Package: nimbleSCR
Type: Package
Title: Spatial Capture-Recapture (SCR) Methods Using 'nimble'
Version: 0.2.1
Maintainer: Daniel Turek <danielturek@gmail.com>
Authors@R: c(person("Richard", "Bischof", role = "aut"),
             person("Daniel", "Turek", role = c("aut", "cre"), email = "danielturek@gmail.com"),
             person("Cyril", "Milleret", role = "aut"),
             person("Torbjørn", "Ergon", role = "aut"),
             person("Pierre", "Dupont", role = "aut"),
             person("Soumen", "Dey", role = "aut"),
             person("Wei", "Zhang", role = "aut"),
             person("Perry", "de Valpine", role = "aut"))
Date: 2022-11-30
Description: Provides utility functions, distributions, and fitting methods for Bayesian Spatial Capture-Recapture (SCR) and Open Population Spatial Capture-Recapture (OPSCR) modelling using the nimble package (de Valpine et al. 2017 <doi:10.1080/10618600.2016.1172487 >). Development of the package was motivated primarily by the need for flexible and efficient analysis of large-scale SCR data (Bischof et al. 2020 <doi:10.1073/pnas.2011383117 >). Computational methods and techniques implemented in nimbleSCR include those discussed in Turek et al. 2021 <doi:10.1002/ecs2.3385>; among others. For a recent application of nimbleSCR, see Milleret et al. (2021) <doi:10.1098/rsbl.2021.0128>.
License: GPL-3
Depends: R (>= 3.5.0), nimble
Imports: methods
Encoding: UTF-8
RoxygenNote: 7.2.1
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), coda, basicMCMCplots
VignetteBuilder: knitr
Config/testthat/edition: 3
Collate: calcWindowSizes.R getWindowIndex.R
        integrateIntensityLocal_normal.R integrateIntensityLocal_exp.R
        integrateIntensity_normal.R integrateIntensity_exp.R
        stratRejectionSampler_normal.R stratRejectionSampler_exp.R
        dDispersal_exp.R dHabitatMask.R dbernppAC.R
        dbernppACmovement_normal.R dbernppACmovement_exp.R
        dbernppDetection_normal.R dbernppLocalACmovement_normal.R
        dbernppLocalACmovement_exp.R dbernppLocalDetection_normal.R
        dbinomLocal_normal.R dmultiLocal_normal.R dbinom_vector.R
        dnormalizer.R dpoisLocal_normal.R dbinomLocal_normalPlateau.R
        dbinomLocal_exp.R dpoisppAC.R dpoisppDetection_normal.R
        dpoisppLocalDetection_normal.R getLocalObjects.R
        getMidPointNodes.R getWindowCoords.R getSparseY.R
        getHomeRangeArea.R localTrapCalculations.R
        makeConstantNimbleFunction.R marginalVoidProbIntegrand.R
        marginalVoidProbNumIntegration.R scaleCoordsToHabitatGrid.R
        dcatState1Alive1Dead.R dcatState1Alive2Dead.R
        dcatState2Alive2Dead.R sampler_categorical_general.R
        calculateDensity.R zzz.R
NeedsCompilation: no
Packaged: 2022-11-30 14:37:23 UTC; dturek
Author: Richard Bischof [aut],
  Daniel Turek [aut, cre],
  Cyril Milleret [aut],
  Torbjørn Ergon [aut],
  Pierre Dupont [aut],
  Soumen Dey [aut],
  Wei Zhang [aut],
  Perry de Valpine [aut]
Repository: CRAN
Date/Publication: 2022-11-30 15:30:02 UTC
Built: R 4.4.3; ; 2026-02-18 04:03:37 UTC; windows
