Last updated on 2026-03-06 17:50:11 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 38.59 | 712.19 | 750.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 23.73 | 484.85 | 508.58 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 69.00 | 1188.07 | 1257.07 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 66.00 | 1215.06 | 1281.06 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 120.00 | 128.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 37.00 | 488.00 | 525.00 | OK | |
| r-patched-linux-x86_64 | 0.11.0 | 53.38 | 646.14 | 699.52 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.68 | 734.52 | 771.20 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.11.0 | 39.00 | 545.00 | 584.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 108.00 | 116.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 24.00 | 381.00 | 405.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 54.00 | 617.00 | 671.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-07 03:13:54.068968: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.069267: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.072606: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.079009: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.09253: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.092704: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.095205: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.10157: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.110052: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.11028: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.115027: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.129926: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.130343: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.136016: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.13613: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.140015: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.153043: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.153301: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.180662: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.180876: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.186247: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.222141: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.237428: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.237649: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.245809: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.325181: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.326403: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.357227: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.357359: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.359722: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.365689: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.372684: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.372845: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.382662: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.397279: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.397753: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.437151: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.43728: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.439835: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.445854: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.457487: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.457668: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.462189: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.476917: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.477308: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.497895: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.498039: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.50056: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.50665: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.51927: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.519475: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.530411: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.545471: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.546016: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.57463: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.57477: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.576988: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.582963: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.594146: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.594355: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.598965: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.613654: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.614034: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.631156: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.63128: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.633639: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.639557: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.650411: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.650605: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.654995: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.670008: embedding
> test_pipeop_isomap.R: 2026-03-07 03:13:54.670511: DONE
> test_pipeop_isomap.R: 2026-03-07 03:13:54.708256: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.708469: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.711172: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.717626: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.736905: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.737026: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.739183: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.745075: Classical Scaling
> test_pipeop_isomap.R: 2026-03-07 03:13:54.75007: Isomap START
> test_pipeop_isomap.R: 2026-03-07 03:13:54.750161: constructing knn graph
> test_pipeop_isomap.R: 2026-03-07 03:13:54.752277: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-07 03:13:54.758141: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [257s/182s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-05 17:44:48.088485: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:48.089017: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:48.099856: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:48.121561: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:48.231225: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:48.231571: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:48.238389: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:48.264492: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:48.295423: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:48.296278: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:48.317053: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:48.363661: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:48.36485: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:48.388728: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:48.389031: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:48.408548: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:48.458089: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:48.459171: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:48.534025: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:48.534316: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:48.556522: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:48.678932: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:48.733355: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:48.733868: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:48.771342: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.024476: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:49.028136: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:49.180063: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.180364: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.186982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.207444: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:49.235645: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.236085: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.265738: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.314399: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:49.315499: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:49.45125: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.451536: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.460564: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.481108: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:49.52128: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.524023: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.538943: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.586276: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:49.587326: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:49.651017: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.651311: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.676093: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.695465: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:49.744857: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.745329: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.763379: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.808654: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:49.809846: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:49.875891: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.876173: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.882806: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:49.90078: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:49.93929: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:49.939761: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:49.960708: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:50.007411: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:50.008497: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:50.094032: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:50.094372: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:50.101981: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:50.121013: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:50.16692: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-05 17:44:50.167339: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:50.182272: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:50.228376: embedding
> test_pipeop_isomap.R: 2026-03-05 17:44:50.229566: DONE
> test_pipeop_isomap.R: 2026-03-05 17:44:50.303449: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:50.303737: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:50.311918: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:50.331873: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:50.403624: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:50.403916: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:50.423656: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:50.445028: Classical Scaling
> test_pipeop_isomap.R: 2026-03-05 17:44:50.468379: Isomap START
> test_pipeop_isomap.R: 2026-03-05 17:44:50.468724: constructing knn graph
> test_pipeop_isomap.R: 2026-03-05 17:44:50.476439: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-05 17:44:50.49569: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [235s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-04 10:40:53.173842: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:53.174544: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:53.184772: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:53.200843: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:53.256557: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:53.257079: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:53.268755: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:53.290525: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:53.329376: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:53.330053: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:53.345635: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:53.382154: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:53.384029: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:53.429809: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:53.430547: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:53.45579: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:53.508158: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:53.510352: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:53.768965: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:53.769432: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:53.785813: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:53.875714: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:53.946554: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:53.947451: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:53.994696: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:54.208722: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:54.214243: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:54.429149: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:54.429925: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:54.443456: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:54.470616: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:54.529622: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:54.530693: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:54.55307: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:54.606566: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:54.608956: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:54.790927: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:54.79137: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:54.802252: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:54.823347: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:54.902162: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:54.903116: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:54.940757: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:54.990031: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:54.99192: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:55.112042: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:55.11269: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:55.123463: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:55.14542: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:55.220575: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:55.221519: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:55.242598: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:55.292535: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:55.294438: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:55.424816: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:55.425502: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:55.436948: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:55.45231: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:55.516638: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:55.517567: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:55.535823: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:55.572555: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:55.574083: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:55.671161: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:55.671802: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:55.683933: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:55.7061: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:55.803308: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-04 10:40:55.804172: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:55.826007: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:55.875834: embedding
> test_pipeop_isomap.R: 2026-03-04 10:40:55.87741: DONE
> test_pipeop_isomap.R: 2026-03-04 10:40:56.010724: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:56.011409: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:56.023691: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:56.045589: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:56.176795: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:56.177473: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:56.190404: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:56.214649: Classical Scaling
> test_pipeop_isomap.R: 2026-03-04 10:40:56.253284: Isomap START
> test_pipeop_isomap.R: 2026-03-04 10:40:56.253949: constructing knn graph
> test_pipeop_isomap.R: 2026-03-04 10:40:56.267198: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-04 10:40:56.291004: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_dictionary.R:7:3',
'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64