* using log directory 'd:/Rcompile/CRANpkg/local/2.10/prabclus.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'prabclus/DESCRIPTION' ... OK
* this is package 'prabclus' version '2.2-2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prabclus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
build.nblist: no visible global function definition for 'nb2listw'
prab.sarestimate: no visible global function definition for
  'errorsarlm'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking differences from 'prabclus-Ex.Rout' to 'prabclus-Ex.Rout.save' ...
1d0
< > options(pager = "console")
3,7d1
< 
< by using mclust, invoked on its own or through another package,
< you accept the license agreement in the mclust LICENSE file
< and at http://www.stat.washington.edu/mclust/license.txt
< 
23a18,22
> 
> by using mclust, invoked on its own or through another package,
> you accept the license agreement in the mclust LICENSE file
> and at http://www.stat.washington.edu/mclust/license.txt
> 
30a30,32
> 
> detaching 'package:mclust'
> 
280d281
< > # This uses example data file Heterotrigona_indoFO.dat
5171a5173,5177
> 
> by using mclust, invoked on its own or through another package,
> you accept the license agreement in the mclust LICENSE file
> and at http://www.stat.washington.edu/mclust/license.txt
> 
5199a5206,5208
> 
> detaching 'package:mclust'
> 
5688a5698,5702
> 
> by using mclust, invoked on its own or through another package,
> you accept the license agreement in the mclust LICENSE file
> and at http://www.stat.washington.edu/mclust/license.txt
> 
5765a5780,5782
> 
> detaching 'package:mclust'
> 
7054a7072,7074
> 
> detaching 'package:mvtnorm'
> 
 OK
* checking tests ... ERROR
Running the tests in 'tests/prabclustests.R' failed.
Last 13 lines of output:
  +                   file.format="decimal2",neighbors=TRUE)
  > vei <- prabinit(prabmatrix=veronica[1:50,],
  +                 neighborhood=vnb$nblist,nbbetweenregions=FALSE,
  +                 distance="jaccard")
  > print(vei)
  Presence-absence matrix object with
  50  species and  583  regions,
  including species/individuals neighborhoods and 
  between-species distance matrix of type  jaccard .
  > 
  > library(spdep)
  Error: package 'sp' required by 'spdep' could not be found
  Execution halted