* using log directory 'd:/Rcompile/CRANpkg/local/2.10/adegenet.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'adegenet/DESCRIPTION' ... OK
* this is package 'adegenet' version '1.2-6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'adegenet' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chooseCN: no visible global function definition for 'tri2nb'
chooseCN: no visible global function definition for 'gabrielneigh'
chooseCN: no visible global function definition for 'graph2nb'
chooseCN: no visible global function definition for 'relativeneigh'
chooseCN: no visible global function definition for 'dnearneigh'
chooseCN: no visible global function definition for 'knearneigh'
chooseCN: no visible global function definition for 'knn2nb'
chooseCN: no visible global function definition for 'nb2listw'
chooseCN: no visible global function definition for 'mat2listw'
plot.spca: no visible global function definition for 'card'
spca: no visible global function definition for 'mat2listw'
spca: no visible global function definition for 'nb2listw'
summary.spca: no visible global function definition for 'listw2mat'
summary.spca: no visible binding for global variable 'lag.listw'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... ERROR
Running examples in 'adegenet-Ex.R' failed.
The error most likely occurred in:

> ### * chooseCN
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: chooseCN
> ### Title: Function to choose a connection network
> ### Aliases: chooseCN
> ### Keywords: spatial utilities
> 
> ### ** Examples
> 
> data(nancycats)
> if(require(spdep) & require(ade4)){
+ 
+ par(mfrow=c(2,2))
+ cn1 <- chooseCN(nancycats@other$xy,ask=FALSE,type=1)
+ cn2 <- chooseCN(nancycats@other$xy,ask=FALSE,type=2)
+ cn3 <- chooseCN(nancycats@other$xy,ask=FALSE,type=3)
+ cn4 <- chooseCN(nancycats@other$xy,ask=FALSE,type=4)
+ par(mfrow=c(1,1))
+ }
Loading required package: spdep
Error: package 'sp' required by 'spdep' could not be found
Execution halted