* using log directory 'd:/Rcompile/CRANpkg/local/2.12/MetaQC.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'MetaQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MetaQC' version '0.1.6'
* checking package name space information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: doMC
* checking if this is a source package ... OK
* checking whether package 'MetaQC' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GMT2List: no visible binding for global variable 'x'
MetaQC: no visible global function definition for 'registerDoMC'
MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
  'g'
MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
  'd'
MetaQC : .CalcPval: no visible binding for global variable 'i'
MetaQC : .CalcPval: no visible binding for global variable 'g'
MetaQC : .CalcPval: no visible binding for global variable 'w'
MetaQC : .CalcPval: no visible binding for global variable 'j'
MetaQC : .CalcPval: no visible binding for global variable 'b'
MetaQC : EQC: no visible binding for global variable 'g'
MetaQC : EQC: no visible binding for global variable 'w'
MetaQC : AQCg: no visible binding for global variable 'i'
MetaQC : AQCp: no visible binding for global variable 'i'
MetaQC : CQCg: no visible binding for global variable 'dat'
MetaQC : CQCg: no visible binding for global variable 'pv'
MetaQC : CQCg: no visible binding for global variable 'i'
MetaQC : CQCp: no visible binding for global variable 'dat'
MetaQC : CQCp: no visible binding for global variable 'pv'
MetaQC : CQCp: no visible binding for global variable 'ii'
MetaQC : CQCp: no visible binding for global variable 'jj'
MetaQC : CQCp: no visible binding for global variable 'i'
MetaQC : IQC: no visible binding for global variable 'i'
MetaQC : .CalcDistOfStudies: no visible binding for global variable
  'ii'
MetaQC : .CalcDistOfStudies: no visible binding for global variable
  'jj'
MetaQC : .CalcScores: no visible binding for global variable 'd'
requireAll: no visible global function definition for 'biocLite'
* checking Rd files ... NOTE
prepare_Rd: MetaQC-package.Rd:30-31: Dropping empty section \seealso
prepare_Rd: MetaQC.Rd:55-57: Dropping empty section \details
prepare_Rd: MetaQC.Rd:71-73: Dropping empty section \note
prepare_Rd: cleanup.Rd:22-24: Dropping empty section \details
prepare_Rd: cleanup.Rd:34-36: Dropping empty section \note
prepare_Rd: plot.proto.Rd:25-27: Dropping empty section \details
prepare_Rd: plot.proto.Rd:37-39: Dropping empty section \note
prepare_Rd: print.proto.Rd:25-27: Dropping empty section \details
prepare_Rd: print.proto.Rd:37-39: Dropping empty section \note
prepare_Rd: requireAll.Rd:19-21: Dropping empty section \details
prepare_Rd: requireAll.Rd:31-33: Dropping empty section \note
prepare_Rd: requireAll.Rd:25-27: Dropping empty section \references
prepare_Rd: requireAll.Rd:37-39: Dropping empty section \seealso
prepare_Rd: runQC.Rd:38-40: Dropping empty section \details
prepare_Rd: runQC.Rd:50-52: Dropping empty section \note
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK