463   -310    267   -374     58   -147    -44   -406   -320   -379   -316   -245    191   -274   -260 
    99    130   -186     56   -330    -45    181   -331    -98   -126     28     81   -274     66   -160     73     83   -325   -307    118 
  -151    105   -363   -335   -415   -434   -308   -106   -314   -162   -394   -363    433   -265   -346   -265   -306   -402   -438   -442 
  -189   -322   -302   -362   -470    314     97   -486   -345   -225   -434   -258   -107   -358   -350   -129   -145   -474   -364    -55 
    58   -208    -45    -38     88   -132   -194     40   -192    -91     46    126    191   -156   -239    -55    -39     -8    170   -243 
  -278   -165    -68    -73     89   -432   -270    182   -342    -76   -152   -339   -372   -283    -55    -75    119    210   -251   -242 
  -119   -296     98     -5   -333   -127     98    -74    111     42   -257     82   -273     67    104     28    -36    -35   -308     29 
   -94   -230   -409   -430   -401   -511   -338    -87    -83   -164   -292   -238   -414   -292    -79    108    346   -131   -379   -421 
    55   -286    208     -7   -323   -338   -132   -316   -103   -124    118     81    157    -74   -164    -39     36   -113   -305     29 
   -54   -168    -62   -384     13    -45   -274    102   -352     36    354   -344    -27   -289   -351   -287    125   -162   -245   -235 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 40 nsites= 27 E= 7.1e-198 
 0.222222  0.000000  0.037037  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.074074  0.000000  0.000000  0.259259  0.185185  0.074074  0.000000  0.037037 
 0.222222  0.000000  0.000000  0.000000  0.000000  0.111111  0.037037  0.037037  0.000000  0.000000  0.037037  0.111111  0.074074  0.000000  0.037037  0.111111  0.037037  0.185185  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.962963 
 0.148148  0.111111  0.000000  0.000000  0.000000  0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.407407  0.074074  0.037037  0.000000  0.000000 
 0.555556  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.037037  0.074074  0.000000  0.000000  0.000000  0.000000  0.222222  0.037037  0.000000  0.000000  0.000000 
 0.222222  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.666667  0.111111  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.518519  0.000000  0.000000  0.000000  0.259259  0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.037037  0.000000 
 0.592593  0.000000  0.000000  0.000000  0.074074  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.074074  0.000000  0.296296  0.111111  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.407407  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.148148  0.000000  0.000000  0.000000  0.111111  0.074074  0.111111  0.000000  0.037037  0.000000  0.037037  0.111111  0.111111  0.074074  0.074074  0.000000  0.000000 
 0.185185  0.000000  0.000000  0.000000  0.000000  0.407407  0.037037  0.000000  0.000000  0.037037  0.148148  0.074074  0.000000  0.000000  0.000000  0.074074  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.296296  0.000000  0.000000  0.000000  0.000000  0.592593  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.111111  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.222222  0.407407  0.148148  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.259259  0.000000  0.000000  0.074074  0.000000  0.185185  0.037037  0.000000  0.000000  0.000000  0.074074  0.259259  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.185185  0.037037  0.000000  0.037037  0.000000  0.074074  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000  0.333333  0.185185  0.037037  0.000000  0.037037 
 0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.481481  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.037037 
 0.592593  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.074074  0.185185  0.037037  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.037037  0.037037  0.074074  0.222222  0.074074  0.037037  0.000000  0.111111  0.111111  0.000000  0.037037  0.148148  0.000000  0.037037 
 0.037037  0.000000  0.259259  0.518519  0.000000  0.037037  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.037037  0.000000  0.000000  0.000000  0.074074  0.000000  0.074074  0.000000  0.481481  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.111111 
 0.407407  0.000000  0.000000  0.037037  0.000000  0.148148  0.000000  0.037037  0.074074  0.037037  0.000000  0.000000  0.037037  0.000000  0.148148  0.037037  0.000000  0.000000  0.000000  0.037037 
 0.037037  0.000000  0.000000  0.074074  0.000000  0.074074  0.000000  0.037037  0.222222  0.000000  0.000000  0.000000  0.370370  0.037037  0.074074  0.000000  0.074074  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.074074  0.037037  0.000000  0.148148  0.000000  0.148148  0.111111  0.000000  0.037037  0.000000  0.037037  0.037037  0.037037  0.074074  0.000000  0.037037  0.185185 
 0.000000  0.000000  0.000000  0.037037  0.000000  0.592593  0.000000  0.000000  0.037037  0.000000  0.000000  0.259259  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.592593  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.333333  0.000000  0.037037 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.037037  0.148148  0.037037  0.000000  0.000000  0.000000  0.000000  0.444444  0.000000  0.148148  0.037037  0.000000  0.037037 
 0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.703704  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.481481  0.000000  0.037037  0.037037  0.148148  0.074074  0.074074  0.000000  0.037037 
 0.185185  0.074074  0.000000  0.000000  0.000000  0.148148  0.000000  0.037037  0.000000  0.074074  0.037037  0.037037  0.000000  0.000000  0.000000  0.148148  0.037037  0.222222  0.000000  0.000000 
 0.037037  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.333333  0.000000  0.148148  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.370370  0.000000  0.000000 
 0.259259  0.037037  0.000000  0.074074  0.000000  0.074074  0.074074  0.000000  0.000000  0.037037  0.037037  0.074074  0.000000  0.037037  0.000000  0.111111  0.111111  0.000000  0.000000  0.074074 
 0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.851852  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.703704  0.074074  0.000000  0.000000  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000  0.037037 
 0.185185  0.000000  0.037037  0.037037  0.074074  0.037037  0.000000  0.074074  0.000000  0.037037  0.037037  0.111111  0.185185  0.000000  0.000000  0.037037  0.037037  0.074074  0.037037  0.000000 
 0.000000  0.000000  0.037037  0.037037  0.074074  0.000000  0.000000  0.222222  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.148148  0.370370  0.000000  0.000000 
 0.037037  0.000000  0.111111  0.037037  0.000000  0.037037  0.037037  0.037037  0.111111  0.148148  0.000000  0.074074  0.000000  0.037037  0.111111  0.074074  0.037037  0.074074  0.000000  0.037037 
 0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.148148  0.592593  0.037037  0.000000  0.000000 
 0.185185  0.000000  0.259259  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.074074  0.074074  0.148148  0.000000  0.000000  0.037037  0.074074  0.037037  0.000000  0.037037 
 0.074074  0.000000  0.037037  0.000000  0.037037  0.074074  0.000000  0.111111  0.000000  0.111111  0.370370  0.000000  0.037037  0.000000  0.000000  0.000000  0.148148  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SAYSASKAAVEGLTESLALELAPYGIRVNVIAPGAVLTDM MEME-1 regular expression
--------------------------------------------------------------------------------
[SA]AYS[AS][SA]K[AF][AG][VL]XG[LF][TS][ER]S[LM]AL[ED]LA[PK]X[GN][IV]RVNV[VI]APGX[VI]XTDM
--------------------------------------------------------------------------------




Time  0.99 secs.

********************************************************************************


********************************************************************************
MOTIF GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2	width =  29  sites =  27  llr = 1063  E-value = 2.0e-157
********************************************************************************
--------------------------------------------------------------------------------
	Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  ::14::::521::::517:2:422:6::1
pos.-specific     C  ::::::::1::::::::::::::::::::
probability       D  1::::::::1:::::::::1:::1:::::
matrix            E  :::::::::::::::2::11::22:::::
                  F  ::::::::::::::1:::::3::::1::1
                  G  5::::::a331a:a::::::::1:9:::1
                  H  ::::::::::::::1::::1:1:::::::
                  I  :::135::::::6:::2:1::1:::::1:
                  K  :61:::::::1:::3:::3:::31:14::
                  L  ::::5:::::::3:2:1:2161:1:::1:
                  M  ::::::::::::::::1::::::::::::
                  N  ::1::::::1::::::::::::::::1::
                  P  :::::::::::::::::::::::::::::
                  Q  11:::::::::::::::::::::1:::::
                  R  ::::::::::2:::2:::11::1:::1::
                  S  1:::::::133::::1:1::::11:11:1
                  T  ::1:::a:::::::::3::1::1:::::1
                  V  ::5414::::::1::::2:1:1:::::66
                  W  :::::::::::::::::::::::::::::
                  Y  ::::::::::::::::1::::::::::::

         bits    6.7                              
                 6.0                              
                 5.4                              
                 4.7                              
Relative         4.0       *                      
Entropy          3.4       **   * *               
(56.8 bits)      2.7      ***   * *      *   *    
                 2.0  * ******  ****  *  *   *  * 
                 1.3 ******************* *** *****
                 0.7 *****************************
                 0.0 -----------------------------

Multilevel           GKVVLITGAGSGIGKATAKXLAKAGAKVV
consensus               AIV  GS  L  EI   F        
sequence                      A                   
                                                  
                                                  
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                        Site           
-------------             ----- ---------            -----------------------------
HDE_CANTR                   322  1.60e-24 ASGAPTVSLK DKVVLITGAGAGLGKEYAKWFAKYGAKVV VNDFKDATKT
DHII_HUMAN                   34  1.24e-22 NEEFRPEMLQ GKKVIVTGASKGIGREMAYHLAKMGAHVV VTARSKETLQ
YINL_LISMO                    5  5.86e-22       MTIK NKVIIITGASSGIGKATALLLAEKGAKLV LAARRVEKLE
HDHA_ECOLI                   11  1.39e-21 MFNSDNLRLD GKCAIITGAGAGIGKEIAITFATAGASVV VSDINADAAN
ENTA_ECOLI                    5  2.25e-21       MDFS GKNVWVTGAGKGIGYATALAFVEAGAKVT GFDQAFTQEQ
HDE_CANTR                     8  2.85e-21    MSPVDFK DKVVIITGAGGGLGKYYSLEFAKLGAKVV VNDLGGALNG
RIDH_KLEAE                   14  1.14e-20 SVSSMNTSLS GKVAAITGAASGIGLECARTLLGAGAKVV LIDREGEKLN
BUDC_KLETE                    2  4.73e-20          M QKVALVTGAGQGIGKAIALRLVKDGFAVA IADYNDATAT
DHGB_BACME                    7  1.66e-19     MYKDLE GKVVVITGSSTGLGKSMAIRFATEKAKVV VNYRSKEDEA
AP27_MOUSE                    7  4.56e-19     MKLNFS GLRALVTGAGKGIGRDTVKALHASGAKVV AVTRTNSDLV
YRTP_BACSU                    6  9.06e-19      MQSLQ HKTALITGGGRGIGRATALALAKEGVNIG LIGRTSANVE
DHMA_FLAS1                   14  1.10e-18 GVSRRPGRLA GKAAIVTGAAGGIGRATVEAYLREGASVV AMDLAPRLAA
BA72_EUBSP                    6  1.47e-18      MNLVQ DKVTIITGGTRGIGFAAAKIFIDNGAKVS IFGETQEEVD
DHB3_HUMAN                   48  2.59e-18 VLPKSFLRSM GQWAVITGAGDGIGKAYSFELAKRGLNVV LISRTLEKLE
3BHD_COMTE                    6  4.12e-18      TNRLQ GKVALVTGGASGVGLEVVKLLLGEGAKVA FSDINEAAGQ
FIXR_BRAJA                   36  5.94e-18 AVNARVDRGE PKVMLLTGASRGIGHATAKLFSEAGWRII SCARQPFDGE
FVT1_HUMAN                   32  1.22e-17 LISPKPLALP GAHVVVTGGSSGIGKCIAIECYKQGAFIT LVARNEDKLL
BDH_HUMAN                    55  1.60e-17 TYASAAEPVG SKAVLVTGCDSGFGFSLAKHLHSKGFLVF AGCLMKDKGH
PCR_PEA                      86  3.21e-17 SSSEGKKTLR KGNVVITGASSGLGLATAKALAESGKWHV IMACRDYLKA
DHB2_HUMAN                   82  3.50e-17 LSGQELLPVD QKAVLVTGGDCGLGHALCKYLDELGFTVF AGVLNENGPG
2BHD_STREX                    6  5.37e-17      MNDLS GKTVIITGGARGLGAEAARQAVAAGARVV LADVLDEEGA
LIGD_PSEPA                    6  3.31e-16      MKDFQ DQVAFITGGASGAGFGQAKVFGQAGAKIV VADVRAEAVE
NODG_RHIME                    6  8.57e-16      MFELT GRKALVTGASGAIGGAIARVLHAQGAIVG LHGTQIEKLE
DHES_HUMAN                    2  5.71e-15          A RTVVLITGCSSGIGLHLAVRLASDPSQSF KVYATLRDLK
DHCA_HUMAN                    4  1.18e-14        SSG IHVALVTGGNKGIGLAIVRDLCRLFSGDV VLTARDVTRG
BPHB_PSEPS                    5  3.68e-14       MKLK GEAVLITGGASGLGRALVDRFVAEAKVAV LDKSAERLAE
MAS1_AGRRA                  245  1.10e-13 FSHWTVEIHQ SPVILVSGSNRGVGKAIAEDLIAHGYRLS LGARKVKDLE
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
HDE_CANTR                         2.8e-21  7_[2]_285_[2]_556
DHII_HUMAN                        1.2e-22  33_[2]_230
YINL_LISMO                        5.9e-22  4_[2]_215
HDHA_ECOLI                        1.4e-21  10_[2]_216
ENTA_ECOLI                        2.2e-21  4_[2]_215
RIDH_KLEAE                        1.1e-20  13_[2]_207
BUDC_KLETE                        4.7e-20  1_[2]_211
DHGB_BACME                        1.7e-19  6_[2]_227
AP27_MOUSE                        4.6e-19  6_[2]_209
YRTP_BACSU                        9.1e-19  5_[2]_204
DHMA_FLAS1                        1.1e-18  13_[2]_228
BA72_EUBSP                        1.5e-18  5_[2]_215
DHB3_HUMAN                        2.6e-18  47_[2]_234
3BHD_COMTE                        4.1e-18  5_[2]_219
FIXR_BRAJA                        5.9e-18  35_[2]_214
FVT1_HUMAN                        1.2e-17  31_[2]_272
BDH_HUMAN                         1.6e-17  54_[2]_260
PCR_PEA                           3.2e-17  85_[2]_285
DHB2_HUMAN                        3.5e-17  81_[2]_277
2BHD_STREX                        5.4e-17  5_[2]_221
LIGD_PSEPA                        3.3e-16  5_[2]_271
NODG_RHIME                        8.6e-16  5_[2]_211
DHES_HUMAN                        5.7e-15  1_[2]_297
DHCA_HUMAN                        1.2e-14  3_[2]_244
BPHB_PSEPS                        3.7e-14  4_[2]_242
MAS1_AGRRA                        1.1e-13  244_[2]_203
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF GKVVJITGASSGIGKATAKALAKAGAKVV width=29 seqs=27
HDE_CANTR                (  322) DKVVLITGAGAGLGKEYAKWFAKYGAKVV  1 
DHII_HUMAN               (   34) GKKVIVTGASKGIGREMAYHLAKMGAHVV  1 
YINL_LISMO               (    5) NKVIIITGASSGIGKATALLLAEKGAKLV  1 
HDHA_ECOLI               (   11) GKCAIITGAGAGIGKEIAITFATAGASVV  1 
ENTA_ECOLI               (    5) GKNVWVTGAGKGIGYATALAFVEAGAKVT  1 
HDE_CANTR                (    8) DKVVIITGAGGGLGKYYSLEFAKLGAKVV  1 
RIDH_KLEAE               (   14) GKVAAITGAASGIGLECARTLLGAGAKVV  1 
BUDC_KLETE               (    2) QKVALVTGAGQGIGKAIALRLVKDGFAVA  1 
DHGB_BACME               (    7) GKVVVITGSSTGLGKSMAIRFATEKAKVV  1 
AP27_MOUSE               (    7) GLRALVTGAGKGIGRDTVKALHASGAKVV  1 
YRTP_BACSU               (    6) HKTALITGGGRGIGRATALALAKEGVNIG  1 
DHMA_FLAS1               (   14) GKAAIVTGAAGGIGRATVEAYLREGASVV  1 
BA72_EUBSP               (    6) DKVTIITGGTRGIGFAAAKIFIDNGAKVS  1 
DHB3_HUMAN               (   48) GQWAVITGAGDGIGKAYSFELAKRGLNVV  1 
3BHD_COMTE               (    6) GKVALVTGGASGVGLEVVKLLLGEGAKVA  1 
FIXR_BRAJA               (   36) PKVMLLTGASRGIGHATAKLFSEAGWRII  1 
FVT1_HUMAN               (   32) GAHVVVTGGSSGIGKCIAIECYKQGAFIT  1 
BDH_HUMAN                (   55) SKAVLVTGCDSGFGFSLAKHLHSKGFLVF  1 
PCR_PEA                  (   86) KGNVVITGASSGLGLATAKALAESGKWHV  1 
DHB2_HUMAN               (   82) QKAVLVTGGDCGLGHALCKYLDELGFTVF  1 
2BHD_STREX               (    6) GKTVIITGGARGLGAEAARQAVAAGARVV  1 
LIGD_PSEPA               (    6) DQVAFITGGASGAGFGQAKVFGQAGAKIV  1 
NODG_RHIME               (    6) GRKALVTGASGAIGGAIARVLHAQGAIVG  1 
DHES_HUMAN               (    2) RTVVLITGCSSGIGLHLAVRLASDPSQSF  1 
DHCA_HUMAN               (    4) IHVALVTGGNKGIGLAIVRDLCRLFSGDV  1 
BPHB_PSEPS               (    5) GEAVLITGGASGLGRALVDRFVAEAKVAV  1 
MAS1_AGRRA               (  245) SPVILVSGSNRGVGKAIAEDLIAHGYRLS  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 29 n= 9071 bayes= 8.38786 E= 2.0e-157 
  -259   -306    135   -129   -348    214     96    -76      2   -341   -274      9    -25    132    -19     26   -200   -346   -322   -270 
  -129   -306   -206    -17   -352   -135     91   -351    338   -135   -273   -165    -30    128    -11   -182    -46   -347   -320   -274 
     3    110   -293   -229   -268   -397     56   -109     15   -239   -206     37   -317   -179    -63   -242      9    259    131   -285 
   176   -294   -644   -585   -376   -625   -510     66   -563   -301     44   -545   -568   -513   -574   -490    -58    238   -472   -444 
  -150   -251   -559   -481     11   -532   -366    207   -450    234   -162   -444   -462   -370   -439   -389   -314     79    177   -313 
  -514   -343   -722   -691   -442   -757   -711    316   -681   -106   -347   -656   -674   -663   -731   -644   -443    239   -633   -567 
  -369   -263   -460   -490   -463   -501   -394   -384   -411   -493   -356   -292   -450   -350   -422    -24    398   -379   -434   -481 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
   220    256   -629   -624   -590    184   -549   -606   -640   -618   -543   -505   -467   -505   -587     33   -349   -480   -566   -611 
    92   -395     68   -323   -571    163   -270   -642   -356   -633   -593    104   -446   -312   -437    215    -54   -600   -556   -460 
   -53    131    -25   -118   -337      7   -130   -341    144   -328   -261   -149   -277     66    169    212    -37   -334   -312   -260 
  -183   -327   -318   -379   -485    335   -342   -505   -362   -547   -451   -274   -423   -375   -366   -290   -404   -487   -378   -431 
  -207   -286   -474   -461    -50   -554   -424    344   -420     99   -145   -417   -483   -395   -457   -404   -324     38   -360   -337 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
  -137   -322   -287   -206    141   -131    187   -335    255     83   -289   -228   -352   -125    180   -247   -256   -346   -339     34 
   235    113    -81    131   -330   -137     43   -322   -226   -329   -266   -229   -368   -196   -270     13   -222   -231   -316    -18 
   -54    150   -471   -393   -205   -436   -277    187   -360     69    139   -349   -382     23   -355   -289    200    -52   -245    185 
   267    123   -429   -385   -362   -280   -364   -348   -387   -364   -302   -378   -438   -347   -388     14   -257     63   -350   -399 
  -264   -240    -37     45     -6   -366   -167     81    245     82   -211   -195   -306   -117    139   -200   -202    -92   -286     33 
    55   -283     49     98   -320   -339    182    -69   -105      7   -246   -155   -278     64    139   -168     36    -31    163     29 
  -160    150   -662   -607    312   -651   -344   -273   -571    255   -237   -532   -569   -458   -539   -517   -457   -360   -253     68 
   172    142    -72   -369   -219   -137    225     43   -344     22   -159   -340   -385   -287   -346    -63   -222     74   -253     28 
    55   -298    -24    160   -335    -45   -129   -339    212   -326   -259   -149   -274     66     57     28     36   -332   -310   -258 
    78   -296     50    159   -333   -335     98   -337     69      5     28      8   -273    135    -14     28   -186   -330   -308     29 
  -190   -323   -302   -364    -98    326   -327   -492   -127   -536   -438   -259   -108   -361   -351   -282   -399   -478   -364   -417 
   257    -60   -382   -333     61   -250   -308   -269    -42   -167   -235   -335   -418   -297   -337      4   -223   -105     91    -47 
  -119   -293   -186   -116    -16   -127     98    -73    258   -126   -255     81   -274     66    104     28    -36   -116    162   -256 
  -137   -117   -183   -322   -275   -435    -49     67   -330   -124   -219   -345   -312   -301   -304   -188   -168    310   -334   -377 
   -72   -150   -419   -367    106    -85   -277     -4   -355   -210   -183   -354   -354   -306   -340    -25      7    279   -286   -290 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 29 nsites= 27 E= 2.0e-157 
 0.000000  0.000000  0.148148  0.000000  0.000000  0.481481  0.037037  0.037037  0.037037  0.000000  0.000000  0.037037  0.037037  0.074074  0.037037  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.037037  0.000000  0.037037  0.037037  0.000000  0.629630  0.037037  0.000000  0.000000  0.037037  0.074074  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000 
 0.148148  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.074074  0.000000  0.000000  0.074074  0.000000  0.000000  0.037037  0.000000  0.074074  0.481481  0.037037  0.000000 
 0.407407  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.444444  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.259259  0.000000  0.481481  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.148148  0.037037  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.518519  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.444444  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.962963  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.518519  0.074074  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.222222  0.000000  0.074074  0.000000  0.000000  0.296296  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.296296  0.037037  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.037037  0.000000  0.000000  0.111111  0.000000  0.000000  0.148148  0.000000  0.000000  0.000000  0.000000  0.037037  0.185185  0.333333  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.962963  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.592593  0.000000  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.111111  0.037037  0.074074  0.000000  0.333333  0.185185  0.000000  0.000000  0.000000  0.000000  0.185185  0.000000  0.000000  0.000000  0.000000  0.037037 
 0.518519  0.037037  0.037037  0.222222  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.037037 
 0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.222222  0.000000  0.148148  0.074074  0.000000  0.000000  0.037037  0.000000  0.000000  0.259259  0.037037  0.000000  0.111111 
 0.703704  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.185185  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.074074  0.037037  0.000000  0.000000  0.111111  0.333333  0.185185  0.000000  0.000000  0.000000  0.000000  0.148148  0.000000  0.000000  0.037037  0.000000  0.037037 
 0.185185  0.000000  0.074074  0.111111  0.000000  0.000000  0.074074  0.037037  0.000000  0.111111  0.000000  0.000000  0.000000  0.037037  0.148148  0.000000  0.074074  0.074074  0.037037  0.037037 
 0.037037  0.037037  0.000000  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.555556  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037 
 0.370370  0.037037  0.037037  0.000000  0.000000  0.037037  0.111111  0.074074  0.000000  0.111111  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.148148  0.000000  0.037037 
 0.185185  0.000000  0.037037  0.185185  0.000000  0.074074  0.000000  0.000000  0.259259  0.000000  0.000000  0.000000  0.000000  0.037037  0.074074  0.074074  0.074074  0.000000  0.000000  0.000000 
 0.222222  0.000000  0.074074  0.185185  0.000000  0.000000  0.037037  0.000000  0.074074  0.111111  0.037037  0.037037  0.000000  0.074074  0.037037  0.074074  0.000000  0.000000  0.000000  0.037037 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.851852  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.592593  0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.000000  0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.037037  0.037037  0.037037 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.037037  0.037037  0.037037  0.370370  0.037037  0.000000  0.074074  0.000000  0.037037  0.111111  0.074074  0.037037  0.037037  0.037037  0.000000 
 0.037037  0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.148148  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.629630  0.000000  0.000000 
 0.074074  0.000000  0.000000  0.000000  0.111111  0.074074  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.074074  0.555556  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GKVVJITGASSGIGKATAKALAKAGAKVV MEME-2 regular expression
--------------------------------------------------------------------------------
GKV[VA][LI][IV]TG[AG][GSA]SG[IL]GK[AE][TI]AKX[LF]AKAGAKVV
--------------------------------------------------------------------------------




Time  1.81 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       2.29e-35  5_[2(5.37e-17)]_115_[1(1.02e-25)]_\
    66
3BHD_COMTE                       2.98e-27  5_[2(4.12e-18)]_114_[1(2.27e-16)]_\
    65
ADH_DROME                        1.15e-17  5_[2(8.93e-07)]_115_[1(5.98e-18)]_\
    66
AP27_MOUSE                       7.33e-38  6_[2(4.56e-19)]_111_[1(3.99e-26)]_\
    58
BA72_EUBSP                       5.46e-35  5_[2(1.47e-18)]_120_[1(9.52e-24)]_\
    55
BDH_HUMAN                        5.87e-31  54_[2(1.60e-17)]_122_[1(5.13e-21)]_\
    98
BPHB_PSEPS                       2.40e-14  4_[2(3.68e-14)]_117_[1(3.12e-07)]_\
    85
BUDC_KLETE                       1.10e-42  1_[2(4.73e-20)]_119_[1(5.30e-30)]_\
    52
DHES_HUMAN                       5.92e-30  1_[2(5.71e-15)]_122_[1(1.66e-22)]_\
    135
DHGB_BACME                       1.09e-38  6_[2(1.66e-19)]_122_[1(1.35e-26)]_\
    65
DHII_HUMAN                       3.05e-26  33_[2(1.24e-22)]_118_[1(5.74e-11)]_\
    72
DHMA_FLAS1                       1.53e-34  13_[2(1.10e-18)]_120_[1(2.99e-23)]_\
    68
ENTA_ECOLI                       6.84e-37  4_[2(2.25e-21)]_108_[1(7.46e-23)]_\
    67
FIXR_BRAJA                       1.51e-39  35_[2(5.94e-18)]_122_[1(4.48e-29)]_\
    52
GUTD_ECOLI                       2.64e-22  1_[2(3.65e-09)]_121_[1(2.61e-20)]_\
    68
HDE_CANTR                        4.06e-38  7_[2(2.85e-21)]_124_[1(2.69e-19)]_\
    121_[2(1.60e-24)]_114_[1(3.64e-22)]_402
HDHA_ECOLI                       5.05e-39  10_[2(1.39e-21)]_117_[1(7.91e-25)]_\
    59
LIGD_PSEPA                       1.20e-27  5_[2(3.31e-16)]_120_[1(7.33e-19)]_\
    111
NODG_RHIME                       6.74e-38  5_[2(8.57e-16)]_115_[1(1.93e-29)]_\
    56
RIDH_KLEAE                       3.20e-35  13_[2(1.14e-20)]_115_[1(7.15e-22)]_\
    52
YINL_LISMO                       2.00e-26  4_[2(5.86e-22)]_118_[1(1.15e-11)]_\
    57
YRTP_BACSU                       1.77e-38  5_[2(9.06e-19)]_118_[1(5.05e-27)]_\
    46
CSGA_MYXXA                       9.45e-17  85_[1(3.40e-20)]_41
DHB2_HUMAN                       1.89e-32  81_[2(3.50e-17)]_119_[1(5.51e-23)]_\
    118
DHB3_HUMAN                       3.88e-31  47_[2(2.59e-18)]_119_[1(2.61e-20)]_\
    75
DHCA_HUMAN                       5.56e-13  3_[2(1.18e-14)]_162_[1(2.45e-05)]_\
    42
FABI_ECOLI                       1.02e-14  5_[2(5.30e-05)]_122_[1(1.01e-16)]_\
    66
FVT1_HUMAN                       2.67e-31  31_[2(1.22e-17)]_123_[1(3.23e-21)]_\
    109
HMTR_LEIMA                       2.84e-25  5_[2(4.71e-12)]_156_[1(1.53e-20)]_\
    57
MAS1_AGRRA                       3.42e-14  244_[2(1.10e-13)]_116_[1(4.46e-08)]_\
    47
PCR_PEA                          7.96e-14  85_[2(3.21e-17)]_285
RFBB_NEIGO                       1.35e-09  5_[2(1.26e-08)]_128_[1(4.46e-08)]_\
    144
YURA_MYXXA                       9.31e-21  157_[1(2.64e-24)]_61
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-Mac-Mini.local

********************************************************************************
