Package: DiPALM
Type: Package
Title: Differential Pattern Analysis via Linear Modeling
Version: 1.3
Date: 2026-05-21
Authors@R: c(person(given = c("Ryan", "C."),
                      family = "Sartor",
                      role = c("aut", "cre"),
                      email = "sartorry@gmail.com"),
               person(given = "Kathleen",
                      family = "Greenham",
                      role = "aut",
                      email = "greenham@umn.edu"),
               person(given = "William",
                      family = "Gustafson",
                      role = "aut",
                      email = "williamlgustafson@gmail.com"))
Description: Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). <doi:10.7554/eLife.58993>.
License: GPL (>= 2)
Imports: limma, WGCNA, ggplot2, pwalign, Biostrings, hashr
Suggests: edgeR
NeedsCompilation: no
Packaged: 2026-05-28 19:04:36 UTC; ryan
Depends: R (>= 4.1.0)
Repository: CRAN
Date/Publication: 2026-05-29 09:40:02 UTC
Author: Ryan C. Sartor [aut, cre],
  Kathleen Greenham [aut],
  William Gustafson [aut]
Maintainer: Ryan C. Sartor <sartorry@gmail.com>
Built: R 4.5.3; ; 2026-06-04 21:49:22 UTC; windows
