* using log directory 'd:/Rcompile/CRANpkg/local/3.0/OligoSpecificitySystem.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'OligoSpecificitySystem/DESCRIPTION' ... OK
* this is package 'OligoSpecificitySystem' version '1.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OligoSpecificitySystem' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calc2: warning in matrix(nr = 1, nc = 3): partial argument match of
  'nr' to 'nrow'
calc2: warning in matrix(nr = 1, nc = 3): partial argument match of
  'nc' to 'ncol'
calc3: warning in matrix(nr = 1, nc = 7): partial argument match of
  'nr' to 'nrow'
calc3: warning in matrix(nr = 1, nc = 7): partial argument match of
  'nc' to 'ncol'
OSS: no visible binding for '<<-' assignment to 'ONDB1name'
OSS: no visible binding for '<<-' assignment to 'ONDB2name'
OSS: no visible binding for '<<-' assignment to 'ONDB3name'
OSS: no visible binding for '<<-' assignment to 'ONDB4name'
OSS : .write: no visible binding for global variable 'ONDB1name'
OSS : .write: no visible binding for global variable 'ONDB2name'
OSS : .write: no visible binding for global variable 'ONDB3name'
OSS : .write: no visible binding for global variable 'ONDB4name'
OSS : run: no visible binding for global variable 'txt'
OSS : example1: no visible binding for '<<-' assignment to 'ONDB1name'
OSS : example1: no visible binding for global variable 'fil'
OSS : example1: no visible binding for global variable 'separator'
OSS : example2: no visible binding for '<<-' assignment to 'ONDB2name'
OSS : example2: no visible binding for global variable 'fil'
OSS : example2: no visible binding for global variable 'separator'
OSS : example3: no visible binding for '<<-' assignment to 'ONDB3name'
OSS : example3: no visible binding for global variable 'fil'
OSS : example3: no visible binding for global variable 'separator'
OSS : reset1: no visible binding for '<<-' assignment to 'ONDB1name'
OSS : reset2: no visible binding for '<<-' assignment to 'ONDB2name'
OSS : reset3: no visible binding for '<<-' assignment to 'ONDB3name'
OSS : reset4: no visible binding for '<<-' assignment to 'ONDB4name'
OSS : OnOk: no visible binding for global variable 'Name'
OSS : OnOk: no visible binding for global variable 'Namenbseq'
OSS : calc: no visible binding for global variable 'txt4'
OSS : calc: no visible binding for global variable 'txt3'
OSS : dprim: no visible binding for global variable 'txt4'
OSS : dprim: no visible binding for global variable 'txt3'
OSS : effic: no visible binding for global variable 'txt4'
OSS : effic: no visible binding for global variable 'txt3'
OSS : impr: no visible binding for global variable 'txt4'
OSS : impr: no visible binding for global variable 'txt3'
OSS: no visible binding for '<<-' assignment to 'Name'
OSS: no visible binding for global variable 'Name'
OSS: no visible binding for '<<-' assignment to 'Namenbseq'
OSS: no visible binding for global variable 'Namenbseq'
OnOk: no visible binding for global variable 'Name'
OnOk: no visible binding for global variable 'Namenbseq'
calc2: no visible binding for global variable 'txt1'
calc2: no visible binding for global variable 'txt2'
calc3: no visible binding for global variable 'txt1'
calc3: no visible binding for global variable 'txt2'
calc3: no visible binding for global variable 'txt3'
concatenate: no visible binding for global variable 'txt3'
concatenate: no visible binding for global variable 'txt4'
concatenate: no visible binding for global variable 'txt1'
concatenate: no visible binding for global variable 'txt2'
concatenate : calc: no visible binding for '<<-' assignment to 'txt1'
concatenate : calc: no visible binding for '<<-' assignment to 'txt2'
concatenate : calc: no visible binding for '<<-' assignment to 'txt3'
concatenate : calc: no visible binding for '<<-' assignment to
  'ONDB1name'
concatenate : calc: no visible binding for '<<-' assignment to
  'ONDB2name'
concatenate : calc: no visible binding for '<<-' assignment to
  'ONDB3name'
dbb1: no visible binding for '<<-' assignment to 'ONDB1name'
dbb1: no visible binding for global variable 'separator'
dbb2: no visible binding for '<<-' assignment to 'ONDB2name'
dbb2: no visible binding for global variable 'separator'
dbb3: no visible binding for '<<-' assignment to 'ONDB3name'
dbb3: no visible binding for global variable 'separator'
dbb4: no visible binding for global variable 'separator'
dbb4: no visible binding for global variable 'txt1'
dbb4: no visible binding for global variable 'txt2'
dbb4: no visible binding for global variable 'txt3'
dbb4: no visible binding for '<<-' assignment to 'ONDB4name'
degencal2 : temp: no visible binding for global variable 'nbsequence'
degencal2 : temp: no visible binding for global variable 'zz1'
degencal3 : temp: no visible binding for global variable 'nbsequence'
degencal3 : temp: no visible binding for global variable 'zz1'
degencal4: no visible binding for global variable 'txt1'
degencal4: no visible binding for global variable 'txt2'
degencal4: no visible binding for global variable 'txt3'
degencal4: no visible binding for global variable 'txt4'
degencal4: no visible binding for global variable 'nbsequence'
exportglobal: no visible binding for global variable 'txt1'
exportglobal: no visible binding for global variable 'txt2'
exportglobal: no visible binding for global variable 'txt3'
exportglobal: no visible binding for global variable 'newdb'
glob2d : temp : normal_prct: no visible binding for global variable
  'zz1'
glob2d : temp : normal_prct: no visible binding for global variable
  'nbsequence'
glob2d : temp : normal: no visible binding for global variable 'zz1'
glob2d : temp: no visible binding for global variable 'nbsequence'
glob3d : temp : normal: no visible binding for global variable 'zz1'
glob3d : temp : normal_prct: no visible binding for global variable
  'zz1'
glob3d : temp : normal_prct: no visible binding for global variable
  'nbsequence'
glob3d : temp: no visible binding for global variable 'nbsequence'
impr2d : temp: no visible binding for global variable 'nbsequence'
impr2d : temp: no visible binding for global variable 'zz1'
impr3d : temp: no visible binding for global variable 'nbsequence'
impr3d : temp: no visible binding for global variable 'zz1'
optxt: no visible binding for '<<-' assignment to 'fil'
optxt: no visible binding for global variable 'bg'
pcrcal2 : temp: no visible binding for global variable 'zz1'
pcrcal2 : temp : normal_prct: no visible binding for global variable
  'nbsequence'
pcrcal2 : temp: no visible binding for global variable 'nbsequence'
pcrcal3 : temp: no visible binding for global variable 'nbsequence'
pcrcal3 : temp: no visible binding for global variable 'zz1'
pcrcal4: no visible binding for global variable 'myfiles'
pcrcal4: no visible binding for global variable 'txt1'
pcrcal4: no visible binding for global variable 'txt2'
pcrcal4: no visible binding for global variable 'txt3'
pcrcal4: no visible binding for global variable 'txt4'
pcrcal4: no visible binding for global variable 'nbsequence'
security: no visible binding for global variable 'txt4'
security: no visible binding for global variable 'txt1'
security: no visible binding for global variable 'txt2'
security: no visible binding for global variable 'txt3'
waitGUI: no visible binding for '<<-' assignment to 'z'
waitGUI: no visible binding for global variable 'z'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
NOTE: There was 1 note.