* using log directory 'd:/Rcompile/CRANpkg/local/2.12/multcomp.Rcheck' * using R version 2.12.2 (2011-02-25) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'multcomp/DESCRIPTION' ... OK * this is package 'multcomp' version '1.2-8' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'multcomp' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking differences from 'multcomp-Ex.Rout' to 'multcomp-Ex.Rout.save' ... 275,276c275,276 < trt2 - trt1 1.551055 1.184063 Inf < trt3 - trt1 1.396362 1.068776 Inf --- > trt2 - trt1 1.551157 1.184130 Inf > trt3 - trt1 1.396387 1.068788 Inf 282c282 < detaching 'package:coxme', 'package:nlme', 'package:bdsmatrix' --- > detaching 'package:coxme', 'package:bdsmatrix' 435c435 < Quantile = 3.0638 --- > Quantile = 3.0631 441,450c441,450 < B - A == 0 -2.1333 -4.7925 0.5259 < C - A == 0 3.6000 0.9408 6.2592 < D - A == 0 2.2000 -0.4592 4.8592 < E - A == 0 -4.3333 -6.9925 -1.6741 < C - B == 0 5.7333 3.0741 8.3925 < D - B == 0 4.3333 1.6741 6.9925 < E - B == 0 -2.2000 -4.8592 0.4592 < D - C == 0 -1.4000 -4.0592 1.2592 < E - C == 0 -7.9333 -10.5925 -5.2741 < E - D == 0 -6.5333 -9.1925 -3.8741 --- > B - A == 0 -2.1333 -4.7920 0.5253 > C - A == 0 3.6000 0.9414 6.2586 > D - A == 0 2.2000 -0.4586 4.8586 > E - A == 0 -4.3333 -6.9920 -1.6747 > C - B == 0 5.7333 3.0747 8.3920 > D - B == 0 4.3333 1.6747 6.9920 > E - B == 0 -2.2000 -4.8586 0.4586 > D - C == 0 -1.4000 -4.0586 1.2586 > E - C == 0 -7.9333 -10.5920 -5.2747 > E - D == 0 -6.5333 -9.1920 -3.8747 516c516 < C - A == 0 3.6000 0.8679 4.148 0.00275 ** --- > C - A == 0 3.6000 0.8679 4.148 0.00266 ** 562,568d561 < Attaching package: 'zoo' < < The following object(s) are masked from 'package:base': < < as.Date, as.Date.numeric < < 576c569 < Quantile = 2.8942 --- > Quantile = 2.8941 582c575 < PE4 - PE3 == 0 -0.012820 -0.114108 0.088468 --- > PE4 - PE3 == 0 -0.012820 -0.114107 0.088468 584,589c577,582 < PE6 - PE3 == 0 0.019286 -0.084210 0.122781 < PE7 - PE3 == 0 -0.010048 -0.120043 0.099948 < PE9 - PE3 == 0 0.075536 -0.028027 0.179098 < PE5 - PE4 == 0 -0.071579 -0.128779 -0.014379 < PE6 - PE4 == 0 0.032105 -0.034133 0.098344 < PE7 - PE4 == 0 0.002772 -0.073223 0.078767 --- > PE6 - PE3 == 0 0.019286 -0.084209 0.122780 > PE7 - PE3 == 0 -0.010048 -0.120042 0.099947 > PE9 - PE3 == 0 0.075536 -0.028026 0.179098 > PE5 - PE4 == 0 -0.071579 -0.128778 -0.014380 > PE6 - PE4 == 0 0.032105 -0.034133 0.098343 > PE7 - PE4 == 0 0.002772 -0.073222 0.078766 591,592c584,585 < PE6 - PE5 == 0 0.103684 0.042661 0.164707 < PE7 - PE5 == 0 0.074351 0.002856 0.145845 --- > PE6 - PE5 == 0 0.103684 0.042662 0.164707 > PE7 - PE5 == 0 0.074351 0.002857 0.145845 596c589 < PE9 - PE7 == 0 0.085583 0.006582 0.164584 --- > PE9 - PE7 == 0 0.085583 0.006583 0.164584 971c964 < Quantile = 2.4159 --- > Quantile = 2.416 977,979c970,972 < M - L == 0 -10.0000 -19.3552 -0.6448 < H - L == 0 -14.7222 -24.0774 -5.3670 < H - M == 0 -4.7222 -14.0774 4.6330 --- > M - L == 0 -10.0000 -19.3557 -0.6443 > H - L == 0 -14.7222 -24.0779 -5.3665 > H - M == 0 -4.7222 -14.0779 4.6335 1008,1010c1001,1003 < M - L == 0 -10.000 3.872 -2.582 0.03370 * < H - L == 0 -14.722 3.872 -3.802 0.00115 ** < H - M == 0 -4.722 3.872 -1.219 0.44743 --- > M - L == 0 -10.000 3.872 -2.582 0.03365 * > H - L == 0 -14.722 3.872 -3.802 0.00111 ** > H - M == 0 -4.722 3.872 -1.219 0.44745 1116c1109 < Quantile = 1.8433 --- > Quantile = 1.843 1122,1124c1115,1117 < V2 - V1 >= 0 -2.13330 -Inf 0.82288 < V3 - V1 >= 0 -7.46670 -Inf -4.51052 < V4 - V1 >= 0 -1.66670 -Inf -0.03584 --- > V2 - V1 >= 0 -2.13330 -Inf 0.82253 > V3 - V1 >= 0 -7.46670 -Inf -4.51087 > V4 - V1 >= 0 -1.66670 -Inf -0.03604 1285c1278 < Quantile = 1.8433 --- > Quantile = 1.843 1291,1293c1284,1286 < b1 - b0 >= 0 -2.13333 -Inf 0.82285 < b2 - b0 >= 0 -7.46667 -Inf -4.51048 < b3 - b0 >= 0 -1.66667 -Inf -0.03581 --- > b1 - b0 >= 0 -2.1333 -Inf 0.8225 > b2 - b0 >= 0 -7.4667 -Inf -4.5108 > b3 - b0 >= 0 -1.6667 -Inf -0.0360 1309c1302 < Quantile = 1.8429 --- > Quantile = 1.8432 1315,1317c1308,1310 < b1 - b0 >= 0 -2.13333 -Inf 0.82222 < b2 - b0 >= 0 -7.46667 -Inf -4.51112 < b3 - b0 >= 0 -1.66667 -Inf -0.03616 --- > b1 - b0 >= 0 -2.13333 -Inf 0.82281 > b2 - b0 >= 0 -7.46667 -Inf -4.51052 > b3 - b0 >= 0 -1.66667 -Inf -0.03583 1439c1432 < Quantile = 2.5984 --- > Quantile = 2.5986 1445,1447c1438,1440 < low - high == 0 -2.0150 -3.2745 -0.7555 < medium - high == 0 -2.2560 -3.5155 -0.9965 < medium - low == 0 -0.2410 -1.5005 1.0185 --- > low - high == 0 -2.0150 -3.2746 -0.7554 > medium - high == 0 -2.2560 -3.5156 -0.9964 > medium - low == 0 -0.2410 -1.5006 1.0186 OK * checking for unstated dependencies in tests ... OK * checking tests ... OK * checking package vignettes in 'inst/doc' ... OK * checking PDF version of manual ... OK