* using log directory 'd:/Rcompile/CRANpkg/local/2.10/aroma.affymetrix.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'aroma.affymetrix/DESCRIPTION' ... OK
* this is package 'aroma.affymetrix' version '1.7.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aroma.affymetrix' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
doCRMA.default: possible error in header(fileLog, "Log file created by
  doCRMA() in the aroma.affymetrix package"): unused argument(s) ("Log
  file created by doCRMA() in the aroma.affymetrix package")
doCRMA.default: possible error in header(log, "Setting up raw data
  set(s)"): unused argument(s) ("Setting up raw data set(s)")
doCRMA.default: possible error in header(log, "Asserting that all
  annotation data needed is available"): unused argument(s) ("Asserting
  that all annotation data needed is available")
doCRMA.default: possible error in header(log, "Calibrating for allelic
  crosstalk"): unused argument(s) ("Calibrating for allelic crosstalk")
doCRMA.default: possible error in header(log, "Summarizing probe
  signals"): unused argument(s) ("Summarizing probe signals")
doCRMA.default: possible error in header(log, "Normalizing for
  fragment-length effects"): unused argument(s) ("Normalizing for
  fragment-length effects")
doCRMA.default: possible error in header(log, "Returning results"):
  unused argument(s) ("Returning results")
writeImages.SpatialReporter: possible error in writeImage(df, other =
  refFile, path = path, transforms = colorMap$transforms, palette =
  colorMap$palette, tags = tags, ..., verbose = less(verbose, 5)):
  unused argument(s) (other = refFile, path = path, transforms =
  colorMap$transforms, palette = colorMap$palette, tags = tags, verbose
  = less(verbose, 5))
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking PDF version of manual ... OK