* using log directory 'd:/Rcompile/CRANpkg/local/2.10/psgp.Rcheck' * using R version 2.10.1 (2009-12-14) * using session charset: ISO8859-1 * checking for file 'psgp/DESCRIPTION' ... OK * this is package 'psgp' version '0.2-11' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'psgp' can be installed ... ERROR Installation failed. The installation logfile: * installing *source* package 'psgp' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs making DLL ... make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.10/psgp/src' g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c astonGeostats.cpp -o astonGeostats.o astonGeostats.cpp: In function 'void learnParameters(int, double*, double*, int, int*, int*, char**, double*)': astonGeostats.cpp:94: warning: 'defaultLikelihood' may be used uninitialized in this function astonGeostats.cpp: In function 'void makePredictions(int, int, double*, double*, double*, int, int*, int*, char**, double*, double*, double*)': astonGeostats.cpp:200: warning: 'defaultLikelihood' may be used uninitialized in this function g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c RInterface.cpp -o RInterface.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c gaussianProcesses/GaussianProcess.cpp -o gaussianProcesses/GaussianProcess.o gaussianProcesses/GaussianProcess.h: In constructor 'GaussianProcess::GaussianProcess(int, int, itpp::mat&, itpp::vec&, CovarianceFunction&)': gaussianProcesses/GaussianProcess.h:68: warning: 'GaussianProcess::Observations' will be initialized after gaussianProcesses/GaussianProcess.h:66: warning: 'CovarianceFunction& GaussianProcess::covFunc' gaussianProcesses/GaussianProcess.cpp:6: warning: when initialized here gaussianProcesses/GaussianProcess.h:66: warning: 'GaussianProcess::covFunc' will be initialized after gaussianProcesses/GaussianProcess.cpp:6: warning: base 'ForwardModel' gaussianProcesses/GaussianProcess.cpp:6: warning: when initialized here g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c gaussianProcesses/PSGP.cpp -o gaussianProcesses/PSGP.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c gaussianProcesses/ForwardModel.cpp -o gaussianProcesses/ForwardModel.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/ConstantCF.cpp -o covarianceFunctions/ConstantCF.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/CovarianceFunction.cpp -o covarianceFunctions/CovarianceFunction.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/ExponentialCF.cpp -o covarianceFunctions/ExponentialCF.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/Matern5CF.cpp -o covarianceFunctions/Matern5CF.o covarianceFunctions/Matern5CF.cpp: In member function 'virtual double Matern5CF::getParameter(int) const': covarianceFunctions/Matern5CF.cpp:107: warning: control reaches end of non-void function covarianceFunctions/Matern5CF.cpp: In member function 'virtual std::string Matern5CF::getParameterName(int) const': covarianceFunctions/Matern5CF.cpp:64: warning: control reaches end of non-void function g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/WhiteNoiseCF.cpp -o covarianceFunctions/WhiteNoiseCF.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/SumCovarianceFunction.cpp -o covarianceFunctions/SumCovarianceFunction.o covarianceFunctions/SumCovarianceFunction.cpp: In member function 'virtual Transform* SumCovarianceFunction::getTransform(int) const': covarianceFunctions/SumCovarianceFunction.cpp:105: warning: control reaches end of non-void function g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/Transform.cpp -o covarianceFunctions/Transform.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/LogTransform.cpp -o covarianceFunctions/LogTransform.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c covarianceFunctions/IdentityTransform.cpp -o covarianceFunctions/IdentityTransform.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c likelihoodModels/AnalyticLikelihood.cpp -o likelihoodModels/AnalyticLikelihood.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c likelihoodModels/LikelihoodType.cpp -o likelihoodModels/LikelihoodType.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c likelihoodModels/GaussianLikelihood.cpp -o likelihoodModels/GaussianLikelihood.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c optimisation/Optimisable.cpp -o optimisation/Optimisable.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c optimisation/ModelTrainer.cpp -o optimisation/ModelTrainer.o optimisation/ModelTrainer.cpp: In member function 'void ModelTrainer::checkGradient()': optimisation/ModelTrainer.cpp:196: warning: unused variable 'pos' g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c optimisation/SCGModelTrainer.cpp -o optimisation/SCGModelTrainer.o g++ -I"d:/Rcompile/recent/R-2.10.1/include" -Id:/Rcompile/CRANpkg/extralibs/itpplib/include -g -Wall -fmessage-length=0 -DNDEBUG -O3 -pipe -I. -O2 -Wall -c itppext/itppext.cpp -o itppext/itppext.o itppext/itppext.cpp: In function 'void itppext::tokenise(const std::string&, std::vector, std::allocator >, std::allocator, std::allocator > > >&, const std::string&, int)': itppext/itppext.cpp:284: warning: comparison between signed and unsigned integer expressions itppext/itppext.cpp:296: warning: comparison between signed and unsigned integer expressions g++ -shared -s -o psgp.dll tmp.def astonGeostats.o RInterface.o gaussianProcesses/GaussianProcess.o gaussianProcesses/PSGP.o gaussianProcesses/ForwardModel.o covarianceFunctions/ConstantCF.o covarianceFunctions/CovarianceFunction.o covarianceFunctions/ExponentialCF.o covarianceFunctions/Matern5CF.o covarianceFunctions/WhiteNoiseCF.o covarianceFunctions/SumCovarianceFunction.o covarianceFunctions/Transform.o covarianceFunctions/LogTransform.o covarianceFunctions/IdentityTransform.o likelihoodModels/AnalyticLikelihood.o likelihoodModels/LikelihoodType.o likelihoodModels/GaussianLikelihood.o optimisation/Optimisable.o optimisation/ModelTrainer.o optimisation/SCGModelTrainer.o itppext/itppext.o -Ld:/Rcompile/CRANpkg/extralibs/itpplib/lib -litpp -llapack -lblas -lgfortranbegin -lgfortran -lmingw32 -lmoldname -lmingwex -lmsvcrt -luser32 -lkernel32 -ladvapi32 -lshell32 -lR -lg2c -Ld:/Rcompile/recent/R-2.10.1/bin -lR make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.10/psgp/src' ... done ** R ** inst ** preparing package for lazy loading Error : package 'sp' required by 'intamap' could not be found ERROR: lazy loading failed for package 'psgp' * removing 'd:/Rcompile/CRANpkg/lib/2.10/psgp' * restoring previous 'd:/Rcompile/CRANpkg/lib/2.10/psgp'