* using log directory 'd:/Rcompile/CRANpkg/local/2.12/Biograph.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'Biograph/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Biograph' version '1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Biograph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AgeTrans: no visible binding for global variable
  'date_in_month_or_year'
Biograph.long : <anonymous>: no visible binding for global variable
  'ncovariates'
Biograph.long : <anonymous>: no visible binding for global variable
  'namstates'
Biograph.long: no visible binding for global variable 'timeunit'
Biograph.long: no visible binding for global variable 'ncovariates'
Biograph.msm: no visible binding for global variable 'timeunit'
Biograph.msm : <anonymous>: no visible binding for global variable
  'ncovariates'
Biograph.msm : <anonymous>: no visible binding for global variable
  'namstates'
Biograph.msm: no visible binding for global variable 'namstates'
Biograph.mstate: no visible binding for global variable 'numstates'
Biograph.mstate: no visible binding for global variable 'namstates'
Biograph.mstate : <anonymous>: no visible binding for global variable
  'namstates'
Biograph.mvna: no visible binding for global variable 'timeunit'
Biograph.mvna: no visible binding for global variable 'namstates'
Biograph.mvna : <anonymous>: no visible binding for global variable
  'namstates'
CMC.ages: no visible binding for global variable 'timeunit'
CMC.years: no visible binding for global variable 'timeunit'
ChangeObservationWindow.e: no visible binding for global variable
  'nsample'
ChangeObservationWindow.t: no visible binding for global variable
  'timeunit'
Cumrates: no visible binding for global variable 'namstates'
Cumrates: no visible binding for global variable 'iagehigh'
Cumrates: no visible binding for global variable 'numstates'
Cumrates: no visible binding for global variable 'namage'
GLHS.Biograph: no visible binding for global variable 'rrdat'
LexisOccExp: no visible binding for global variable
  'date_in_month_or_year'
Lexislines.episodes: no visible binding for global variable 'survey'
Lexislines.episodes: no visible binding for global variable 'timeunit'
Lexislines.episodes: no visible binding for global variable 'namstates'
Lexislines.episodes: no visible binding for global variable 'DES'
Lexislines.episodes: no visible binding for global variable 'TstopY'
Lexislines.episodes: no visible binding for global variable 'Tstopage'
Lexislines.episodes: no visible binding for global variable 'lex.id'
MSLT.S: no visible binding for global variable 'numstates'
MSLT.S.plot: no visible binding for global variable 'namstates'
MSLT.S.plot: no visible binding for global variable 'numstates'
MSLT.e: no visible binding for global variable 'numstates'
Occup: no visible binding for global variable 'iagehigh'
Occup: no visible binding for global variable 'iagelow'
Occup: no visible binding for global variable 'namage'
Occup: no visible binding for global variable 'numstates'
Occup: no visible binding for global variable 'namstates'
OverviewTransitions: no visible binding for global variable 'iagelow'
OverviewTransitions: no visible binding for global variable 'iagehigh'
OverviewTransitions: no visible binding for global variable 'numstates'
OverviewTransitions: no visible binding for global variable 'namstates'
OverviewTransitions: no visible binding for global variable
  'date_in_month_or_year'
OverviewTransitions: no visible binding for global variable 'nage'
Parameters: no visible binding for '<<-' assignment to 'nsample'
Parameters: no visible binding for global variable 'numstates'
Parameters: no visible binding for global variable 'namstates'
Parameters: no visible binding for global variable 'nsample'
Parameters: no visible binding for '<<-' assignment to 'iagelow'
Parameters: no visible binding for '<<-' assignment to 'iagehigh'
Parameters: no visible binding for '<<-' assignment to 'nage'
Parameters: no visible binding for global variable 'iagehigh'
Parameters: no visible binding for global variable 'iagelow'
Parameters: no visible binding for '<<-' assignment to 'namage'
Parameters: no visible binding for '<<-' assignment to 'ncovariates'
Parameters: no visible binding for '<<-' assignment to 'ncmc_tr'
Parameters: no visible binding for '<<-' assignment to 'maxtrans'
Parameters: no visible binding for global variable 'ncmc_tr'
RateTable: no visible binding for global variable 'iagelow'
RateTable: no visible binding for global variable 'iagehigh'
RateTable: no visible binding for global variable 'numstates'
RateTable: no visible binding for global variable 'namstates'
RateTable: no visible binding for global variable 'nage'
Rates: no visible binding for global variable 'numstates'
Rates: no visible binding for global variable 'namage'
Rates: no visible binding for global variable 'namstates'
StackGraph: no visible binding for global variable 'numstates'
Trans: no visible binding for global variable 'iagelow'
Trans: no visible binding for global variable 'iagehigh'
Trans: no visible binding for global variable 'numstates'
Trans: no visible binding for global variable 'namstates'
Trans: no visible binding for global variable 'date_in_month_or_year'
Trans: no visible binding for global variable 'nage'
TransitionAB: no visible binding for global variable
  'date_in_month_or_year'
YearTrans: no visible binding for global variable
  'date_in_month_or_year'
p.OverviewEpisodes: no visible binding for global variable 'timeunit'
p.OverviewEpisodes: no visible binding for global variable 'numstates'
p.OverviewEpisodes: no visible binding for global variable 'namstates'
p.SamplePath: no visible binding for global variable 'namstates'
p.Trans: no visible binding for global variable 'numstates'
p.Trans: no visible binding for global variable 'namstates'
statesequence.ind: no visible binding for global variable 'namstates'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: mstate
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK