* using log directory 'd:/Rcompile/CRANpkg/local/2.12/TAHMMAnnot.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'TAHMMAnnot/DESCRIPTION' ... OK
* this is package 'TAHMMAnnot' version '1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'TAHMMAnnot' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: Acces.Rd:15-17: Dropping empty section \details
prepare_Rd: Acces.Rd:21-23: Dropping empty section \references
prepare_Rd: Acces.Rd:25: Dropping empty section \seealso
prepare_Rd: BackwardAnnotR.Rd:19-21: Dropping empty section \details
prepare_Rd: BackwardAnnotR.Rd:26-28: Dropping empty section \references
prepare_Rd: BackwardAnnotrestart0R.Rd:20-22: Dropping empty section \details
prepare_Rd: BackwardAnnotrestart0R.Rd:27-29: Dropping empty section \references
prepare_Rd: BackwardR.Rd:16-18: Dropping empty section \details
prepare_Rd: BackwardR.Rd:23-25: Dropping empty section \references
prepare_Rd: Bidim_Gaussian_Mixture.Rd:66: Dropping empty section \keyword
prepare_Rd: Bidim_Gaussian_Mixture.Rd:67: Dropping empty section \keyword
prepare_Rd: Bidim_Gaussian_Mixture_allchr.Rd:61: Dropping empty section \keyword
prepare_Rd: Bidim_Gaussian_Mixture_allchr.Rd:62: Dropping empty section \keyword
prepare_Rd: CalculDirect.Rd:13-15: Dropping empty section \details
prepare_Rd: CalculDirect.Rd:19-21: Dropping empty section \references
prepare_Rd: ForwardAnnotR.Rd:19-21: Dropping empty section \details
prepare_Rd: ForwardAnnotR.Rd:25-27: Dropping empty section \references
prepare_Rd: ForwardAnnotrestart0R.Rd:20-22: Dropping empty section \details
prepare_Rd: ForwardAnnotrestart0R.Rd:26-28: Dropping empty section \references
prepare_Rd: ForwardR.Rd:17-19: Dropping empty section \details
prepare_Rd: ForwardR.Rd:23-25: Dropping empty section \references
prepare_Rd: HMM.Rd:68: Dropping empty section \keyword
prepare_Rd: HMM.Rd:69: Dropping empty section \keyword
prepare_Rd: HMM_Annot.Rd:71: Dropping empty section \keyword
prepare_Rd: HMM_Annot_allchr.Rd:64: Dropping empty section \keyword
prepare_Rd: HMM_Annot_allchr.Rd:65: Dropping empty section \keyword
prepare_Rd: HMM_Annot_restart0.Rd:73: Dropping empty section \keyword
prepare_Rd: HMM_Annot_restart0_allchr.Rd:64: Dropping empty section \keyword
prepare_Rd: HMM_Annot_restart0_allchr.Rd:65: Dropping empty section \keyword
prepare_Rd: HMM_allchr.Rd:64: Dropping empty section \keyword
prepare_Rd: HMM_allchr.Rd:65: Dropping empty section \keyword
prepare_Rd: Initialization.Rd:15-17: Dropping empty section \details
prepare_Rd: Initialization.Rd:21-23: Dropping empty section \references
prepare_Rd: Initialization.Rd:25: Dropping empty section \seealso
prepare_Rd: Mixture_Annot.Rd:70: Dropping empty section \keyword
prepare_Rd: Mixture_Annot_allchr.Rd:65: Dropping empty section \keyword
prepare_Rd: Mixture_Annot_allchr.Rd:66: Dropping empty section \keyword
prepare_Rd: Normalisation_ANOVA.Rd:31: Dropping empty section \keyword
prepare_Rd: Normalisation_ANOVA.Rd:32: Dropping empty section \keyword
prepare_Rd: Normalisation_ANOVA.Rd:25-27: Dropping empty section \references
prepare_Rd: Normalisation_ANOVA.Rd:29: Dropping empty section \seealso
prepare_Rd: Process_norm.Rd:51: Dropping empty section \keyword
prepare_Rd: Process_norm.Rd:52: Dropping empty section \keyword
prepare_Rd: Process_norm.Rd:45-47: Dropping empty section \references
prepare_Rd: ProdMat.Rd:15-17: Dropping empty section \details
prepare_Rd: ProdMat.Rd:21-23: Dropping empty section \references
prepare_Rd: ProdMat.Rd:25: Dropping empty section \seealso
prepare_Rd: ProdMat2.Rd:14-16: Dropping empty section \details
prepare_Rd: ProdMat2.Rd:20-22: Dropping empty section \references
prepare_Rd: ProdMat2.Rd:24: Dropping empty section \seealso
prepare_Rd: ProdMatGauss.Rd:14-16: Dropping empty section \details
prepare_Rd: ProdMatGauss.Rd:20-22: Dropping empty section \references
prepare_Rd: ProdMatGauss.Rd:24: Dropping empty section \seealso
prepare_Rd: Sort_file.Rd:21-23: Dropping empty section \references
prepare_Rd: Sort_file.Rd:25: Dropping empty section \seealso
prepare_Rd: Tau.Rd:16-18: Dropping empty section \details
prepare_Rd: Tau.Rd:22-24: Dropping empty section \references
prepare_Rd: Tauannot.Rd:16-18: Dropping empty section \details
prepare_Rd: Tauannot.Rd:22-24: Dropping empty section \references
prepare_Rd: matW.Rd:21-23: Dropping empty section \references
prepare_Rd: matW.Rd:25: Dropping empty section \seealso
prepare_Rd: normalisation_lowess.Rd:34: Dropping empty section \keyword
prepare_Rd: normalisation_lowess.Rd:35: Dropping empty section \keyword
prepare_Rd: normalisation_lowess.Rd:28-30: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK