Statistical Methods for Microbiome Compositional Data

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Documentation for package ‘MicrobiomeStat’ version 1.3

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bmdd Bimodal Dirichlet Distribution Estimation
bmdd.nlopt NLopt C++ Implementation of BMDD
cscca Compositional Sparse Canonical Correlation Analysis
cscca.CV Compositional Sparse Canonical Correlation Analysis (Cross Valication Version)
DGP_OC Data Generating Process (Omics Data versus Compositional data)
linda Linear (Lin) Model for Differential Abundance (DA) Analysis of High-dimensional Compositional Data
linda.plot Plot LinDA Results
linda.wald.test Wald test for bias-corrected regression coefficients
smokers Microbiome data from the human upper respiratory tract (left and right throat)