* using log directory 'd:/Rcompile/CRANpkg/local/3.0/SCEPtER.Rcheck' * using R version 3.0.3 (2014-03-06) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'SCEPtER/DESCRIPTION' ... OK * this is package 'SCEPtER' version '0.2-0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SCEPtER' can be installed ... OK * checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: data 6.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... ERROR Running examples in 'SCEPtER-Ex.R' failed The error most likely occurred in: > ### Name: estimate > ### Title: Mass, radius, and age estimates for the supplied objects > ### Aliases: estimate > ### Keywords: manip > > ### ** Examples > > # Solar seismic data from Thiery et al. (2000) > Dnisun <- 134.8 > nimaxsun <- 3034 > > # Observational data for alpha Cent B from: > # Kjeldsen et al. (2005), Porto de Mello et al. (2008) > # Observed mass and radius: 0.935 +- 0.006, 0.863 +- 0.005 > # from Miglio & Montalban (2005) > acenB <- c(5316, 0, 0.25, 161.5/Dnisun, 4100/nimaxsun, 0.935, 0.863) > sigmaCen <- c(30, 0, 0.04, 0.01, 0.05, 0.006/0.935, 0.005/0.863) > > # Load the standard estimation grid > data(stdGrid) > > # order standard grid by effective temperature (required by estimate) > ii <- do.call(order, as.data.frame(stdGrid[,1])) > oGrid <- stdGrid[ii, ] > > # For accurate estimates adopt at least NUM=10000 > NUM <- 200 > # obtain NUM copies of the object and add Gaussian perturbations > star <- matrix(acenB, byrow=TRUE, nrow=NUM, ncol=7) > starp <- errorObs(sigmaCen, star) > > # select the observational constraints > # using Teff, [Fe/H], Delta nu, nu_max > vsel <- c(1,0,1,1,1,0,0) > > # call the estimation routines > res <- estimate(oGrid, starp, sigmaCen, 3, vsel) Error in rep(no, length.out = length(ans)) : attempt to replicate an object of type 'closure' Calls: estimate -> ifelse Execution halted ** running examples for arch 'x64' ... ERROR Running examples in 'SCEPtER-Ex.R' failed The error most likely occurred in: > ### Name: estimate > ### Title: Mass, radius, and age estimates for the supplied objects > ### Aliases: estimate > ### Keywords: manip > > ### ** Examples > > # Solar seismic data from Thiery et al. (2000) > Dnisun <- 134.8 > nimaxsun <- 3034 > > # Observational data for alpha Cent B from: > # Kjeldsen et al. (2005), Porto de Mello et al. (2008) > # Observed mass and radius: 0.935 +- 0.006, 0.863 +- 0.005 > # from Miglio & Montalban (2005) > acenB <- c(5316, 0, 0.25, 161.5/Dnisun, 4100/nimaxsun, 0.935, 0.863) > sigmaCen <- c(30, 0, 0.04, 0.01, 0.05, 0.006/0.935, 0.005/0.863) > > # Load the standard estimation grid > data(stdGrid) > > # order standard grid by effective temperature (required by estimate) > ii <- do.call(order, as.data.frame(stdGrid[,1])) > oGrid <- stdGrid[ii, ] > > # For accurate estimates adopt at least NUM=10000 > NUM <- 200 > # obtain NUM copies of the object and add Gaussian perturbations > star <- matrix(acenB, byrow=TRUE, nrow=NUM, ncol=7) > starp <- errorObs(sigmaCen, star) > > # select the observational constraints > # using Teff, [Fe/H], Delta nu, nu_max > vsel <- c(1,0,1,1,1,0,0) > > # call the estimation routines > res <- estimate(oGrid, starp, sigmaCen, 3, vsel) Error in rep(no, length.out = length(ans)) : attempt to replicate an object of type 'closure' Calls: estimate -> ifelse Execution halted