* using log directory 'd:/Rcompile/CRANpkg/local/3.0/ade4.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'ade4/DESCRIPTION' ... OK
* this is package 'ade4' version '1.7-2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ade4' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data       1.9Mb
    pictures   2.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'ade4-Ex.R' failed
The error most likely occurred in:

> ### Name: westafrica
> ### Title: Freshwater fish zoogeography in west Africa
> ### Aliases: westafrica
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(westafrica)
> 
> if(!adegraphicsLoaded()) {
+   s.label(westafrica$cadre, xlim = c(30, 500), ylim = c(50, 290),
+     cpoi = 0, clab = 0, grid = FALSE, addax = 0)
+   old.par <- par(no.readonly = TRUE)
+   par(mar = c(0.1, 0.1, 0.1, 0.1))
+   rect(30, 0, 500, 290)
+   polygon(westafrica$atlantic, col = "lightblue")
+   points(westafrica$riv.xy, pch = 20, cex = 1.5)
+   apply(westafrica$lines, 1, function(x) segments(x[1], x[2], x[3], x[4], lwd = 1))
+   apply(westafrica$riv.xy,1, function(x) segments(x[1], x[2], x[3], x[4], lwd = 1))
+   text(c(175, 260, 460, 420), c(275, 200, 250, 100), c("Senegal", "Niger", "Niger", "Volta"))
+   par(srt = 270)
+   text(westafrica$riv.xy$x2, westafrica$riv.xy$y2-10, westafrica$riv.names, adj = 0, cex = 0.75)
+   par(old.par)
+   rm(old.par)
+ }
> 
> # multivariate analysis
> afri.w <- data.frame(t(westafrica$tab))
> afri.dist <- dist.binary(afri.w,1)
> afri.pco <- dudi.pco(afri.dist, scan = FALSE, nf = 3)
> if(adegraphicsLoaded()) {
+   G1 <- s1d.barchart(afri.pco$li[, 1:3], p1d.hori = F, plab.cex = 0)
+ } else {
+   par(mfrow = c(3, 1))
+   barplot(afri.pco$li[, 1])
+   barplot(afri.pco$li[, 2])
+   barplot(afri.pco$li[, 3])
+ }
> 
> if(requireNamespace("spdep", quiet = TRUE)) {
+   # multivariate spatial analysis
+   afri.neig <- neig(n.line = 33)
+   afri.nb <- neig2nb(afri.neig)
+   afri.listw <- nb2listw(afri.nb)
+   afri.ms <- multispati(afri.pco, afri.listw, scan = FALSE, nfposi = 6, nfnega = 0)
+   
+   if(adegraphicsLoaded()) {
+     G2 <- s1d.barchart(afri.ms$li[, 1:3], p1d.hori = F, plab.cex = 0)
+     
+     g31 <- s.label(afri.ms$li, plab.cex = 0.75, ppoi.cex = 0, nb = afri.nb, plot = F)
+     g32 <- s.value(afri.ms$li, afri.ms$li[, 3], plot = F)
+     g33 <- s.value(afri.ms$li, afri.ms$li[, 4], plot = F)
+     g34 <- s.value(afri.ms$li, afri.ms$li[, 5], plot = F)
+     G3 <- ADEgS(list(g31, g32, g33, g34), layout = c(2, 2))
+     
+   } else {
+     par(mfrow = c(3, 1))
+     barplot(afri.ms$li[, 1])
+     barplot(afri.ms$li[, 2])
+     barplot(afri.ms$li[, 3])
+     
+     par(mfrow = c(2, 2))
+     s.label(afri.ms$li, clab = 0.75, cpoi = 0, neig = afri.neig, cneig = 1.5)
+     s.value(afri.ms$li, afri.ms$li[, 3])
+     s.value(afri.ms$li, afri.ms$li[, 4])
+     s.value(afri.ms$li, afri.ms$li[, 5])
+   }
+   summary(afri.ms)
+ }
Loading required namespace: spdep
Failed with error:  'unused argument (quiet = TRUE)'
> 
> par(mfrow = c(1, 1))
> plot(hclust(afri.dist, "ward.D"), h = -0.2)
Error in hclust(afri.dist, "ward.D") : invalid clustering method
Calls: plot -> hclust
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'ade4-Ex.R' failed
The error most likely occurred in:

> ### Name: westafrica
> ### Title: Freshwater fish zoogeography in west Africa
> ### Aliases: westafrica
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(westafrica)
> 
> if(!adegraphicsLoaded()) {
+   s.label(westafrica$cadre, xlim = c(30, 500), ylim = c(50, 290),
+     cpoi = 0, clab = 0, grid = FALSE, addax = 0)
+   old.par <- par(no.readonly = TRUE)
+   par(mar = c(0.1, 0.1, 0.1, 0.1))
+   rect(30, 0, 500, 290)
+   polygon(westafrica$atlantic, col = "lightblue")
+   points(westafrica$riv.xy, pch = 20, cex = 1.5)
+   apply(westafrica$lines, 1, function(x) segments(x[1], x[2], x[3], x[4], lwd = 1))
+   apply(westafrica$riv.xy,1, function(x) segments(x[1], x[2], x[3], x[4], lwd = 1))
+   text(c(175, 260, 460, 420), c(275, 200, 250, 100), c("Senegal", "Niger", "Niger", "Volta"))
+   par(srt = 270)
+   text(westafrica$riv.xy$x2, westafrica$riv.xy$y2-10, westafrica$riv.names, adj = 0, cex = 0.75)
+   par(old.par)
+   rm(old.par)
+ }
> 
> # multivariate analysis
> afri.w <- data.frame(t(westafrica$tab))
> afri.dist <- dist.binary(afri.w,1)
> afri.pco <- dudi.pco(afri.dist, scan = FALSE, nf = 3)
> if(adegraphicsLoaded()) {
+   G1 <- s1d.barchart(afri.pco$li[, 1:3], p1d.hori = F, plab.cex = 0)
+ } else {
+   par(mfrow = c(3, 1))
+   barplot(afri.pco$li[, 1])
+   barplot(afri.pco$li[, 2])
+   barplot(afri.pco$li[, 3])
+ }
> 
> if(requireNamespace("spdep", quiet = TRUE)) {
+   # multivariate spatial analysis
+   afri.neig <- neig(n.line = 33)
+   afri.nb <- neig2nb(afri.neig)
+   afri.listw <- nb2listw(afri.nb)
+   afri.ms <- multispati(afri.pco, afri.listw, scan = FALSE, nfposi = 6, nfnega = 0)
+   
+   if(adegraphicsLoaded()) {
+     G2 <- s1d.barchart(afri.ms$li[, 1:3], p1d.hori = F, plab.cex = 0)
+     
+     g31 <- s.label(afri.ms$li, plab.cex = 0.75, ppoi.cex = 0, nb = afri.nb, plot = F)
+     g32 <- s.value(afri.ms$li, afri.ms$li[, 3], plot = F)
+     g33 <- s.value(afri.ms$li, afri.ms$li[, 4], plot = F)
+     g34 <- s.value(afri.ms$li, afri.ms$li[, 5], plot = F)
+     G3 <- ADEgS(list(g31, g32, g33, g34), layout = c(2, 2))
+     
+   } else {
+     par(mfrow = c(3, 1))
+     barplot(afri.ms$li[, 1])
+     barplot(afri.ms$li[, 2])
+     barplot(afri.ms$li[, 3])
+     
+     par(mfrow = c(2, 2))
+     s.label(afri.ms$li, clab = 0.75, cpoi = 0, neig = afri.neig, cneig = 1.5)
+     s.value(afri.ms$li, afri.ms$li[, 3])
+     s.value(afri.ms$li, afri.ms$li[, 4])
+     s.value(afri.ms$li, afri.ms$li[, 5])
+   }
+   summary(afri.ms)
+ }
Loading required namespace: spdep
Failed with error:  'unused argument (quiet = TRUE)'
> 
> par(mfrow = c(1, 1))
> plot(hclust(afri.dist, "ward.D"), h = -0.2)
Error in hclust(afri.dist, "ward.D") : invalid clustering method
Calls: plot -> hclust
Execution halted