* using log directory 'd:/Rcompile/CRANpkg/local/3.0/dpa.Rcheck' * using R version 3.0.3 (2014-03-06) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'dpa/DESCRIPTION' ... OK * this is package 'dpa' version '1.0-3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'dpa' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dpa.analysis.options : OnOK: warning in assign("rbVal", rbVal, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.options : OnOK : OnSave: warning in assign("time_column", time_column, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.options : OnOK : OnSave: warning in assign("intervalVal", intervalVal, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.options : OnOK : OnSave : dpa.analysis.options.ticks.enter: warning in assign("NumTick", NumTick, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.specifyModel: warning in assign("row", row, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.specifyModel: warning in assign("variables", baseVariables, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("sem", sem, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("sem.DPA", sem.DPA, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("sem.standardized", sem.standardized, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("relevantData", relevantData, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("sem.results.coefficients", sem.results.coefficients, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("sem.results.parameters", sem.results.parameters, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("sem.results.statistics", sem.results.statistics, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA : dpa.analysis.doPerform: warning in assign("listOfTicks", listOfTicks, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA: warning in assign("listOfTicks", NULL, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA: warning in assign("sem.DPA", NULL, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA: warning in assign("sem.standardized", NULL, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA: warning in assign("sem.results.parameters", NULL, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA: warning in assign("sem.results.statistics", NULL, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.performDPA: warning in assign("sem.results.coefficients", NULL, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.saveDPA: warning in assign("dpaFileName", dpaFileName, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadData: warning in assign("ak1", ak1, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDatabase: warning in assign("ak2", ak2, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDatabase: warning in assign("dbServerType", dbServerType, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDatabase: warning in assign("dbServer", dbServer, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDatabase: warning in assign("dbName", dbName, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDatabase: warning in assign("dbTable", dbTable, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDatabase: warning in assign("UserName", UserName, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDatabase: warning in assign("Password", Password, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDisk: warning in assign("dataFileName", dataFileName, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.data.loadDataFromDisk: warning in assign("e", e, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.generate.lag: warning in assign("dataframe", dataframe, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.incrementValue: warning in assign("i", i, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.relations.addRelations: warning in assign("relations", relations, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.relations.addRelations: warning in assign("time_column", time_column, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.relations.addRelations: warning in assign("e", e, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.relations.loadRelations: warning in assign("relations", relations, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.results.setGraphDir: warning in assign("graphDir", graphDir, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.results.viewNodePlots : dpa.results.plotNodes : dpa.plot.scatter: warning in png(file = paste(graphDir, "/scatter_", xcolumn, "_", ycolumn, "_", ".png", sep = ""), res = 300, width = 3000, height = 2000): partial argument match of 'file' to 'filename' dpa.results.viewNodePlots : dpa.results.plotNodesWithTime : dpa.plot.scatter: warning in png(file = paste(graphDir, "/scatter_", xcolumn, "_", ycolumn, "_", tick, ".png", sep = ""), res = 300, width = 3000, height = 2000): partial argument match of 'file' to 'filename' dpa.results.viewRelationsPlots : dpa.plot.graph: warning in png(file = paste(graphDir, "/graph_", "relation", ".png", sep = ""), res = 92, width = 1000, height = 1000): partial argument match of 'file' to 'filename' dpa.results.viewRelationsPlots : dpa.plot.graph: warning in png(file = paste(graphDir, "/graph_", "relation_", format(tickNumber, width = 4), ".png", sep = ""), res = 92, width = 1000, height = 1000): partial argument match of 'file' to 'filename' dpa.start: warning in assign("e", e, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("listOfTicks", listOfTicks, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("relations", relations, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("row", row, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("sem.DPA", sem.DPA, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("sem.results.coefficients", sem.results.coefficients, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("sem.results.parameters", sem.results.parameters, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("sem.results.statistics", sem.results.statistics, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("sem.standardized", sem.standardized, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("variables", variables, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.start: warning in assign("dpa", dpa, env = .GlobalEnv): partial argument match of 'env' to 'envir' dpa.analysis.options: no visible binding for global variable 'e' dpa.analysis.options : OnOK : OnSave: no visible binding for global variable 'e' dpa.analysis.performDPA : dpa.analysis.doPerform: no visible binding for global variable 'rbVal' dpa.analysis.performDPA : dpa.analysis.doPerform: no visible binding for global variable 'variables' dpa.analysis.performDPA : dpa.analysis.doPerform: no visible binding for global variable 'e' dpa.analysis.performDPA : dpa.analysis.doPerform: no visible binding for global variable 'NumTick' dpa.analysis.performDPA: no visible binding for global variable 'rbVal' dpa.analysis.performDPA: no visible binding for global variable 'sem.DPA' dpa.analysis.performDPA: no visible binding for global variable 'e' dpa.analysis.saveDPA: no visible binding for global variable 'dataFileName' dpa.analysis.saveDPA: no visible binding for global variable 'sem.results.coefficients' dpa.data.authenticationCancel: no visible binding for global variable 'ak2' dpa.data.authenticationSubmit: no visible binding for global variable 'dbServerType' dpa.data.authenticationSubmit: no visible binding for global variable 'dbServer' dpa.data.authenticationSubmit: no visible binding for global variable 'dbTable' dpa.data.authenticationSubmit: no visible binding for global variable 'UserName' dpa.data.authenticationSubmit: no visible binding for global variable 'Password' dpa.data.authenticationSubmit: no visible global function definition for 'JDBC' dpa.data.authenticationSubmit: no visible global function definition for 'dbConnect' dpa.data.authenticationSubmit: no visible global function definition for 'dbGetQuery' dpa.data.authenticationSubmit: no visible global function definition for 'dbReadTable' dpa.data.checkData : dpa.data.checkData.sort: no visible binding for global variable 'e' dpa.data.checkData : dpa.data.missingRow: no visible binding for global variable 'e' dpa.data.checkData : dpa.data.missingData: no visible binding for global variable 'e' dpa.data.loadCancel: no visible binding for global variable 'ak1' dpa.data.loadDataFromDatabase: no visible binding for global variable 'dpa.data.authentificationCancel' dpa.data.loadDataFromDisk: no visible binding for global variable 'ak1' dpa.data.saveDataToDisk: no visible binding for global variable 'e' dpa.exit: no visible binding for global variable 'dpa' dpa.relations.addRelations: no visible binding for global variable 'dataframe' dpa.relations.editRelations: no visible binding for global variable 'e' dpa.results.generateCoefficientsPlots : dpa.plot.graph: no visible binding for global variable 'sem.results.coefficients' dpa.results.generateCoefficientsPlots : dpa.plot.graph: no visible binding for global variable 'sem.results.parameters' dpa.results.generateCoefficientsPlots : dpa.plot.graph: no visible binding for global variable 'graphDir' dpa.results.generateCoefficientsPlots : dpa.plot.graph: no visible binding for global variable 'listOfTicks' dpa.results.generateCoefficientsPlots : dpa.plot.graph: no visible binding for global variable 'e' dpa.results.generateFitPlots : dpa.plot.graph: no visible binding for global variable 'sem.results.statistics' dpa.results.generateFitPlots : dpa.plot.graph: no visible binding for global variable 'graphDir' dpa.results.generateFitPlots : dpa.plot.graph: no visible binding for global variable 'listOfTicks' dpa.results.generateFitPlots : dpa.plot.graph: no visible binding for global variable 'e' dpa.results.viewNodePlots: no visible binding for global variable 'e' dpa.results.viewNodePlots : dpa.results.plotNodes : dpa.plot.scatter: no visible binding for global variable 'graphDir' dpa.results.viewNodePlots : dpa.results.plotNodes: no visible binding for global variable 'e' dpa.results.viewNodePlots : dpa.results.plotNodesWithTime: no visible binding for global variable 'e' dpa.results.viewNodePlots : dpa.results.plotNodesWithTime : dpa.plot.scatter: no visible binding for global variable 'graphDir' dpa.results.viewRelationsPlots : dpa.plot.graph: no visible binding for global variable 'rbVal' dpa.results.viewRelationsPlots : dpa.plot.graph: no visible binding for global variable 'graphDir' dpa.results.viewRelationsPlots : dpa.plot.graph: no visible binding for global variable 'sem.standardized' dpa.results.viewRelationsPlots: no visible binding for global variable 'variables' dpa.results.viewRelationsPlots: no visible binding for global variable 'e' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... OK NOTE: There was 1 note.