* using log directory 'd:/Rcompile/CRANpkg/local/2.12/SweaveListingUtils.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'SweaveListingUtils/DESCRIPTION' ... OK
* this is package 'SweaveListingUtils' version '0.5.2'
* package encoding: latin1
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SweaveListingUtils' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking differences from 'SweaveListingUtils-Ex.Rout' to 'SweaveListingUtils-Ex.Rout.save' ...
2c2
< :startupmsg>  Utilities for start-up messages (version 0.7.2)
---
> :startupmsg>  Utilities for start-up messages (version 0.7.1)
8,9c8
< :SweaveListingUtils>  TeX listings package (version
< :SweaveListingUtils>  0.5.2)
---
> :SweaveListingUtils>  TeX listings package (version 0.5)
78c77,78
< ... nothing discovered so far ...> 
---
> ... nothing discovered so far ...
> > 
399c399
< \newcommand{\pkgversion}{{\tt 2.3.3}}
---
> \newcommand{\pkgversion}{{\tt 2.3}}
516,532c516,533
< morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,windowsFonts,%
< windowsFont,windows.options,windows,win.print,win.metafile,%
< win.graph,trans3d,topo.colors,tiff,terrain.colors,%
< setPS,setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,savePlot,%
< rgb2hsv,replayPlot,recordPlot,recordGraphics,ps.options,%
< postscriptFonts,postscriptFont,png,pdfFonts,pdf.options,%
< pdf,nclass.scott,nclass.Sturges,nclass.FD,n2mfrow,%
< msgWindow,make.rgb,jpeg,is.raster,heat.colors,%
< hcl,grey.colors,gray.colors,graphics.off,getGraphicsEventEnv,%
< getGraphicsEvent,extendrange,embedFonts,deviceIsInteractive,devAskNewPage,%
< dev.size,dev.set,dev.print,dev.prev,dev.off,%
< dev.next,dev.new,dev.list,dev.interactive,dev.cur,%
< dev.copy2pdf,dev.copy2eps,dev.copy,dev.control,densCols,%
< convertColor,contourLines,colorspaces,colorRampPalette,colorRamp,%
< colorConverter,col2rgb,cm.colors,check.options,bringToTop,%
< boxplot.stats,bmp,blues9,bitmap,as.raster,%
< as.graphicsAnnot,adjustcolor,Type1Font,Hershey,CIDFont%
---
> morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,trans3d,%
> topo.colors,tiff,terrain.colors,svg,setPS,%
> setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,savePlot,rgb2hsv,%
> replayPlot,recordPlot,recordGraphics,quartzFonts,quartzFont,%
> quartz.options,quartz,ps.options,postscriptFonts,postscriptFont,%
> png,pdfFonts,pdf.options,pdf,nclass.scott,%
> nclass.Sturges,nclass.FD,n2mfrow,make.rgb,jpeg,%
> is.raster,heat.colors,hcl,grey.colors,gray.colors,%
> graphics.off,getGraphicsEventEnv,getGraphicsEvent,extendrange,embedFonts,%
> deviceIsInteractive,devAskNewPage,dev.size,dev.set,dev.print,%
> dev.prev,dev.off,dev.next,dev.new,dev.list,%
> dev.interactive,dev.cur,dev.copy2pdf,dev.copy2eps,dev.copy,%
> dev.control,densCols,convertColor,contourLines,colorspaces,%
> colorRampPalette,colorRamp,colorConverter,col2rgb,cm.colors,%
> check.options,cairo_ps,cairo_pdf,boxplot.stats,bmp,%
> blues9,bitmap,as.raster,as.graphicsAnnot,adjustcolor,%
> X11Fonts,X11Font,X11.options,Type1Font,Hershey,%
> CIDFont%
539,558c540,555
< morekeywords={[7]zip.unpack,zip.file.extract,wsbrowser,writeClipboard,write.table,%
< write.socket,write.csv2,write.csv,winProgressBar,winMenuNames,%
< winMenuItems,winMenuDelItem,winMenuDel,winMenuAddItem,winMenuAdd,%
< winDialogString,winDialog,win.version,vignette,url.show,%
< upgrade,update.packages,update.packageStatus,unzip,untar,%
< unstack,type.convert,txtProgressBar,toLatex,toBibtex,%
< timestamp,tar,tail.matrix,tail,summaryRprof,%
< strOptions,str,stack,shortPathName,setWindowTitle,%
< setWinProgressBar,setTxtProgressBar,setStatusBar,setRepositories,setInternet2,%
< setBreakpoint,sessionInfo,select.list,savehistory,rtags,%
< remove.packages,relist,recover,readRegistry,readClipboard,%
< readCitationFile,read.table,read.socket,read.fwf,read.fortran,%
< read.delim2,read.delim,read.csv2,read.csv,read.DIF,%
< rc.status,rc.settings,rc.options,rc.getOption,promptPackage,%
< promptData,personList,person,packageVersion,packageStatus,%
< packageDescription,package.skeleton,package.contents,old.packages,object.size,%
< normalizePath,news,new.packages,modifyList,mirror2html,%
< memory.size,memory.limit,makeRweaveLatexCodeRunner,make.socket,make.packages.html,%
< maintainer,lsf.str,ls.str,localeToCharset,loadhistory,%
< loadRconsole,link.html.help,limitedLabels,is.relistable,installed.packages,%
---
> morekeywords={[7]zip.file.extract,wsbrowser,write.table,write.socket,write.csv2,%
> write.csv,vignette,url.show,upgrade,update.packages,%
> update.packageStatus,unzip,untar,unstack,type.convert,%
> txtProgressBar,toLatex,toBibtex,timestamp,tar,%
> tail.matrix,tail,summaryRprof,strOptions,str,%
> stack,setTxtProgressBar,setRepositories,setBreakpoint,sessionInfo,%
> select.list,savehistory,rtags,remove.packages,relist,%
> recover,readCitationFile,read.table,read.socket,read.fwf,%
> read.fortran,read.delim2,read.delim,read.csv2,read.csv,%
> read.DIF,rc.status,rc.settings,rc.options,rc.getOption,%
> promptPackage,promptData,personList,person,packageVersion,%
> packageStatus,packageDescription,package.skeleton,package.contents,old.packages,%
> object.size,nsl,normalizePath,news,new.packages,%
> modifyList,mirror2html,memory.size,memory.limit,makeRweaveLatexCodeRunner,%
> make.socket,make.packages.html,maintainer,lsf.str,ls.str,%
> localeToCharset,loadhistory,limitedLabels,is.relistable,installed.packages,%
560,577c557,572
< head.matrix,head,glob2rx,getWindowsHandles,getWindowsHandle,%
< getWindowTitle,getWinProgressBar,getTxtProgressBar,getS3method,getIdentification,%
< getFromNamespace,getClipboardFormats,getCRANmirrors,getAnywhere,formatUL,%
< formatOL,flush.console,fixInNamespace,findLineNum,file_test,%
< file.edit,dump.frames,download.packages,download.file,de.setup,%
< de.restore,de.ncols,data.entry,count.fields,contrib.url,%
< compareVersion,combn,close.socket,citation,citHeader,%
< citFooter,citEntry,chooseCRANmirror,chooseBioCmirror,choose.files,%
< choose.dir,checkCRAN,capture.output,bug.report,browseVignettes,%
< browseURL,browseEnv,bibentry,available.packages,assignInNamespace,%
< aspell_write_personal_dictionary_file,aspell_package_vignettes,aspell_package_Rd_files,aspell,as.roman,%
< as.relistable,as.personList,as.person,arrangeWindows,argsAnywhere,%
< alarm,View,URLencode,URLdecode,SweaveSyntaxNoweb,%
< SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,Sweave,Stangle,%
< RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,%
< RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,%
< Rtangle,Rprofmem,Rprof,RSiteSearch,RShowDoc,%
< Filters,DLL.version,CRAN.packages%
---
> head.matrix,head,glob2rx,getTxtProgressBar,getS3method,%
> getFromNamespace,getCRANmirrors,getAnywhere,formatUL,formatOL,%
> flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
> dump.frames,download.packages,download.file,de.setup,de.restore,%
> de.ncols,data.entry,count.fields,contrib.url,compareVersion,%
> combn,close.socket,citation,citHeader,citFooter,%
> citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,capture.output,%
> bug.report,browseVignettes,browseURL,browseEnv,bibentry,%
> available.packages,assignInNamespace,aspell_write_personal_dictionary_file,aspell_package_vignettes,aspell_package_Rd_files,%
> aspell,as.roman,as.relistable,as.personList,as.person,%
> argsAnywhere,alarm,View,URLencode,URLdecode,%
> SweaveSyntaxNoweb,SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,Sweave,%
> Stangle,RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,%
> RweaveLatexFinish,RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,%
> RtangleSetup,Rtangle,Rprofmem,Rprof,RSiteSearch,%
> RShowDoc,CRAN.packages%
687,818c682,812
< signalCondition,showConnections,shell.exec,shell,shQuote,%
< setTimeLimit,setSessionTimeLimit,setNamespaceInfo,setHook,setCConverterStatus,%
< set.seed,serialize,seq_len,seq_along,seq.int,%
< seq.default,seq.POSIXt,seq.Date,seek.connection,seek,%
< scan.url,scale.default,save.image,sample.int,sQuote,%
< rowsum.default,rowsum.data.frame,rownames<-,rowSums,rowMeans,%
< row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,row.names.data.frame,%
< row.names,round.POSIXt,round.Date,rev.default,retracemem,%
< restartFormals,restartDescription,replicate,rep.numeric_version,rep.int,%
< rep.factor,rep.POSIXlt,rep.POSIXct,rep.Date,removeTaskCallback,%
< removeCConverter,registerS3methods,registerS3method,reg.finalizer,readRenviron,%
< readLines,readChar,readBin,read.table.url,read.dcf,%
< rcond,rbind.data.frame,rawToChar,rawToBits,rawShift,%
< rawConnectionValue,rawConnection,raw,rapply,range.default,%
< quarters.POSIXt,quarters.Date,quarters,qr.solve,qr.resid,%
< qr.qy,qr.qty,qr.fitted,qr.default,qr.coef,%
< qr.X,qr.R,qr.Q,pushBackLength,pushBack,%
< psigamma,prop.table,proc.time,printNoClass,print.warnings,%
< print.table,print.summaryDefault,print.summary.table,print.srcref,print.srcfile,%
< print.simple.list,print.rle,print.restart,print.proc_time,print.packageInfo,%
< print.octmode,print.numeric_version,print.noquote,print.listof,print.libraryIQR,%
< print.hexmode,print.function,print.factor,print.difftime,print.default,%
< print.data.frame,print.connection,print.condition,print.by,print.POSIXlt,%
< print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,print.DLLInfoList,%
< print.DLLInfo,print.AsIs,prettyNum,pretty.default,pos.to.env,%
< pmin.int,pmax.int,pipe,pi,path.expand,%
< parseNamespaceFile,parse.dcf,parent.frame,parent.env<-,parent.env,%
< package_version,packageStartupMessage,packageHasNamespace,packageEvent,package.description,%
< packBits,open.srcfilecopy,open.srcfile,open.connection,open,%
< on.exit,oldClass<-,oldClass,nzchar,numeric_version,%
< norm,ngettext,new.env,namespaceImportMethods,namespaceImportFrom,%
< namespaceImportClasses,namespaceImport,namespaceExport,names<-,mostattributes<-,%
< months.POSIXt,months.Date,months,month.name,month.abb,%
< mode<-,mget,message,merge.default,merge.data.frame,%
< memory.profile,memDecompress,memCompress,mem.limits,mean.difftime,%
< mean.default,mean.data.frame,mean.POSIXlt,mean.POSIXct,mean.Date,%
< max.col,match.fun,match.call,match.arg,mat.or.vec,%
< margin.table,mapply,manglePackageName,makeActiveBinding,make.unique,%
< make.names,lower.tri,logb,lockEnvironment,lockBinding,%
< loadingNamespaceInfo,loadedNamespaces,loadURL,loadNamespace,list2env,%
< list.files,library.dynam.unload,library.dynam,lfactorial,levels<-.factor,%
< levels<-,levels.default,letters,length<-.factor,length<-,%
< length.POSIXlt,lazyLoadDBfetch,lazyLoad,labels.default,l10n_info,%
< kappa.tri,kappa.qr,kappa.lm,kappa.default,julian.POSIXt,%
< julian.Date,julian,isdebugged,isatty,isTRUE,%
< isSymmetric.matrix,isSymmetric,isSeekable,isS4,isRestart,%
< isOpen,isNamespace,isIncomplete,isBaseNamespace,is.vector,%
< is.unsorted,is.table,is.symbol,is.single,is.recursive,%
< is.real,is.raw,is.qr,is.primitive,is.pairlist,%
< is.package_version,is.ordered,is.object,is.numeric_version,is.numeric.difftime,%
< is.numeric.POSIXt,is.numeric.Date,is.numeric,is.null,is.nan,%
< is.name,is.na<-.factor,is.na<-.default,is.na<-,is.na.numeric_version,%
< is.na.data.frame,is.na.POSIXlt,is.na,is.matrix,is.logical,%
< is.loaded,is.list,is.language,is.integer,is.infinite,%
< is.function,is.finite,is.factor,is.expression,is.environment,%
< is.element,is.double,is.data.frame,is.complex,is.character,%
< is.call,is.atomic,is.array,is.R,invokeRestartInteractively,%
< invokeRestart,inverse.rle,intToUtf8,intToBits,importIntoEnv,%
< identity,identical,icuSetCollate,iconvlist,iconv,%
< gzfile,gzcon,grepl,gregexpr,gettextf,%
< gettext,getTaskCallbackNames,getSrcLines,getRversion,getNumCConverters,%
< getNativeSymbolInfo,getNamespaceVersion,getNamespaceUsers,getNamespaceName,getNamespaceInfo,%
< getNamespaceImports,getNamespaceExports,getNamespace,getLoadedDLLs,getHook,%
< getExportedValue,getDLLRegisteredRoutines.character,getDLLRegisteredRoutines.DLLInfo,getDLLRegisteredRoutines,getConnection,%
< getCallingDLLe,getCallingDLL,getCConverterStatus,getCConverterDescriptions,getAllConnections,%
< gc.time,formatDL,format.pval,format.octmode,format.numeric_version,%
< format.info,format.hexmode,format.factor,format.difftime,format.default,%
< format.data.frame,format.char,format.POSIXlt,format.POSIXct,format.Date,%
< format.AsIs,formals<-,force,flush.connection,flush,%
< findRestart,findPackageEnv,findInterval,file.symlink,file.show,%
< file.rename,file.remove,file.path,file.info,file.exists,%
< file.create,file.copy,file.choose,file.append,file.access,%
< fifo,factorial,expm1,expand.grid,eval.parent,%
< environmentName,environmentIsLocked,environment<-,env.profile,enquote,%
< encodeString,enc2utf8,enc2native,emptyenv,eapply,%
< dyn.unload,dyn.load,duplicated.numeric_version,duplicated.matrix,duplicated.default,%
< duplicated.data.frame,duplicated.array,duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,%
< droplevels,do.call,dir.create,dimnames<-.data.frame,dimnames<-,%
< dimnames.data.frame,dim<-,dim.data.frame,difftime,diff.default,%
< diff.POSIXt,diff.Date,diag<-,determinant.matrix,determinant,%
< det,delayedAssign,default.stringsAsFactors,debugonce,data.matrix,%
< data.frame,data.class,dQuote,cut.default,cut.POSIXt,%
< cut.Date,contributors,conditionMessage.condition,conditionMessage,conditionCall.condition,%
< conditionCall,computeRestarts,comment<-,colnames<-,colSums,%
< colMeans,codes<-,codes.ordered,codes.factor,closeAllConnections,%
< close.srcfile,close.connection,class<-,chol.default,check_tzones,%
< chartr,charToRaw,char.expand,cbind.data.frame,casefold,%
< capabilities,callCC,c.numeric_version,c.noquote,c.POSIXlt,%
< c.POSIXct,c.Date,bzfile,by.default,by.data.frame,%
< browserText,browserSetDebug,browserCondition,bquote,body<-,%
< bindtextdomain,bindingIsLocked,bindingIsActive,baseenv,attributes<-,%
< attr<-,attr.all.equal,attachNamespace,assign,asS4,%
< asS3,asNamespace,as.vector.factor,as.vector,as.table.default,%
< as.table,as.symbol,as.single.default,as.single,as.real,%
< as.raw,as.qr,as.pairlist,as.package_version,as.ordered,%
< as.octmode,as.numeric_version,as.numeric,as.null.default,as.null,%
< as.name,as.matrix.noquote,as.matrix.default,as.matrix.data.frame,as.matrix.POSIXlt,%
< as.matrix,as.logical.factor,as.logical,as.list.numeric_version,as.list.function,%
< as.list.factor,as.list.environment,as.list.default,as.list.data.frame,as.list.POSIXct,%
< as.list.Date,as.list,as.integer,as.hexmode,as.function.default,%
< as.function,as.factor,as.expression.default,as.expression,as.environment,%
< as.double.difftime,as.double.POSIXlt,as.double,as.difftime,as.data.frame.vector,%
< as.data.frame.ts,as.data.frame.table,as.data.frame.raw,as.data.frame.ordered,as.data.frame.numeric_version,%
< as.data.frame.numeric,as.data.frame.model.matrix,as.data.frame.matrix,as.data.frame.logical,as.data.frame.list,%
< as.data.frame.integer,as.data.frame.factor,as.data.frame.difftime,as.data.frame.default,as.data.frame.data.frame,%
< as.data.frame.complex,as.data.frame.character,as.data.frame.array,as.data.frame.POSIXlt,as.data.frame.POSIXct,%
< as.data.frame.Date,as.data.frame.AsIs,as.data.frame,as.complex,as.character.srcref,%
< as.character.octmode,as.character.numeric_version,as.character.hexmode,as.character.factor,as.character.error,%
< as.character.default,as.character.condition,as.character.POSIXt,as.character.Date,as.character,%
< as.call,as.array.default,as.array,as.POSIXlt.numeric,as.POSIXlt.factor,%
< as.POSIXlt.default,as.POSIXlt.dates,as.POSIXlt.date,as.POSIXlt.character,as.POSIXlt.POSIXct,%
< as.POSIXlt.Date,as.POSIXlt,as.POSIXct.numeric,as.POSIXct.default,as.POSIXct.dates,%
< as.POSIXct.date,as.POSIXct.POSIXlt,as.POSIXct.Date,as.POSIXct,as.Date.numeric,%
< as.Date.factor,as.Date.default,as.Date.dates,as.Date.date,as.Date.character,%
< as.Date.POSIXlt,as.Date.POSIXct,as.Date,arrayInd,anyDuplicated.matrix,%
< anyDuplicated.default,anyDuplicated.data.frame,anyDuplicated.array,anyDuplicated,all.vars,%
< all.names,all.equal.raw,all.equal.numeric,all.equal.list,all.equal.language,%
< all.equal.formula,all.equal.factor,all.equal.default,all.equal.character,all.equal.POSIXct,%
< all.equal,agrep,addTaskCallback,addNA,Vectorize,%
< T,Sys.which,Sys.unsetenv,Sys.umask,Sys.timezone,%
< Sys.time,Sys.sleep,Sys.setlocale,Sys.setenv,Sys.readlink,%
< Sys.putenv,Sys.localeconv,Sys.info,Sys.glob,Sys.getpid,%
< Sys.getlocale,Sys.getenv,Sys.chmod,Sys.Date,Summary.numeric_version,%
< Summary.factor,Summary.difftime,Summary.data.frame,Summary.POSIXlt,Summary.POSIXct,%
< Summary.Date,Reduce,R_system_version,RNGversion,R.version.string,%
< R.version,R.home,R.Version,Position,Ops.ordered,%
< Ops.numeric_version,Ops.factor,Ops.difftime,Ops.data.frame,Ops.POSIXt,%
< Ops.Date,Negate,Math.factor,Math.difftime,Math.data.frame,%
< Math.POSIXt,Math.Date,Map,La.svd,La.eigen,%
< La.chol2inv,La.chol,LETTERS,ISOdatetime,ISOdate,%
< Find,Filter,F,Encoding<-,Encoding,%
< Cstack_info%
---
> signalCondition,showConnections,shQuote,setTimeLimit,setSessionTimeLimit,%
> setNamespaceInfo,setHook,setCConverterStatus,set.seed,serialize,%
> seq_len,seq_along,seq.int,seq.default,seq.POSIXt,%
> seq.Date,seek.connection,seek,scan.url,scale.default,%
> save.image,sample.int,sQuote,rowsum.default,rowsum.data.frame,%
> rownames<-,rowSums,rowMeans,row.names<-.default,row.names<-.data.frame,%
> row.names<-,row.names.default,row.names.data.frame,row.names,round.POSIXt,%
> round.Date,rev.default,retracemem,restartFormals,restartDescription,%
> replicate,rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,%
> rep.POSIXct,rep.Date,removeTaskCallback,removeCConverter,registerS3methods,%
> registerS3method,reg.finalizer,readRenviron,readLines,readChar,%
> readBin,read.table.url,read.dcf,rcond,rbind.data.frame,%
> rawToChar,rawToBits,rawShift,rawConnectionValue,rawConnection,%
> raw,rapply,range.default,quarters.POSIXt,quarters.Date,%
> quarters,qr.solve,qr.resid,qr.qy,qr.qty,%
> qr.fitted,qr.default,qr.coef,qr.X,qr.R,%
> qr.Q,pushBackLength,pushBack,psigamma,prop.table,%
> proc.time,printNoClass,print.warnings,print.table,print.summaryDefault,%
> print.summary.table,print.srcref,print.srcfile,print.simple.list,print.rle,%
> print.restart,print.proc_time,print.packageInfo,print.octmode,print.numeric_version,%
> print.noquote,print.listof,print.libraryIQR,print.hexmode,print.function,%
> print.factor,print.difftime,print.default,print.data.frame,print.connection,%
> print.condition,print.by,print.POSIXlt,print.POSIXct,print.NativeRoutineList,%
> print.Date,print.DLLRegisteredRoutines,print.DLLInfoList,print.DLLInfo,print.AsIs,%
> prettyNum,pretty.default,pos.to.env,pmin.int,pmax.int,%
> pipe,pi,path.expand,parseNamespaceFile,parse.dcf,%
> parent.frame,parent.env<-,parent.env,package_version,packageStartupMessage,%
> packageHasNamespace,packageEvent,package.description,packBits,open.srcfilecopy,%
> open.srcfile,open.connection,open,on.exit,oldClass<-,%
> oldClass,nzchar,numeric_version,norm,ngettext,%
> new.env,namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,namespaceImport,%
> namespaceExport,names<-,mostattributes<-,months.POSIXt,months.Date,%
> months,month.name,month.abb,mode<-,mget,%
> message,merge.default,merge.data.frame,memory.profile,memDecompress,%
> memCompress,mem.limits,mean.difftime,mean.default,mean.data.frame,%
> mean.POSIXlt,mean.POSIXct,mean.Date,max.col,match.fun,%
> match.call,match.arg,mat.or.vec,margin.table,mapply,%
> manglePackageName,makeActiveBinding,make.unique,make.names,lower.tri,%
> logb,lockEnvironment,lockBinding,loadingNamespaceInfo,loadedNamespaces,%
> loadURL,loadNamespace,list2env,list.files,library.dynam.unload,%
> library.dynam,lfactorial,levels<-.factor,levels<-,levels.default,%
> letters,length<-.factor,length<-,length.POSIXlt,lazyLoadDBfetch,%
> lazyLoad,labels.default,l10n_info,kappa.tri,kappa.qr,%
> kappa.lm,kappa.default,julian.POSIXt,julian.Date,julian,%
> isdebugged,isatty,isTRUE,isSymmetric.matrix,isSymmetric,%
> isSeekable,isS4,isRestart,isOpen,isNamespace,%
> isIncomplete,isBaseNamespace,is.vector,is.unsorted,is.table,%
> is.symbol,is.single,is.recursive,is.real,is.raw,%
> is.qr,is.primitive,is.pairlist,is.package_version,is.ordered,%
> is.object,is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,%
> is.numeric,is.null,is.nan,is.name,is.na<-.factor,%
> is.na<-.default,is.na<-,is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,%
> is.na,is.matrix,is.logical,is.loaded,is.list,%
> is.language,is.integer,is.infinite,is.function,is.finite,%
> is.factor,is.expression,is.environment,is.element,is.double,%
> is.data.frame,is.complex,is.character,is.call,is.atomic,%
> is.array,is.R,invokeRestartInteractively,invokeRestart,inverse.rle,%
> intToUtf8,intToBits,importIntoEnv,identity,identical,%
> icuSetCollate,iconvlist,iconv,gzfile,gzcon,%
> grepl,gregexpr,gettextf,gettext,getTaskCallbackNames,%
> getSrcLines,getRversion,getNumCConverters,getNativeSymbolInfo,getNamespaceVersion,%
> getNamespaceUsers,getNamespaceName,getNamespaceInfo,getNamespaceImports,getNamespaceExports,%
> getNamespace,getLoadedDLLs,getHook,getExportedValue,getDLLRegisteredRoutines.character,%
> getDLLRegisteredRoutines.DLLInfo,getDLLRegisteredRoutines,getConnection,getCallingDLLe,getCallingDLL,%
> getCConverterStatus,getCConverterDescriptions,getAllConnections,gc.time,formatDL,%
> format.pval,format.octmode,format.numeric_version,format.info,format.hexmode,%
> format.factor,format.difftime,format.default,format.data.frame,format.char,%
> format.POSIXlt,format.POSIXct,format.Date,format.AsIs,formals<-,%
> force,flush.connection,flush,findRestart,findPackageEnv,%
> findInterval,file.symlink,file.show,file.rename,file.remove,%
> file.path,file.info,file.exists,file.create,file.copy,%
> file.choose,file.append,file.access,fifo,factorial,%
> expm1,expand.grid,eval.parent,environmentName,environmentIsLocked,%
> environment<-,env.profile,enquote,encodeString,enc2utf8,%
> enc2native,emptyenv,eapply,dyn.unload,dyn.load,%
> duplicated.numeric_version,duplicated.matrix,duplicated.default,duplicated.data.frame,duplicated.array,%
> duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,droplevels,do.call,%
> dir.create,dimnames<-.data.frame,dimnames<-,dimnames.data.frame,dim<-,%
> dim.data.frame,difftime,diff.default,diff.POSIXt,diff.Date,%
> diag<-,determinant.matrix,determinant,det,delayedAssign,%
> default.stringsAsFactors,debugonce,data.matrix,data.frame,data.class,%
> dQuote,cut.default,cut.POSIXt,cut.Date,contributors,%
> conditionMessage.condition,conditionMessage,conditionCall.condition,conditionCall,computeRestarts,%
> comment<-,colnames<-,colSums,colMeans,codes<-,%
> codes.ordered,codes.factor,closeAllConnections,close.srcfile,close.connection,%
> class<-,chol.default,check_tzones,chartr,charToRaw,%
> char.expand,cbind.data.frame,casefold,capabilities,callCC,%
> c.numeric_version,c.noquote,c.POSIXlt,c.POSIXct,c.Date,%
> bzfile,by.default,by.data.frame,browserText,browserSetDebug,%
> browserCondition,bquote,body<-,bindtextdomain,bindingIsLocked,%
> bindingIsActive,baseenv,attributes<-,attr<-,attr.all.equal,%
> attachNamespace,assign,asS4,asS3,asNamespace,%
> as.vector.factor,as.vector,as.table.default,as.table,as.symbol,%
> as.single.default,as.single,as.real,as.raw,as.qr,%
> as.pairlist,as.package_version,as.ordered,as.octmode,as.numeric_version,%
> as.numeric,as.null.default,as.null,as.name,as.matrix.noquote,%
> as.matrix.default,as.matrix.data.frame,as.matrix.POSIXlt,as.matrix,as.logical.factor,%
> as.logical,as.list.numeric_version,as.list.function,as.list.factor,as.list.environment,%
> as.list.default,as.list.data.frame,as.list.POSIXct,as.list.Date,as.list,%
> as.integer,as.hexmode,as.function.default,as.function,as.factor,%
> as.expression.default,as.expression,as.environment,as.double.difftime,as.double.POSIXlt,%
> as.double,as.difftime,as.data.frame.vector,as.data.frame.ts,as.data.frame.table,%
> as.data.frame.raw,as.data.frame.ordered,as.data.frame.numeric_version,as.data.frame.numeric,as.data.frame.model.matrix,%
> as.data.frame.matrix,as.data.frame.logical,as.data.frame.list,as.data.frame.integer,as.data.frame.factor,%
> as.data.frame.difftime,as.data.frame.default,as.data.frame.data.frame,as.data.frame.complex,as.data.frame.character,%
> as.data.frame.array,as.data.frame.POSIXlt,as.data.frame.POSIXct,as.data.frame.Date,as.data.frame.AsIs,%
> as.data.frame,as.complex,as.character.srcref,as.character.octmode,as.character.numeric_version,%
> as.character.hexmode,as.character.factor,as.character.error,as.character.default,as.character.condition,%
> as.character.POSIXt,as.character.Date,as.character,as.call,as.array.default,%
> as.array,as.POSIXlt.numeric,as.POSIXlt.factor,as.POSIXlt.default,as.POSIXlt.dates,%
> as.POSIXlt.date,as.POSIXlt.character,as.POSIXlt.POSIXct,as.POSIXlt.Date,as.POSIXlt,%
> as.POSIXct.numeric,as.POSIXct.default,as.POSIXct.dates,as.POSIXct.date,as.POSIXct.POSIXlt,%
> as.POSIXct.Date,as.POSIXct,as.Date.numeric,as.Date.factor,as.Date.default,%
> as.Date.dates,as.Date.date,as.Date.character,as.Date.POSIXlt,as.Date.POSIXct,%
> as.Date,arrayInd,anyDuplicated.matrix,anyDuplicated.default,anyDuplicated.data.frame,%
> anyDuplicated.array,anyDuplicated,all.vars,all.names,all.equal.raw,%
> all.equal.numeric,all.equal.list,all.equal.language,all.equal.formula,all.equal.factor,%
> all.equal.default,all.equal.character,all.equal.POSIXct,all.equal,agrep,%
> addTaskCallback,addNA,Vectorize,T,Sys.which,%
> Sys.unsetenv,Sys.umask,Sys.timezone,Sys.time,Sys.sleep,%
> Sys.setlocale,Sys.setenv,Sys.readlink,Sys.putenv,Sys.localeconv,%
> Sys.info,Sys.glob,Sys.getpid,Sys.getlocale,Sys.getenv,%
> Sys.chmod,Sys.Date,Summary.numeric_version,Summary.factor,Summary.difftime,%
> Summary.data.frame,Summary.POSIXlt,Summary.POSIXct,Summary.Date,Reduce,%
> R_system_version,RNGversion,R.version.string,R.version,R.home,%
> R.Version,Position,Ops.ordered,Ops.numeric_version,Ops.factor,%
> Ops.difftime,Ops.data.frame,Ops.POSIXt,Ops.Date,Negate,%
> Math.factor,Math.difftime,Math.data.frame,Math.POSIXt,Math.Date,%
> Map,La.svd,La.eigen,La.chol2inv,La.chol,%
> LETTERS,ISOdatetime,ISOdate,Find,Filter,%
> F,Encoding<-,Encoding,Cstack_info%
1039c1033
< [3] "##    require(\"methods\", character = TRUE, quietly = TRUE)"
---
> [3] "    require(\"methods\", character = TRUE, quietly = TRUE)"
1374a1369
> Warning: closing unused connection 3 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/R/AllClasses.R?root=distr)
1382c1377
< survfitcoxph.fit,survfit,survexp.usr,survexp.us,survexp.mn,%
---
> survfit,survexp.usr,survexp.us,survexp.mnwhite,survexp.mn,%
1384,1394c1379,1389
< stanford2,ridge,rats,ratetableDate,ratetable,%
< qsurvreg,pyears,psurvreg,pspline,pbcseq,%
< pbc,ovarian,nwtco,mgus2,mgus1,%
< mgus,match.ratetable,lung,leukemia,labels.survreg,%
< kidney,jasa1,jasa,is.ratetable,is.na.ratetable,%
< is.na.coxph.penalty,is.na.Surv,is.Surv,heart,frailty.t,%
< frailty.gaussian,frailty.gamma,frailty,format.Surv,dsurvreg,%
< coxph.fit,coxph.detail,coxph.control,coxph,cox.zph,%
< colon,cluster,clogit,cgd,cch,%
< cancer,bladder2,bladder1,bladder,basehaz,%
< attrassign,aml,aareg,Surv%
---
> stanford2,ridge,rats,ratetable,qsurvreg,%
> pyears,psurvreg,pspline,pbcseq,pbc,%
> ovarian,nwtco,mgus2,mgus1,mgus,%
> match.ratetable,lung,leukemia,labels.survreg,kidney,%
> jasa1,jasa,is.ratetable,is.na.ratetable,is.na.coxph.penalty,%
> is.na.Surv,is.Surv,heart,frailty.t,frailty.gaussian,%
> frailty.gamma,frailty,format.Surv,dsurvreg,coxph.fit,%
> coxph.detail,coxph.control,coxph,cox.zph,colon,%
> cluster,clogit,cgd,cch,cancer,%
> bladder2,bladder1,bladder,basehaz,attrassign,%
> aml,aareg,Surv%
2051a2047,2048
> Warning: closing unused connection 4 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/R/BinomialDistribution.R?root=distr)
> Warning: closing unused connection 3 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/man/Binom-class.Rd?root=distr)
2053c2050
< [1,] "2.3.3"
---
> [1,] "2.3"  
2074c2071
<    [4] "##    require(\"methods\", character = TRUE, quietly = TRUE)"                                                                           
---
>    [4] "    require(\"methods\", character = TRUE, quietly = TRUE)"                                                                             
2795c2792
<  [725] "                                    log = log)"                                                                                         
---
>  [725] "                                    lower.tail = lower.tail, log.p = log.p)"                                                            
 OK
* checking package vignettes in 'inst/doc' ... OK
* checking PDF version of manual ... OK