* using log directory 'd:/Rcompile/CRANpkg/local/3.0/lsmeans.Rcheck' * using R version 3.0.3 (2014-03-06) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'lsmeans/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'lsmeans' version '2.17' * package encoding: latin1 * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: 'glmmADMB' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'lsmeans' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'tests1.R' Comparing 'tests1.Rout' to 'tests1.Rout.save' ...57,58c57,58 < Golden Rain 107.825 NA 4 NA NA < Victory 97.625 NA 4 NA NA --- > Golden Rain 107.825 3.658594 4 97.66711 117.9829 > Victory 97.625 3.092077 4 89.04002 106.2100 181c181 < Error in ref.grid(object = structure(list(coefficients = structure(c(39.9798298407204, : --- > Error in ref.grid(object = structure(list(coefficients = structure(c(39.9798298407202, : 304c304 < M effect == 0 -2.165 2.018 -1.072 0.53538 --- > M effect == 0 -2.165 2.018 -1.072 0.53536 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK NOTE: There was 1 note.