* using log directory 'd:/Rcompile/CRANpkg/local/2.12/cyphid.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'cyphid/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cyphid' version '1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cyphid' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: add.col.Rd:25-27: Dropping empty section \details
prepare_Rd: add.col.Rd:28-34: Dropping empty section \value
prepare_Rd: add.col.Rd:41-43: Dropping empty section \note
prepare_Rd: add.col.Rd:38-40: Dropping empty section \author
prepare_Rd: add.col.Rd:35-37: Dropping empty section \references
prepare_Rd: add.col.Rd:47-49: Dropping empty section \seealso
prepare_Rd: create.transition.location.matrix.Rd:22-24: Dropping empty section \details
prepare_Rd: create.transition.location.matrix.Rd:25-31: Dropping empty section \value
prepare_Rd: create.transition.location.matrix.Rd:38-40: Dropping empty section \note
prepare_Rd: create.transition.location.matrix.Rd:35-37: Dropping empty section \author
prepare_Rd: create.transition.location.matrix.Rd:32-34: Dropping empty section \references
prepare_Rd: create.transition.location.matrix.Rd:44-46: Dropping empty section \seealso
prepare_Rd: cyphid-package.Rd:27-29: Dropping empty section \references
prepare_Rd: cyphid-package.Rd:32-34: Dropping empty section \seealso
prepare_Rd: do.transitions.exist.Rd:19-21: Dropping empty section \details
prepare_Rd: do.transitions.exist.Rd:22-28: Dropping empty section \value
prepare_Rd: do.transitions.exist.Rd:35-37: Dropping empty section \note
prepare_Rd: do.transitions.exist.Rd:32-34: Dropping empty section \author
prepare_Rd: do.transitions.exist.Rd:29-31: Dropping empty section \references
prepare_Rd: do.transitions.exist.Rd:41-43: Dropping empty section \seealso
prepare_Rd: get.all.breaks.Rd:25-27: Dropping empty section \details
prepare_Rd: get.all.breaks.Rd:47-49: Dropping empty section \note
prepare_Rd: get.all.breaks.Rd:44-46: Dropping empty section \author
prepare_Rd: get.all.breaks.Rd:41-43: Dropping empty section \references
prepare_Rd: get.all.breaks.Rd:53-55: Dropping empty section \seealso
prepare_Rd: get.breaks.vector.Rd:19-21: Dropping empty section \details
prepare_Rd: get.breaks.vector.Rd:22-28: Dropping empty section \value
prepare_Rd: get.breaks.vector.Rd:35-37: Dropping empty section \note
prepare_Rd: get.breaks.vector.Rd:32-34: Dropping empty section \author
prepare_Rd: get.breaks.vector.Rd:29-31: Dropping empty section \references
prepare_Rd: get.breaks.vector.Rd:41-43: Dropping empty section \seealso
prepare_Rd: get.cycle.breaks.Rd:25-27: Dropping empty section \details
prepare_Rd: get.cycle.breaks.Rd:28-34: Dropping empty section \value
prepare_Rd: get.cycle.breaks.Rd:41-43: Dropping empty section \note
prepare_Rd: get.cycle.breaks.Rd:38-40: Dropping empty section \author
prepare_Rd: get.cycle.breaks.Rd:35-37: Dropping empty section \references
prepare_Rd: get.cycle.breaks.Rd:47-49: Dropping empty section \seealso
prepare_Rd: get.cycle.counts.Rd:19-21: Dropping empty section \details
prepare_Rd: get.cycle.counts.Rd:22-28: Dropping empty section \value
prepare_Rd: get.cycle.counts.Rd:35-37: Dropping empty section \note
prepare_Rd: get.cycle.counts.Rd:32-34: Dropping empty section \author
prepare_Rd: get.cycle.counts.Rd:29-31: Dropping empty section \references
prepare_Rd: get.cycle.counts.Rd:41-43: Dropping empty section \seealso
prepare_Rd: get.cycle.durations.Rd:19-21: Dropping empty section \details
prepare_Rd: get.cycle.durations.Rd:22-28: Dropping empty section \value
prepare_Rd: get.cycle.durations.Rd:35-37: Dropping empty section \note
prepare_Rd: get.cycle.durations.Rd:32-34: Dropping empty section \author
prepare_Rd: get.cycle.durations.Rd:29-31: Dropping empty section \references
prepare_Rd: get.cycle.durations.Rd:41-43: Dropping empty section \seealso
prepare_Rd: get.cycle.matrix.Rd:25-27: Dropping empty section \details
prepare_Rd: get.cycle.matrix.Rd:28-34: Dropping empty section \value
prepare_Rd: get.cycle.matrix.Rd:41-43: Dropping empty section \note
prepare_Rd: get.cycle.matrix.Rd:38-40: Dropping empty section \author
prepare_Rd: get.cycle.matrix.Rd:35-37: Dropping empty section \references
prepare_Rd: get.cycle.matrix.Rd:47-49: Dropping empty section \seealso
prepare_Rd: get.cycle.minimums.Rd:28-30: Dropping empty section \details
prepare_Rd: get.cycle.minimums.Rd:31-37: Dropping empty section \value
prepare_Rd: get.cycle.minimums.Rd:44-46: Dropping empty section \note
prepare_Rd: get.cycle.minimums.Rd:41-43: Dropping empty section \author
prepare_Rd: get.cycle.minimums.Rd:38-40: Dropping empty section \references
prepare_Rd: get.cycle.minimums.Rd:50-52: Dropping empty section \seealso
prepare_Rd: get.trans.Rd:19-21: Dropping empty section \details
prepare_Rd: get.trans.Rd:22-28: Dropping empty section \value
prepare_Rd: get.trans.Rd:35-37: Dropping empty section \note
prepare_Rd: get.trans.Rd:32-34: Dropping empty section \author
prepare_Rd: get.trans.Rd:29-31: Dropping empty section \references
prepare_Rd: get.trans.Rd:41-43: Dropping empty section \seealso
prepare_Rd: get.transition.locations.Rd:34-36: Dropping empty section \details
prepare_Rd: get.transition.locations.Rd:37-43: Dropping empty section \value
prepare_Rd: get.transition.locations.Rd:50-52: Dropping empty section \note
prepare_Rd: get.transition.locations.Rd:47-49: Dropping empty section \author
prepare_Rd: get.transition.locations.Rd:44-46: Dropping empty section \references
prepare_Rd: get.transition.locations.Rd:56-58: Dropping empty section \seealso
prepare_Rd: get.window.Rd:19-21: Dropping empty section \details
prepare_Rd: get.window.Rd:22-28: Dropping empty section \value
prepare_Rd: get.window.Rd:35-37: Dropping empty section \note
prepare_Rd: get.window.Rd:32-34: Dropping empty section \author
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prepare_Rd: is.dividing.valid.Rd:19-21: Dropping empty section \details
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prepare_Rd: is.dividing.valid.Rd:35-37: Dropping empty section \note
prepare_Rd: is.dividing.valid.Rd:32-34: Dropping empty section \author
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prepare_Rd: is.dividing.valid.Rd:41-43: Dropping empty section \seealso
prepare_Rd: jaw.Rd:18-20: Dropping empty section \details
prepare_Rd: jaw.Rd:21-23: Dropping empty section \source
prepare_Rd: rm.end.NAs.Rd:19-21: Dropping empty section \details
prepare_Rd: rm.end.NAs.Rd:22-28: Dropping empty section \value
prepare_Rd: rm.end.NAs.Rd:35-37: Dropping empty section \note
prepare_Rd: rm.end.NAs.Rd:32-34: Dropping empty section \author
prepare_Rd: rm.end.NAs.Rd:29-31: Dropping empty section \references
prepare_Rd: rm.end.NAs.Rd:41-43: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK