* using log directory 'd:/Rcompile/CRANpkg/local/3.0/coxme.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'coxme/DESCRIPTION' ... OK
* this is package 'coxme' version '2.2-4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'coxme' can be installed ... WARNING
Found the following significant warnings:
  Warning: D:/temp/RtmpSgj1wz/R.INSTALL2c5c17433d20/coxme/man/VarCorr.Rd: docType 'import' is unrecognized
  Warning: D:/temp/RtmpSgj1wz/R.INSTALL2c5c17433d20/coxme/man/fixed.effects.Rd: docType 'import' is unrecognized
  Warning: D:/temp/RtmpSgj1wz/R.INSTALL2c5c17433d20/coxme/man/ranef.Rd: docType 'import' is unrecognized
See 'd:/Rcompile/CRANpkg/local/3.0/coxme.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'survival:::anova.coxmelist'
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: VarCorr.Rd: docType 'import' is unrecognized
prepare_Rd: fixed.effects.Rd: docType 'import' is unrecognized
prepare_Rd: ranef.Rd: docType 'import' is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'bdstest.R'
  Comparing 'bdstest.Rout' to 'bdstest.Rout.save' ...16,22d15
< 
< Attaching package: 'Matrix'
< 
< The following objects are masked from 'package:base':
< 
<     crossprod, tcrossprod
< 
  Running 'brfit.R'
  Running 'lmekin1.R'
  Comparing 'lmekin1.Rout' to 'lmekin1.Rout.save' ... OK
  Running 'lmekin2.R'
  Comparing 'lmekin2.Rout' to 'lmekin2.Rout.save' ... OK
  Running 'nest1.R'
  Comparing 'nest1.Rout' to 'nest1.Rout.save' ... OK
  Running 'nest2.R'
  Comparing 'nest2.Rout' to 'nest2.Rout.save' ... OK
  Running 'refine.R'
  Comparing 'refine.Rout' to 'refine.Rout.save' ... OK
  Running 'refine1.R'
  Comparing 'refine1.Rout' to 'refine1.Rout.save' ... OK
  Running 'refine2.R'
  Comparing 'refine2.Rout' to 'refine2.Rout.save' ... OK
  Running 'refine3.R'
  Comparing 'refine3.Rout' to 'refine3.Rout.save' ... OK
  Running 'shrink.R'
  Comparing 'shrink.Rout' to 'shrink.Rout.save' ... OK
  Running 'slope1.R'
  Comparing 'slope1.Rout' to 'slope1.Rout.save' ... OK
  Running 'slope2.R'
  Comparing 'slope2.Rout' to 'slope2.Rout.save' ... OK
  Running 'slope3.R'
  Comparing 'slope3.Rout' to 'slope3.Rout.save' ... OK
  Running 'slope4.R'
  Comparing 'slope4.Rout' to 'slope4.Rout.save' ... OK
  Running 'strata1.R'
  Comparing 'strata1.Rout' to 'strata1.Rout.save' ... OK
  Running 'test0.R'
  Comparing 'test0.Rout' to 'test0.Rout.save' ... OK
  Running 'test1.R'
  Comparing 'test1.Rout' to 'test1.Rout.save' ... OK
  Running 'test2.R'
  Comparing 'test2.Rout' to 'test2.Rout.save' ... OK
  Running 'test3.R'
  Comparing 'test3.Rout' to 'test3.Rout.save' ... OK
  Running 'test4.R'
  Comparing 'test4.Rout' to 'test4.Rout.save' ... OK
  Running 'twoterm.R'
  Comparing 'twoterm.Rout' to 'twoterm.Rout.save' ...87c87
< [1] "Component 2: Mean relative difference: 2.069803e-08"
---
> [1] TRUE
** running tests for arch 'x64' OK
  Running 'bdstest.R'
  Comparing 'bdstest.Rout' to 'bdstest.Rout.save' ...16,22d15
< 
< Attaching package: 'Matrix'
< 
< The following objects are masked from 'package:base':
< 
<     crossprod, tcrossprod
< 
  Running 'brfit.R'
  Running 'lmekin1.R'
  Comparing 'lmekin1.Rout' to 'lmekin1.Rout.save' ... OK
  Running 'lmekin2.R'
  Comparing 'lmekin2.Rout' to 'lmekin2.Rout.save' ... OK
  Running 'nest1.R'
  Comparing 'nest1.Rout' to 'nest1.Rout.save' ... OK
  Running 'nest2.R'
  Comparing 'nest2.Rout' to 'nest2.Rout.save' ... OK
  Running 'refine.R'
  Comparing 'refine.Rout' to 'refine.Rout.save' ... OK
  Running 'refine1.R'
  Comparing 'refine1.Rout' to 'refine1.Rout.save' ... OK
  Running 'refine2.R'
  Comparing 'refine2.Rout' to 'refine2.Rout.save' ... OK
  Running 'refine3.R'
  Comparing 'refine3.Rout' to 'refine3.Rout.save' ... OK
  Running 'shrink.R'
  Comparing 'shrink.Rout' to 'shrink.Rout.save' ... OK
  Running 'slope1.R'
  Comparing 'slope1.Rout' to 'slope1.Rout.save' ... OK
  Running 'slope2.R'
  Comparing 'slope2.Rout' to 'slope2.Rout.save' ... OK
  Running 'slope3.R'
  Comparing 'slope3.Rout' to 'slope3.Rout.save' ... OK
  Running 'slope4.R'
  Comparing 'slope4.Rout' to 'slope4.Rout.save' ... OK
  Running 'strata1.R'
  Comparing 'strata1.Rout' to 'strata1.Rout.save' ... OK
  Running 'test0.R'
  Comparing 'test0.Rout' to 'test0.Rout.save' ... OK
  Running 'test1.R'
  Comparing 'test1.Rout' to 'test1.Rout.save' ... OK
  Running 'test2.R'
  Comparing 'test2.Rout' to 'test2.Rout.save' ... OK
  Running 'test3.R'
  Comparing 'test3.Rout' to 'test3.Rout.save' ... OK
  Running 'test4.R'
  Comparing 'test4.Rout' to 'test4.Rout.save' ... OK
  Running 'twoterm.R'
  Comparing 'twoterm.Rout' to 'twoterm.Rout.save' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
WARNING: There were 2 warnings.
NOTE: There was 1 note.