tofList {WMBrukerParser}R Documentation

Parsed TOF Spectrum List

Description

A list of time-of-flight mass spectrum vectors addressable by spectrumName.

Details

Spectrum vectors can also be addressed by spectrum index. This option should be used with caution since data and meta-data can be reordered independently during subsequent signal processing or statistical analysis.

In the event that default assignments were used for spectrumNames (due to missing sampleInfo.sampleNames meta-data) they can be updated.

See Also

WMBrukerParser, BrukerParser, ParserParams, ParseAndSave, tofListMetaData

Examples


## To access a spectrum vector:

data(tofListRun2)

spectrum <- tofList[[ "Pool 8_1"]];

## or:

spectrum <- tofList[[1]];  # Use with caution!

## To update a spectrum's vector:

 tofList[ "Pool 8_2"] <- list(spectrum)

## To update the tofList names:

newSpecNames<-list();
numSpec<-length(tofList);
for (i in 1:numSpec) {newSpecNames[i]<-paste("spec",i, sep="")};
names(tofList)<-newSpecNames;

[Package WMBrukerParser version 1.1 Index]