* using log directory 'd:/Rcompile/CRANpkg/local/3.0/mcsm.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'mcsm/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mcsm' version '1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mcsm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  'MASS' 'coda'
  Please remove these calls from your code.
Packages in Depends field not imported from:
  'MASS' 'coda'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
EMcenso : like: warning in pnorm(the - a, log = T): partial argument
  match of 'log' to 'log.p'
adapump: warning in rgamma(1, sha = gamma + 10 * alpha): partial
  argument match of 'sha' to 'shape'
adapump: warning in rgamma(10, sha = data + alpha): partial argument
  match of 'sha' to 'shape'
adapump: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
  argument match of 'sha' to 'shape'
gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
  match of 'nro' to 'nrow'
gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
  match of 'nco' to 'ncol'
kscheck: warning in rgamma(1, sha = gamma + 10 * alpha): partial
  argument match of 'sha' to 'shape'
kscheck: warning in rgamma(10, sha = data + alpha): partial argument
  match of 'sha' to 'shape'
kscheck: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
  argument match of 'sha' to 'shape'
logima: warning in matrix(0, ncol = 130, nro = 100): partial argument
  match of 'nro' to 'nrow'
logima: warning in rnorm(N, m = -0.72, sd = 0.55): partial argument
  match of 'm' to 'mean'
logima: warning in rnorm(N, m = 0.1, sd = 0.212): partial argument
  match of 'm' to 'mean'
logima: warning in dnorm(sim[, 1], m = -0.72, sd = 0.55): partial
  argument match of 'm' to 'mean'
logima: warning in dnorm(sim[, 2], m = 0.1, sd = 0.2121): partial
  argument match of 'm' to 'mean'
logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
  argument match of 'rep' to 'replace'
logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
  argument match of 'pro' to 'prob'
mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
  match of 'nro' to 'nrow'
mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
  match of 'nco' to 'ncol'
mhmix: warning in dnorm(prop, curmean, lo = T): partial argument match
  of 'lo' to 'log'
mhmix: warning in dnorm(the[iter, ], meanprop, lo = T): partial
  argument match of 'lo' to 'log'
mochoice : gocho: warning in sample(c(0, 1), lga, rep = T): partial
  argument match of 'rep' to 'replace'
pimamh : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
  "*"), log = T): partial argument match of 'log' to 'log.p'
pimamh : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN
  = "*"), log = T): partial argument match of 'log' to 'log.p'
pimamh: warning in dnorm(prop, mean = curmean, sd = scale, lo = T):
  partial argument match of 'lo' to 'log'
pimamh: warning in dnorm(the[t - 1, ], mean = propmean, sd = scale, lo
  = T): partial argument match of 'lo' to 'log'
pimamh: warning in matrix(0, ncol = 130, nro = 100): partial argument
  match of 'nro' to 'nrow'
pimax : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
  "*"), log = T): partial argument match of 'log' to 'log.p'
pimax : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN =
  "*"), log = T): partial argument match of 'log' to 'log.p'
pimax : newlike: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN
  = "*"), log = T): partial argument match of 'log' to 'log.p'
pimax : newlike: warning in pnorm(q = -a - outer(X = b, Y = da[, 2],
  FUN = "*"), log = T): partial argument match of 'log' to 'log.p'
randogibs: warning in sample(c(-1, 0, 1), n * m, rep = T): partial
  argument match of 'rep' to 'replace'
randogit: warning in sample(c(-1, 0, 1), n * m, rep = TRUE): partial
  argument match of 'rep' to 'replace'
SAmix : like: no visible binding for global variable 'da'
betagen: no visible binding for global variable 'x'
challenge: no visible binding for global variable 'challenger'
maximple: no visible global function definition for 'h'
randomeff: no visible binding for global variable 'Energy'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
NOTE: There were 2 notes.