* using log directory 'd:/Rcompile/CRANpkg/local/2.12/haplo.stats.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'haplo.stats/DESCRIPTION' ... OK
* this is package 'haplo.stats' version '1.4.4'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'haplo.stats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
glm.fit.nowarn: no visible binding for global variable 'n'
haplo.glm: no visible binding for global variable 'eta'
haplo.glm: no visible binding for global variable 'response'
haplo.glm: no visible global function definition for 'as.family'
* checking Rd files ... NOTE
prepare_Rd: Ginv.Rd:107: Dropping empty section \keyword
prepare_Rd: Ginv.Rd:76-78: Dropping empty section 'Side Effects'
prepare_Rd: chisq.power.Rd:61: Dropping empty section \keyword
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prepare_Rd: find.haplo.beta.qt.Rd:69: Dropping empty section \keyword
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prepare_Rd: haplo.em.control.Rd:139: Dropping empty section \keyword
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prepare_Rd: haplo.em.control.Rd:127-129: Dropping empty section 'References'
prepare_Rd: haplo.em.fitter.Rd:96: Dropping empty section \keyword
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prepare_Rd: haplo.em.fitter.Rd:81-83: Dropping empty section 'Side Effects'
prepare_Rd: haplo.em.fitter.Rd:87-89: Dropping empty section 'References'
prepare_Rd: haplo.em.fitter.Rd:90-92: Dropping empty section \seealso
prepare_Rd: haplo.em.fitter.Rd:93-95: Dropping empty section \examples
prepare_Rd: haplo.glm.Rd:395: Dropping empty section \keyword
prepare_Rd: haplo.glm.control.Rd:114: Dropping empty section \keyword
prepare_Rd: haplo.group.Rd:141: Dropping empty section \keyword
prepare_Rd: haplo.group.Rd:109-111: Dropping empty section 'Side Effects'
prepare_Rd: haplo.hash.Rd:62: Dropping empty section \keyword
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prepare_Rd: haplo.hash.Rd:59-61: Dropping empty section \examples
prepare_Rd: haplo.score.Rd:292: Dropping empty section \keyword
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prepare_Rd: haplo.score.merge.Rd:87: Dropping empty section \keyword
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prepare_Rd: haplo.score.slide.Rd:181-183: Dropping empty section 'Side Effects'
prepare_Rd: hla.demo.Rd:51-53: Dropping empty section \details
prepare_Rd: locator.haplo.Rd:74: Dropping empty section \keyword
prepare_Rd: loci.Rd:124: Dropping empty section \keyword
prepare_Rd: loci.Rd:94-96: Dropping empty section \details
prepare_Rd: loci.Rd:91-93: Dropping empty section 'Side Effects'
prepare_Rd: loci.Rd:97-99: Dropping empty section 'References'
prepare_Rd: locus.Rd:86-88: Dropping empty section \details
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prepare_Rd: locus.Rd:89-91: Dropping empty section 'References'
prepare_Rd: locus.Rd:92-94: Dropping empty section \seealso
prepare_Rd: na.geno.keep.Rd:45: Dropping empty section \keyword
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prepare_Rd: plot.haplo.score.Rd:87: Dropping empty section \keyword
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prepare_Rd: plot.haplo.score.slide.Rd:96-98: Dropping empty section 'Side Effects'
prepare_Rd: plot.seqhap.Rd:114: Dropping empty section \keyword
prepare_Rd: plot.seqhap.Rd:84-86: Dropping empty section 'Side Effects'
prepare_Rd: print.haplo.cc.Rd:77: Dropping empty section \keyword
prepare_Rd: print.haplo.cc.Rd:66-68: Dropping empty section \details
prepare_Rd: print.haplo.cc.Rd:63-65: Dropping empty section 'Side Effects'
prepare_Rd: print.haplo.em.Rd:66: Dropping empty section \keyword
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prepare_Rd: print.haplo.em.Rd:63-65: Dropping empty section \examples
prepare_Rd: print.haplo.glm.Rd:70: Dropping empty section \keyword
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prepare_Rd: print.haplo.score.Rd:74: Dropping empty section \keyword
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prepare_Rd: score.sim.control.Rd:110: Dropping empty section \keyword
prepare_Rd: score.sim.control.Rd:84-86: Dropping empty section 'Side Effects'
prepare_Rd: seqhap.Rd:207: Dropping empty section \keyword
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prepare_Rd: setupData.Rd:48: Dropping empty section \keyword
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prepare_Rd: setupGeno.Rd:84: Dropping empty section \keyword
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prepare_Rd: summary.haplo.em.Rd:66: Dropping empty section \keyword
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prepare_Rd: x.sexcheck.Rd:62: Dropping empty section \keyword
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* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK