* using log directory 'd:/Rcompile/CRANpkg/local/2.10/polysat.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'polysat/DESCRIPTION' ... OK
* this is package 'polysat' version '1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'polysat' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: Lynch.distance.Rd:53-55: Dropping empty section \note
prepare_Rd: Samples.Rd:182-184: Dropping empty section \note
prepare_Rd: Samples.Rd:176-178: Dropping empty section \references
prepare_Rd: calcFst.Rd:58-60: Dropping empty section \note
prepare_Rd: deleteSamples.Rd:47-49: Dropping empty section \references
prepare_Rd: editGenotypes.Rd:55-57: Dropping empty section \note
prepare_Rd: editGenotypes.Rd:49-51: Dropping empty section \references
prepare_Rd: estimatePloidy.Rd:63-65: Dropping empty section \note
prepare_Rd: estimatePloidy.Rd:57-59: Dropping empty section \references
prepare_Rd: find.missing.gen.Rd:28-30: Dropping empty section \details
prepare_Rd: find.missing.gen.Rd:43-45: Dropping empty section \note
prepare_Rd: find.missing.gen.Rd:37-39: Dropping empty section \references
prepare_Rd: genambig-class.Rd:164-166: Dropping empty section \note
prepare_Rd: genambig-class.Rd:158-160: Dropping empty section \references
prepare_Rd: genambig.to.genbinary.Rd:54-56: Dropping empty section \note
prepare_Rd: genambig.to.genbinary.Rd:48-50: Dropping empty section \references
prepare_Rd: genbinary-class.Rd:187-189: Dropping empty section \note
prepare_Rd: genbinary-class.Rd:181-183: Dropping empty section \references
prepare_Rd: gendata-class.Rd:199-201: Dropping empty section \note
prepare_Rd: gendata-class.Rd:193-195: Dropping empty section \references
prepare_Rd: isMissing.Rd:52-54: Dropping empty section \note
prepare_Rd: isMissing.Rd:46-48: Dropping empty section \references
prepare_Rd: meandist.from.array.Rd:66-68: Dropping empty section \note
prepare_Rd: meandist.from.array.Rd:60-62: Dropping empty section \references
prepare_Rd: meandistance.matrix.Rd:51-52: Dropping empty section \references
prepare_Rd: read.ATetra.Rd:40-42: Dropping empty section \note
prepare_Rd: read.GenoDive.Rd:66-68: Dropping empty section \note
prepare_Rd: read.Structure.Rd:109-111: Dropping empty section \note
prepare_Rd: read.Tetrasat.Rd:56-58: Dropping empty section \note
prepare_Rd: simpleFreq.Rd:71-73: Dropping empty section \note
prepare_Rd: simpleFreq.Rd:65-67: Dropping empty section \references
prepare_Rd: viewGenotypes.Rd:49-51: Dropping empty section \note
prepare_Rd: viewGenotypes.Rd:43-45: Dropping empty section \references
prepare_Rd: write.ATetra.Rd:54-56: Dropping empty section \note
prepare_Rd: write.GeneMapper.Rd:70-72: Dropping empty section \note
prepare_Rd: write.GenoDive.Rd:72-74: Dropping empty section \note
prepare_Rd: write.SPAGeDi.Rd:95-97: Dropping empty section \note
prepare_Rd: write.Tetrasat.Rd:73-75: Dropping empty section \note
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic '[' and siglist 'genambig,ANY,ANY,missing'
  generic '[' and siglist 'genbinary,ANY,ANY,missing'
  generic '[' and siglist 'gendata,ANY,ANY,missing'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking PDF version of manual ... OK