* using log directory 'd:/Rcompile/CRANpkg/local/3.0/lme4.Rcheck' * using R version 3.0.3 (2014-03-06) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'lme4/DESCRIPTION' ... OK * this is package 'lme4' version '1.1-7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'lme4' can be installed ... OK * checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: doc 1.3Mb libs 2.0Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'AAAtest-all.R' Running 'HSAURtrees.R' Running 'REMLdev.R' Running 'ST.R' Running 'agridat_gotway.R' Running 'bootMer.R' Running 'boundary.R' Running 'condVar.R' Running 'confint.R' Running 'devCritFun.R' Running 'devfunQ.R' Running 'drop.R' Running 'drop1contrasts.R' Running 'dynload.R' Running 'elston.R' Running 'evalCall.R' Running 'extras.R' Running 'falsezero_dorie.R' Running 'fewlevels.R' Running 'getME.R' Running 'glmer-1.R' Running 'glmerControlPass.R' Running 'glmerWarn.R' Running 'glmmExt.R' Running 'glmmWeights.R' Running 'hatvalues.R' Running 'is.R' Running 'lmList.R' Running 'lme4_nlme.R' Running 'lmer-0.R' Running 'lmer-1.R' Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...345d344 < start par. = 1 fn = 727.7419 347c346 < eval: 15 fn: 709.74472 par: 0.00000 --- > 15: 709.74472: 0.00000 Running 'lmer-conv.R' Running 'lmer2_ex.R' Running 'methods.R' Running 'minval.R' Running 'modFormula.R' Running 'nbinom.R' Running 'nlmer-conv.R' Running 'nlmer.R' Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK Running 'offset.R' Running 'optimizer.R' Running 'polytomous.R' Running 'prLogistic.R' Running 'predict.R' Running 'predict_basis.R' Running 'predsim.R' Running 'priorWeights.R' Running 'priorWeightsModComp.R' Running 'profile-tst.R' Running 'refit.R' Running 'resids.R' Running 'respiratory.R' Running 'simulate.R' Running 'testOptControl.R' Running 'test_times.R' Running 'testcolonizer.R' Running 'testcrab.R' Running 'throw.R' Running 'utils.R' Running 'varcorr.R' Running 'vcov-etc.R' ** running tests for arch 'x64' OK Running 'AAAtest-all.R' Running 'HSAURtrees.R' Running 'REMLdev.R' Running 'ST.R' Running 'agridat_gotway.R' Running 'bootMer.R' Running 'boundary.R' Running 'condVar.R' Running 'confint.R' Running 'devCritFun.R' Running 'devfunQ.R' Running 'drop.R' Running 'drop1contrasts.R' Running 'dynload.R' Running 'elston.R' Running 'evalCall.R' Running 'extras.R' Running 'falsezero_dorie.R' Running 'fewlevels.R' Running 'getME.R' Running 'glmer-1.R' Running 'glmerControlPass.R' Running 'glmerWarn.R' Running 'glmmExt.R' Running 'glmmWeights.R' Running 'hatvalues.R' Running 'is.R' Running 'lmList.R' Running 'lme4_nlme.R' Running 'lmer-0.R' Running 'lmer-1.R' Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...345d344 < start par. = 1 fn = 727.7419 347c346 < eval: 15 fn: 709.74472 par: 0.00000 --- > 15: 709.74472: 0.00000 Running 'lmer-conv.R' Running 'lmer2_ex.R' Running 'methods.R' Running 'minval.R' Running 'modFormula.R' Running 'nbinom.R' Running 'nlmer-conv.R' Running 'nlmer.R' Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ... OK Running 'offset.R' Running 'optimizer.R' Running 'polytomous.R' Running 'prLogistic.R' Running 'predict.R' Running 'predict_basis.R' Running 'predsim.R' Running 'priorWeights.R' Running 'priorWeightsModComp.R' Running 'profile-tst.R' Running 'refit.R' Running 'resids.R' Running 'respiratory.R' Running 'simulate.R' Running 'testOptControl.R' Running 'test_times.R' Running 'testcolonizer.R' Running 'testcrab.R' Running 'throw.R' Running 'utils.R' Running 'varcorr.R' Running 'vcov-etc.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK NOTE: There was 1 note.