* using log directory 'd:/Rcompile/CRANpkg/local/2.12/robust.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'robust/DESCRIPTION' ... OK
* this is package 'robust' version '0.3-11'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'robust' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
lmRob.fit.compute: no visible global function definition for
  'guiDisplayDialog'
lmRob.fit.compute: no visible binding for global variable 'yes.p'
plot.covfm: no visible global function definition for 'guiModify'
plot.glmfm: no visible global function definition for 'guiModify'
plot.lmfm: no visible global function definition for 'guiModify'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** checking differences from 'robust-Ex_i386.Rout' to 'robust-Ex.Rout.save' ...
2c2,3
< Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
---
> pcaPP 0.1-1 loaded
> Scalable Robust Estimators with High Breakdown Point (version 0.5-02)
6c7,8
< The following object(s) are masked from 'package:stats':
---
> 
> 	The following object(s) are masked from package:stats :
12,13c14,15
< > cleanEx()
< > nameEx("add1.lmRob")
---
> > assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
> > cleanEx(); nameEx("add1.lmRob")
42,43c44
< > cleanEx()
< > nameEx("anova.glmRob")
---
> > cleanEx(); nameEx("anova.glmRob")
81,82c82
< > cleanEx()
< > nameEx("anova.lmRob")
---
> > cleanEx(); nameEx("anova.lmRob")
112,113c112,113
< [1,]     1   1                        
< [2,]     2   1  1  27.354 9.84e-08 ***
---
> [1,]  1.000  1.000                        
> [2,]  2.000  1.000  1  27.354 9.84e-08 ***
119,120c119
< > cleanEx()
< > nameEx("arg.names")
---
> > cleanEx(); nameEx("arg.names")
137,138c136
< > cleanEx()
< > nameEx("breslow.dat")
---
> > cleanEx(); nameEx("breslow.dat")
154,155c152
< > cleanEx()
< > nameEx("ccov")
---
> > cleanEx(); nameEx("ccov")
185,186c182
< > cleanEx()
< > nameEx("coef.glmfm")
---
> > cleanEx(); nameEx("coef.glmfm")
209,210c205
< > cleanEx()
< > nameEx("coef.lmfm")
---
> > cleanEx(); nameEx("coef.lmfm")
231,232c226
< > cleanEx()
< > nameEx("covRob")
---
> > cleanEx(); nameEx("covRob")
262,263c256
< > cleanEx()
< > nameEx("covRob.control")
---
> > cleanEx(); nameEx("covRob.control")
283,284c276
< > cleanEx()
< > nameEx("covfmDistance2Plot")
---
> > cleanEx(); nameEx("covfmDistance2Plot")
303,304c295
< > cleanEx()
< > nameEx("covfmEllipsesPlot")
---
> > cleanEx(); nameEx("covfmEllipsesPlot")
323,324c314
< > cleanEx()
< > nameEx("covfmScreePlot")
---
> > cleanEx(); nameEx("covfmScreePlot")
343,344c333
< > cleanEx()
< > nameEx("covfmSqrtMDPlot")
---
> > cleanEx(); nameEx("covfmSqrtMDPlot")
363,364c352
< > cleanEx()
< > nameEx("drop1.lmRob")
---
> > cleanEx(); nameEx("drop1.lmRob")
395,396c383
< > cleanEx()
< > nameEx("fit.models")
---
> > cleanEx(); nameEx("fit.models")
419,420c406
< > cleanEx()
< > nameEx("get.fit.models.database")
---
> > cleanEx(); nameEx("get.fit.models.database")
514,515c500
< > cleanEx()
< > nameEx("glmRob")
---
> > cleanEx(); nameEx("glmRob")
546,547c531
< > cleanEx()
< > nameEx("glmRob.mallows")
---
> > cleanEx(); nameEx("glmRob.mallows")
575,576c559
< > cleanEx()
< > nameEx("glmRob.misclass")
---
> > cleanEx(); nameEx("glmRob.misclass")
606,607c589
< > cleanEx()
< > nameEx("leuk.dat")
---
> > cleanEx(); nameEx("leuk.dat")
623,624c605
< > cleanEx()
< > nameEx("lmRob")
---
> > cleanEx(); nameEx("lmRob")
641,642c622
< > cleanEx()
< > nameEx("lmRob.RFPE")
---
> > cleanEx(); nameEx("lmRob.RFPE")
661,662c641
< > cleanEx()
< > nameEx("lmRob.control")
---
> > cleanEx(); nameEx("lmRob.control")
680,681c659
< > cleanEx()
< > nameEx("mallows.dat")
---
> > cleanEx(); nameEx("mallows.dat")
697,698c675
< > cleanEx()
< > nameEx("methods.glmRob")
---
> > cleanEx(); nameEx("methods.glmRob")
877,878c854
< > cleanEx()
< > nameEx("methods.lmRob")
---
> > cleanEx(); nameEx("methods.lmRob")
965,966c941
< > cleanEx()
< > nameEx("plot.covfm")
---
> > cleanEx(); nameEx("plot.covfm")
990,991c965
< > cleanEx()
< > nameEx("plot.lmRob")
---
> > cleanEx(); nameEx("plot.lmRob")
1009,1010c983
< > cleanEx()
< > nameEx("plot.lmfm")
---
> > cleanEx(); nameEx("plot.lmfm")
1028,1029c1001
< > cleanEx()
< > nameEx("predict.glmRob")
---
> > cleanEx(); nameEx("predict.glmRob")
1063,1064c1035
< > cleanEx()
< > nameEx("predict.lmRob")
---
> > cleanEx(); nameEx("predict.lmRob")
1103,1104c1074
< > cleanEx()
< > nameEx("print.covfm")
---
> > cleanEx(); nameEx("print.covfm")
1177,1178c1147
< > cleanEx()
< > nameEx("print.glmRob")
---
> > cleanEx(); nameEx("print.glmRob")
1221,1222c1190
< > cleanEx()
< > nameEx("print.glmfm")
---
> > cleanEx(); nameEx("print.glmfm")
1279,1280c1247
< > cleanEx()
< > nameEx("print.lmRob")
---
> > cleanEx(); nameEx("print.lmRob")
1317,1318c1284
< > cleanEx()
< > nameEx("print.lmfm")
---
> > cleanEx(); nameEx("print.lmfm")
1351,1352c1317
< > cleanEx()
< > nameEx("print.summary.covfm")
---
> > cleanEx(); nameEx("print.summary.covfm")
1455,1456c1420
< > cleanEx()
< > nameEx("print.summary.glmRob")
---
> > cleanEx(); nameEx("print.summary.glmRob")
1534,1535c1498
< > cleanEx()
< > nameEx("print.summary.glmfm")
---
> > cleanEx(); nameEx("print.summary.glmfm")
1613,1614c1576
< > cleanEx()
< > nameEx("print.summary.lmRob")
---
> > cleanEx(); nameEx("print.summary.lmRob")
1653,1654c1615
< > cleanEx()
< > nameEx("print.summary.lmfm")
---
> > cleanEx(); nameEx("print.summary.lmfm")
1742,1743c1703
< > cleanEx()
< > nameEx("stack.dat")
---
> > cleanEx(); nameEx("stack.dat")
1782,1783c1742
< > cleanEx()
< > nameEx("step.lmRob")
---
> > cleanEx(); nameEx("step.lmRob")
1854d1812
< > 
1884,1885c1842
< > cleanEx()
< > nameEx("summary.covfm")
---
> > cleanEx(); nameEx("summary.covfm")
1910,1911c1867
< > cleanEx()
< > nameEx("summary.glmRob")
---
> > cleanEx(); nameEx("summary.glmRob")
1959,1960c1915
< > cleanEx()
< > nameEx("summary.glmfm")
---
> > cleanEx(); nameEx("summary.glmfm")
2009,2010c1964
< > cleanEx()
< > nameEx("summary.lmRob")
---
> > cleanEx(); nameEx("summary.lmRob")
2078,2079c2032
< > cleanEx()
< > nameEx("summary.lmfm")
---
> > cleanEx(); nameEx("summary.lmfm")
2132,2133c2085
< > cleanEx()
< > nameEx("weight.funs")
---
> > cleanEx(); nameEx("weight.funs")
2161,2162c2113
< > cleanEx()
< > nameEx("woodmod.dat")
---
> > cleanEx(); nameEx("woodmod.dat")
 OK
** running examples for arch 'x64' ... OK
** checking differences from 'robust-Ex_x64.Rout' to 'robust-Ex.Rout.save' ...
2c2,3
< Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
---
> pcaPP 0.1-1 loaded
> Scalable Robust Estimators with High Breakdown Point (version 0.5-02)
6c7,8
< The following object(s) are masked from 'package:stats':
---
> 
> 	The following object(s) are masked from package:stats :
12,13c14,15
< > cleanEx()
< > nameEx("add1.lmRob")
---
> > assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
> > cleanEx(); nameEx("add1.lmRob")
42,43c44
< > cleanEx()
< > nameEx("anova.glmRob")
---
> > cleanEx(); nameEx("anova.glmRob")
81,82c82
< > cleanEx()
< > nameEx("anova.lmRob")
---
> > cleanEx(); nameEx("anova.lmRob")
112,113c112,113
< [1,]     1   1                        
< [2,]     2   1  1  27.354 9.84e-08 ***
---
> [1,]  1.000  1.000                        
> [2,]  2.000  1.000  1  27.354 9.84e-08 ***
119,120c119
< > cleanEx()
< > nameEx("arg.names")
---
> > cleanEx(); nameEx("arg.names")
137,138c136
< > cleanEx()
< > nameEx("breslow.dat")
---
> > cleanEx(); nameEx("breslow.dat")
154,155c152
< > cleanEx()
< > nameEx("ccov")
---
> > cleanEx(); nameEx("ccov")
185,186c182
< > cleanEx()
< > nameEx("coef.glmfm")
---
> > cleanEx(); nameEx("coef.glmfm")
209,210c205
< > cleanEx()
< > nameEx("coef.lmfm")
---
> > cleanEx(); nameEx("coef.lmfm")
231,232c226
< > cleanEx()
< > nameEx("covRob")
---
> > cleanEx(); nameEx("covRob")
262,263c256
< > cleanEx()
< > nameEx("covRob.control")
---
> > cleanEx(); nameEx("covRob.control")
283,284c276
< > cleanEx()
< > nameEx("covfmDistance2Plot")
---
> > cleanEx(); nameEx("covfmDistance2Plot")
303,304c295
< > cleanEx()
< > nameEx("covfmEllipsesPlot")
---
> > cleanEx(); nameEx("covfmEllipsesPlot")
323,324c314
< > cleanEx()
< > nameEx("covfmScreePlot")
---
> > cleanEx(); nameEx("covfmScreePlot")
343,344c333
< > cleanEx()
< > nameEx("covfmSqrtMDPlot")
---
> > cleanEx(); nameEx("covfmSqrtMDPlot")
363,364c352
< > cleanEx()
< > nameEx("drop1.lmRob")
---
> > cleanEx(); nameEx("drop1.lmRob")
395,396c383
< > cleanEx()
< > nameEx("fit.models")
---
> > cleanEx(); nameEx("fit.models")
419,420c406
< > cleanEx()
< > nameEx("get.fit.models.database")
---
> > cleanEx(); nameEx("get.fit.models.database")
514,515c500
< > cleanEx()
< > nameEx("glmRob")
---
> > cleanEx(); nameEx("glmRob")
546,547c531
< > cleanEx()
< > nameEx("glmRob.mallows")
---
> > cleanEx(); nameEx("glmRob.mallows")
575,576c559
< > cleanEx()
< > nameEx("glmRob.misclass")
---
> > cleanEx(); nameEx("glmRob.misclass")
606,607c589
< > cleanEx()
< > nameEx("leuk.dat")
---
> > cleanEx(); nameEx("leuk.dat")
623,624c605
< > cleanEx()
< > nameEx("lmRob")
---
> > cleanEx(); nameEx("lmRob")
641,642c622
< > cleanEx()
< > nameEx("lmRob.RFPE")
---
> > cleanEx(); nameEx("lmRob.RFPE")
661,662c641
< > cleanEx()
< > nameEx("lmRob.control")
---
> > cleanEx(); nameEx("lmRob.control")
680,681c659
< > cleanEx()
< > nameEx("mallows.dat")
---
> > cleanEx(); nameEx("mallows.dat")
697,698c675
< > cleanEx()
< > nameEx("methods.glmRob")
---
> > cleanEx(); nameEx("methods.glmRob")
877,878c854
< > cleanEx()
< > nameEx("methods.lmRob")
---
> > cleanEx(); nameEx("methods.lmRob")
965,966c941
< > cleanEx()
< > nameEx("plot.covfm")
---
> > cleanEx(); nameEx("plot.covfm")
990,991c965
< > cleanEx()
< > nameEx("plot.lmRob")
---
> > cleanEx(); nameEx("plot.lmRob")
1009,1010c983
< > cleanEx()
< > nameEx("plot.lmfm")
---
> > cleanEx(); nameEx("plot.lmfm")
1028,1029c1001
< > cleanEx()
< > nameEx("predict.glmRob")
---
> > cleanEx(); nameEx("predict.glmRob")
1063,1064c1035
< > cleanEx()
< > nameEx("predict.lmRob")
---
> > cleanEx(); nameEx("predict.lmRob")
1103,1104c1074
< > cleanEx()
< > nameEx("print.covfm")
---
> > cleanEx(); nameEx("print.covfm")
1177,1178c1147
< > cleanEx()
< > nameEx("print.glmRob")
---
> > cleanEx(); nameEx("print.glmRob")
1221,1222c1190
< > cleanEx()
< > nameEx("print.glmfm")
---
> > cleanEx(); nameEx("print.glmfm")
1279,1280c1247
< > cleanEx()
< > nameEx("print.lmRob")
---
> > cleanEx(); nameEx("print.lmRob")
1317,1318c1284
< > cleanEx()
< > nameEx("print.lmfm")
---
> > cleanEx(); nameEx("print.lmfm")
1351,1352c1317
< > cleanEx()
< > nameEx("print.summary.covfm")
---
> > cleanEx(); nameEx("print.summary.covfm")
1455,1456c1420
< > cleanEx()
< > nameEx("print.summary.glmRob")
---
> > cleanEx(); nameEx("print.summary.glmRob")
1534,1535c1498
< > cleanEx()
< > nameEx("print.summary.glmfm")
---
> > cleanEx(); nameEx("print.summary.glmfm")
1613,1614c1576
< > cleanEx()
< > nameEx("print.summary.lmRob")
---
> > cleanEx(); nameEx("print.summary.lmRob")
1653,1654c1615
< > cleanEx()
< > nameEx("print.summary.lmfm")
---
> > cleanEx(); nameEx("print.summary.lmfm")
1742,1743c1703
< > cleanEx()
< > nameEx("stack.dat")
---
> > cleanEx(); nameEx("stack.dat")
1782,1783c1742
< > cleanEx()
< > nameEx("step.lmRob")
---
> > cleanEx(); nameEx("step.lmRob")
1854d1812
< > 
1884,1885c1842
< > cleanEx()
< > nameEx("summary.covfm")
---
> > cleanEx(); nameEx("summary.covfm")
1910,1911c1867
< > cleanEx()
< > nameEx("summary.glmRob")
---
> > cleanEx(); nameEx("summary.glmRob")
1959,1960c1915
< > cleanEx()
< > nameEx("summary.glmfm")
---
> > cleanEx(); nameEx("summary.glmfm")
2009,2010c1964
< > cleanEx()
< > nameEx("summary.lmRob")
---
> > cleanEx(); nameEx("summary.lmRob")
2078,2079c2032
< > cleanEx()
< > nameEx("summary.lmfm")
---
> > cleanEx(); nameEx("summary.lmfm")
2132,2133c2085
< > cleanEx()
< > nameEx("weight.funs")
---
> > cleanEx(); nameEx("weight.funs")
2161,2162c2113
< > cleanEx()
< > nameEx("woodmod.dat")
---
> > cleanEx(); nameEx("woodmod.dat")
 OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
** running tests for arch 'x64' OK
* checking PDF version of manual ... OK