* using log directory 'd:/Rcompile/CRANpkg/local/3.0/dhglm.Rcheck' * using R version 3.0.3 (2014-03-06) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'dhglm/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dhglm' version '1.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'dhglm' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' calls to packages already attached by Depends: 'Matrix' 'boot' 'numDeriv' Please remove these calls from your code. See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dhglmfit: warning in HGLMFrames(mc, formulaMean, contrast = NULL): partial argument match of 'contrast' to 'contrasts' dhglmfit: warning in HGLMFrames(mc, formulaLambda, contrast = NULL): partial argument match of 'contrast' to 'contrasts' dhglmfit: warning in HGLMFrames(mc, formulaDisp, contrast = NULL): partial argument match of 'contrast' to 'contrasts' dhglmfit: warning in glm(y ~ x - 1, family = gaussian(link = RespLink), weight = inv_disp, offset = Offset): partial argument match of 'weight' to 'weights' dhglmfit: warning in glm(y ~ x - 1, family = poisson(link = RespLink), weight = inv_disp, offset = Offset): partial argument match of 'weight' to 'weights' dhglmfit: warning in glm(cbind(y, BinomialDen - y) ~ x - 1, family = binomial(link = RespLink), weight = inv_disp, offset = Offset): partial argument match of 'weight' to 'weights' dhglmfit: warning in glm(y ~ x - 1, family = Gamma(link = RespLink), weight = inv_disp, offset = Offset): partial argument match of 'weight' to 'weights' dhglmfit: warning in glm(resp_disp ~ x_disp - 1, family = Gamma(link = RespLink_disp), weight = weight_disp, offset = Offset_disp): partial argument match of 'weight' to 'weights' expandSlash : : no visible global function definition for 'makeInteraction' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK NOTE: There were 2 notes.