* using log directory 'd:/Rcompile/CRANpkg/local/2.10/mkin.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'mkin/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mkin' version '0.7-8'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'mkin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mkin_long_to_wide: no visible binding for global variable 'name'
mkin_long_to_wide: no visible binding for global variable 'value'
mkinfit: no visible binding for global variable 'name'
mkinfit : cost: no visible binding for global variable 'name'
mkinfit : cost: no visible binding for global variable 'value'
mkinplot: no visible binding for global variable 'type'
mkinplot: no visible binding for global variable 'variable'
mkinplot: no visible binding for global variable 'observed'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... ERROR
Running examples in 'mkin-Ex.R' failed.
The error most likely occurred in:

> ### * mkinfit
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: mkinfit
> ### Title: Fit a kinetic model to data with one or more state variables.
> ### Aliases: mkinfit
> ### Keywords: models optimize
> 
> ### ** Examples
> 
> # One parent compound, one metabolite, both single first order.
> SFO_SFO <- mkinmod(
+   parent = list(type = "SFO", to = "m1", sink = TRUE),
+   m1 = list(type = "SFO"))
> # Fit the model to the FOCUS example dataset D using defaults
> fit <- mkinfit(SFO_SFO, FOCUS_2006_D)
Model cost at call  1 :  18994.29 
Model cost at call  3 :  18994.29 
Model cost at call  7 :  10641.39 
Model cost at call  8 :  10641.39 
Model cost at call  12 :  7145.411 
Model cost at call  14 :  7145.41 
Model cost at call  17 :  411.9753 
Model cost at call  18 :  411.9751 
Model cost at call  22 :  371.2194 
Model cost at call  23 :  371.2194 
Model cost at call  27 :  371.2127 
Model cost at call  31 :  371.2127 
Model cost at call  32 :  371.2127 
Model cost at call  37 :  371.2127 
Model cost at call  39 :  371.2127 
Model cost at call  41 :  371.2127 
Model cost at call  45 :  371.2127 
Error in as.data.frame.default(x) : 
  cannot coerce class "formula" into a data.frame
Calls: mkinfit ... is.data.frame -> inherits -> as.data.frame -> as.data.frame.default
Execution halted