* using log directory 'd:/Rcompile/CRANpkg/local/2.10/quantchem.Rcheck' * using R version 2.10.1 (2009-12-14) * using session charset: ISO8859-1 * checking for file 'quantchem/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'quantchem' version '0.12-1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'quantchem' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot.lmcal: no visible binding for global variable 'fit' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'AIC.cal': AIC.cal S3 methods shown with full name in documentation object 'anova.lmcal, anova.nlscal': anova.lmcal anova.nlscal S3 methods shown with full name in documentation object 'confint.cal': confint.cal S3 methods shown with full name in documentation object 'plot.lmcal, plot.nlscal': plot.lmcal plot.nlscal S3 methods shown with full name in documentation object 'predict.lmcal, predict.nlscal': predict.lmcal predict.nlscal S3 methods shown with full name in documentation object 'residuals.cal': residuals.cal S3 methods shown with full name in documentation object 'summary.lmcal, summary.nlscal': summary.lmcal summary.nlscal The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK