* using log directory 'd:/Rcompile/CRANpkg/local/2.10/caret.Rcheck' * using R version 2.10.1 (2009-12-14) * using session charset: ISO8859-1 * checking for file 'caret/DESCRIPTION' ... OK * this is package 'caret' version '4.64' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'caret' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE bwplot.diff.resamples: no visible binding for global variable 'Metric' bwplot.resamples: no visible binding for global variable 'Model' bwplot.resamples: no visible binding for global variable 'Metric' createGrid : lvqGrid: no visible binding for global variable '.k' createGrid : lvqGrid: no visible binding for global variable '.size' createModel: possible error in rda(trainX, trainY, gamma = tuneValue$.gamma, lambda = tuneValue$.lambda, ...): unused argument(s) (gamma = tuneValue$.gamma, lambda = tuneValue$.lambda) createModel: no visible global function definition for 'randomForestNWS' createModel: no visible global function definition for 'rfLSF' createModel: possible error in rvm(as.matrix(trainX), trainY, kernel = polydot, kpar = list(degree = tuneValue$.degree, scale = tuneValue$.scale, offset = 1), ...): unused argument(s) (kernel = polydot, kpar = list(degree = tuneValue$.degree, scale = tuneValue$.scale, offset = 1)) createModel: possible error in rvm(as.matrix(trainX), trainY, kernel = rbfdot, kpar = list(sigma = tuneValue$.sigma), ...): unused argument(s) (kernel = rbfdot, kpar = list(sigma = tuneValue$.sigma)) createModel: possible error in rvm(as.matrix(trainX), trainY, kernel = vanilladot(), ...): unused argument(s) (kernel = vanilladot()) densityplot.diff.resamples: no visible binding for global variable 'Metric' densityplot.diff.resamples: no visible binding for global variable 'ind' densityplot.resamples: no visible binding for global variable 'Model' densityplot.resamples: no visible binding for global variable 'Metric' dotplot.resamples: no visible binding for global variable 'Model' dotplot.resamples: no visible binding for global variable 'Metric' icr.formula: no visible binding for global variable 'thresh' levelplot.diff.resamples: no visible binding for global variable 'Metric' plot.rfe: no visible binding for global variable 'Selected' plotClassProbs: no visible binding for global variable 'Observed' predictionFunction: possible error in attributes(modelFit, "model"): unused argument(s) ("model") predictionFunction: no visible binding for global variable '.alpha' predictors.gbm: no visible binding for global variable 'rel.inf' predictors.sda: no visible binding for global variable 'varIndex' predictors.smda: no visible binding for global variable 'varIndex' resamples.default: no visible binding for global variable 'Variables' rfe.default: no visible binding for global variable 'Variables' splom.resamples: no visible binding for global variable 'Model' splom.resamples: no visible binding for global variable 'Metric' tuneScheme: no visible binding for global variable '.alpha' tuneScheme: no visible binding for global variable '.phi' tuneScheme: no visible binding for global variable '.lambda' varImp.gam: no visible binding for global variable 'test' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * checking PDF version of manual ... OK