Statistical Analysis Tools for High Dimension Molecular Data (HDMD)

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Documentation for package ‘HDMD’ version 1.0

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HDMD-package Structural Analysis Tools for High Dimensional Molecular Data
AA54 Normalized Amino Acid Indices quantifying 54 various attributes
AAbyGroup Amino Acid Properties
AAGroups Amino Acid Properties
AAMetric Amino Acid Metric Solution using R (Atchley et al 2005)
AAMetric.Atchley Amino Acid Metric Solution (Atchley et al 2005)
AminoAcids Amino Acid Properties
bHLH288 Alignment of basic Helix Loop Helix (bHLH) domain data
factor.pa.ginv Principal Axis Factor Analysis when D>>N
FactorTransform Metric Solution for Amino Acid characters
FactorTransform.default Metric Solution for Amino Acid characters
FactorTransform.vector Metric Solution for Amino Acid characters
HDMD Structural Analysis Tools for High Dimensional Molecular Data
hydrophobic Amino Acid Properties
Loadings.variation Proportional and Cumulative Variation of Loading Components
MolecularEntropy Molecular Entropy for DNA or Amino Acid Sequences
MolecularMI Molecular Mutual Information
NMI Normalized Mutual Information
pairwise.mahalanobis Mahalanobis distances for grouped data
polar Amino Acid Properties
Promax.only Promax rotation (without prior Varimax rotation)
small Amino Acid Properties