* using log directory 'd:/Rcompile/CRANpkg/local/3.0/sampleSelection.Rcheck' * using R version 3.0.3 (2014-03-06) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'sampleSelection/DESCRIPTION' ... OK * this is package 'sampleSelection' version '1.0-2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'sampleSelection' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'Mroz87SelectionTest.R' Comparing 'Mroz87SelectionTest.Rout' to 'Mroz87SelectionTest.Rout.save' ...6593c6593 < [1] "Component 3: target is numeric, current is AsIs" --- > [1] "Component \"I(age^2)\": target is numeric, current is AsIs" 6595,6598c6595,6598 < [3] "Component 7: 'is.NA' value mismatch: 0 in current 325 in target" < [4] "Component 8: 'is.NA' value mismatch: 0 in current 325 in target" < [5] "Component 9: target is numeric, current is AsIs" < [6] "Component 10: 'is.NA' value mismatch: 0 in current 325 in target" --- > [3] "Component \"wage\": 'is.NA' value mismatch: 0 in current 325 in target" > [4] "Component \"exper\": 'is.NA' value mismatch: 0 in current 325 in target" > [5] "Component \"I(exper^2)\": target is numeric, current is AsIs" > [6] "Component \"city\": 'is.NA' value mismatch: 0 in current 325 in target" 7476c7476 < Return code 2: successive function values within tolerance limit --- > Return code 1: gradient close to zero 14649c14649 < [1] "Component 5: target is numeric, current is AsIs" --- > [1] "Component \"I(exper^2)\": target is numeric, current is AsIs" Running 'binarySelectionOutcome.R' Comparing 'binarySelectionOutcome.Rout' to 'binarySelectionOutcome.Rout.save' ...2471c2471 < BFGS maximisation, 56 iterations --- > BFGS maximisation, 55 iterations 2502c2502 < Log-Likelihood: -386 --- > Log-Likelihood: -396 2507,2508c2507,2508 < (Intercept) -0.383 0.127 -3.02 0.0025 ** < xs 3.948 0.458 8.62 <2e-16 *** --- > (Intercept) -0.113 0.103 -1.1 0.27 > xs 3.360 0.275 12.2 <2e-16 *** 2511,2512c2511,2512 < (Intercept) -1.172 0.110 -10.7 <2e-16 *** < xo 2.066 0.196 10.6 <2e-16 *** --- > (Intercept) -1.070 0.106 -10.1 <2e-16 *** > xo 1.994 0.185 10.8 <2e-16 *** 2515c2515 < rho 0.9601 0.0756 12.7 <2e-16 *** --- > rho 0.9535 0.0553 17.2 <2e-16 *** 2523,2524d2522 < Warning message: < In log(lik[i10]) : NaNs produced 2529c2527 < BFGS maximisation, 71 iterations --- > BFGS maximisation, 43 iterations 2531c2529 < Log-Likelihood: -386 --- > Log-Likelihood: -396 2536,2537c2534,2535 < (Intercept) -0.383 0.131 -2.91 0.0036 ** < xs 3.948 0.424 9.30 <2e-16 *** --- > (Intercept) -0.113 0.119 -0.94 0.35 > xs 3.361 0.369 9.12 <2e-16 *** 2540,2541c2538,2539 < (Intercept) -1.172 0.121 -9.72 <2e-16 *** < xo 2.066 0.219 9.45 <2e-16 *** --- > (Intercept) -1.070 0.120 -8.92 <2e-16 *** > xo 1.995 0.216 9.23 <2e-16 *** 2544c2542 < rho 0.9601 0.0551 17.4 <2e-16 *** --- > rho 0.9535 0.0451 21.2 <2e-16 *** 2559,2560c2557,2558 < [5,] -0.383 3.95 -1.17 2.07 0.960 < [6,] -0.383 3.95 -1.17 2.07 0.960 --- > [5,] -0.113 3.36 -1.07 1.99 0.954 > [6,] -0.113 3.36 -1.07 2.00 0.953 2569,2570c2567,2568 < [5,] 0.127 0.458 0.110 0.196 0.076 < [6,] 0.131 0.424 0.121 0.219 0.055 --- > [5,] 0.103 0.275 0.106 0.185 0.055 > [6,] 0.119 0.369 0.120 0.216 0.045 2578,2579c2576,2577 < [5,] -386.298 < [6,] -386.298 --- > [5,] -395.657 > [6,] -395.657 2649,2653c2647,2651 < [1] "Component 14: Component 10: Component 12: Attributes: < Component 2: Modes: numeric, character >" < [2] "Component 14: Component 10: Component 12: Attributes: < Component 2: target is numeric, current is character >" < [3] "Component 14: Component 10: Component 12: Component 1: Modes: numeric, logical" < [4] "Component 14: Component 10: Component 12: Component 1: names for current but not for target" < [5] "Component 14: Component 10: Component 12: Component 1: target is numeric, current is logical" --- > [1] "Component \"twoStep\": Component \"lm\": Component \"model\": Attributes: < Component \"row.names\": Modes: numeric, character >" > [2] "Component \"twoStep\": Component \"lm\": Component \"model\": Attributes: < Component \"row.names\": target is numeric, current is character >" > [3] "Component \"twoStep\": Component \"lm\": Component \"model\": Component \"YO\": Modes: numeric, logical" > [4] "Component \"twoStep\": Component \"lm\": Component \"model\": Component \"YO\": names for current but not for target" > [5] "Component \"twoStep\": Component \"lm\": Component \"model\": Component \"YO\": target is numeric, current is logical" Running 'fail.R' Comparing 'fail.Rout' to 'fail.Rout.save' ... OK Running 'heckitIvTest.R' Comparing 'heckitIvTest.Rout' to 'heckitIvTest.Rout.save' ... OK Running 'invMillsRatioTest.R' Comparing 'invMillsRatioTest.Rout' to 'invMillsRatioTest.Rout.save' ...68,70c68,70 < probit(mu1) -6.98 -0.887 0.441 0.747 2.74 < probit(mu2) -5.74 -0.671 -0.182 0.676 7.88 < rhobit(rho) -8.60 -0.620 0.236 0.517 9.39 --- > probit(mu1) -7 -0.9 0.4 0.7 3 > probit(mu2) -6 -0.7 -0.2 0.7 8 > rhobit(rho) -9 -0.6 0.2 0.5 9 73,82c73,80 < Estimate Std. Error z value Pr(>|z|) < (Intercept):1 0.3031 0.0134 22.70 < 2e-16 *** < (Intercept):2 -0.1004 0.0141 -7.14 9.6e-13 *** < (Intercept):3 1.1049 0.0400 27.65 < 2e-16 *** < x1:1 0.4050 0.0142 28.57 < 2e-16 *** < x1:2 0.5743 0.0158 36.31 < 2e-16 *** < x2:1 0.3108 0.0137 22.70 < 2e-16 *** < x2:2 0.6796 0.0162 41.87 < 2e-16 *** < --- < Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 --- > Estimate Std. Error z value > (Intercept):1 0.3 0.01 23 > (Intercept):2 -0.1 0.01 -7 > (Intercept):3 1.1 0.04 28 > x1:1 0.4 0.01 29 > x1:2 0.6 0.02 36 > x2:1 0.3 0.01 23 > x2:2 0.7 0.02 42 105,107c103,105 < probit(mu1) -6.97 -0.889 0.438 0.753 2.74 < probit(mu2) -5.64 -0.671 -0.180 0.677 7.62 < rho -8.80 -0.602 0.245 0.519 9.23 --- > probit(mu1) -7 -0.9 0.4 0.8 3 > probit(mu2) -6 -0.7 -0.2 0.7 8 > rho -9 -0.6 0.2 0.5 9 110,119c108,115 < Estimate Std. Error z value Pr(>|z|) < (Intercept):1 0.3031 0.0134 22.70 < 2e-16 *** < (Intercept):2 -0.1004 0.0141 -7.14 9.6e-13 *** < (Intercept):3 0.5023 0.0149 33.62 < 2e-16 *** < x1:1 0.4050 0.0142 28.57 < 2e-16 *** < x1:2 0.5743 0.0158 36.31 < 2e-16 *** < x2:1 0.3108 0.0137 22.70 < 2e-16 *** < x2:2 0.6796 0.0162 41.87 < 2e-16 *** < --- < Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 --- > Estimate Std. Error z value > (Intercept):1 0.3 0.01 23 > (Intercept):2 -0.1 0.01 -7 > (Intercept):3 0.5 0.01 34 > x1:1 0.4 0.01 29 > x1:2 0.6 0.02 36 > x2:1 0.3 0.01 23 > x2:2 0.7 0.02 42 Running 'probit.R' Comparing 'probit.Rout' to 'probit.Rout.save' ... OK Running 'selection.R' Comparing 'selection.Rout' to 'selection.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK