* using log directory 'd:/Rcompile/CRANpkg/local/2.10/stringkernels.Rcheck' * using R version 2.10.1 (2009-12-14) * using session charset: ISO8859-1 * checking for file 'stringkernels/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'stringkernels' version '0.8.9' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'stringkernels' can be installed ... ERROR Installation failed. The installation logfile: * installing *source* package 'stringkernels' ... ** libs making DLL ... make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.10/stringkernels/src' g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c GapWeighted.cpp -o GapWeighted.o GapWeighted.cpp: In function 'MatchList* createMatchListFrom(const SEQ*, const SEQ*, int, int, int, double, int, int)': GapWeighted.cpp:78: warning: comparison between signed and unsigned integer expressions GapWeighted.cpp: In function 'void GapWeightedSubsequences_Sparse(double*, const SEQ*, const SEQ*, int, int, int, int, double, int)': GapWeighted.cpp:225: warning: comparison between signed and unsigned integer expressions GapWeighted.cpp:239: warning: comparison between signed and unsigned integer expressions GapWeighted.cpp:260: warning: comparison between signed and unsigned integer expressions GapWeighted.cpp:262: warning: comparison between signed and unsigned integer expressions GapWeighted.cpp:271: warning: comparison between signed and unsigned integer expressions GapWeighted.cpp:290: warning: comparison between signed and unsigned integer expressions g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c brweight.cpp -o brweight.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c ctable.cpp -o ctable.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c cweight.cpp -o cweight.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c esa.cpp -o esa.o In file included from msufsort.h:44, from wmsufsort.h:45, from esa.cpp:67: introsort.h:49: warning: ignoring #pragma warning introsort.h:309: warning: ignoring #pragma warning In file included from wmsufsort.h:45, from esa.cpp:67: msufsort.h: In member function 'void MSufSort::ShowProgress()': msufsort.h:910: warning: unused variable 'p' esa.cpp: In constructor 'ESA::ESA(const UInt32&, SYMBOL*, int)': esa.cpp:114: warning: comparison between signed and unsigned integer expressions g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c expdecayweight.cpp -o expdecayweight.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c inductionsort.cpp -o inductionsort.o In file included from inductionsort.h:30, from inductionsort.cpp:27: introsort.h:49: warning: ignoring #pragma warning introsort.h:309: warning: ignoring #pragma warning g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c kspectrumweight.cpp -o kspectrumweight.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c lcp.cpp -o lcp.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c msufsort.cpp -o msufsort.o In file included from msufsort.h:44, from msufsort.cpp:27: introsort.h:49: warning: ignoring #pragma warning introsort.h:309: warning: ignoring #pragma warning In file included from msufsort.cpp:27: msufsort.h: In member function 'void MSufSort::ShowProgress()': msufsort.h:910: warning: unused variable 'p' msufsort.cpp: In constructor 'MSufSort::MSufSort()': msufsort.cpp:67: warning: comparison between signed and unsigned integer expressions msufsort.cpp: In member function 'void MSufSort::InitialSort()': msufsort.cpp:224: warning: comparison between signed and unsigned integer expressions g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c stringkernel.cpp -o stringkernel.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c wkasailcp.cpp -o wkasailcp.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c wmsufsort.cpp -o wmsufsort.o In file included from msufsort.h:44, from wmsufsort.h:45, from wmsufsort.cpp:47: introsort.h:49: warning: ignoring #pragma warning introsort.h:309: warning: ignoring #pragma warning In file included from wmsufsort.h:45, from wmsufsort.cpp:47: msufsort.h: In member function 'void MSufSort::ShowProgress()': msufsort.h:910: warning: unused variable 'p' g++ -shared -s -o stringkernels.dll tmp.def GapWeighted.o brweight.o ctable.o cweight.o esa.o expdecayweight.o inductionsort.o kspectrumweight.o lcp.o msufsort.o stringkernel.o wkasailcp.o wmsufsort.o -Ld:/Rcompile/recent/R-2.10.1/bin -lRblas -lgfortran -Ld:/Rcompile/recent/R-2.10.1/bin -lRlapack -Ld:/Rcompile/recent/R-2.10.1/bin -lR make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.10/stringkernels/src' ... done ** R ** preparing package for lazy loading Error in loadNamespace(i, c(lib.loc, .libPaths())) : there is no package called 'tm' Error : package 'openNLP' could not be loaded ERROR: lazy loading failed for package 'stringkernels' * removing 'd:/Rcompile/CRANpkg/lib/2.10/stringkernels' * restoring previous 'd:/Rcompile/CRANpkg/lib/2.10/stringkernels'