optrcdmaeAT: Optimal Row-Column Designs for Two-Colour cDNA Microarray
Experiments
Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2018) <doi:10.1080/03610918.2018.1429617> algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
| Version: |
1.0.1 |
| Depends: |
R (≥ 3.3.2), MASS, Matrix, igraph, tcltk |
| Published: |
2025-05-25 |
| Author: |
Dibaba Bayisa Gemechu [aut, cre],
Legesse Kassa Debusho [aut],
Linda Haines [aut] |
| Maintainer: |
Dibaba Bayisa Gemechu <diboobayu at gmail.com> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| In views: |
ExperimentalDesign |
| CRAN checks: |
optrcdmaeAT results |
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