* using log directory 'd:/Rcompile/CRANpkg/local/2.10/RBrownie.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'RBrownie/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RBrownie' version '0.0.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RBrownie' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
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prepare_Rd: is.contData.Rd:31-33: Dropping empty section \note
prepare_Rd: is.contData.Rd:25-27: Dropping empty section \references
prepare_Rd: is.contData.Rd:37-39: Dropping empty section \seealso
prepare_Rd: is.contData.Rd:40-41: Dropping empty section \examples
prepare_Rd: is.discData.Rd:19-21: Dropping empty section \details
prepare_Rd: is.discData.Rd:22-28: Dropping empty section \value
prepare_Rd: is.discData.Rd:35-37: Dropping empty section \note
prepare_Rd: is.discData.Rd:29-31: Dropping empty section \references
prepare_Rd: is.discData.Rd:41-43: Dropping empty section \seealso
prepare_Rd: is.discData.Rd:44-46: Dropping empty section \examples
prepare_Rd: is.simmap.Rd:34-36: Dropping empty section \note
prepare_Rd: is.simmap.Rd:28-30: Dropping empty section \references
prepare_Rd: is.simmap.Rd:40-42: Dropping empty section \seealso
prepare_Rd: is.taxaname.internal.Rd:19-21: Dropping empty section \details
prepare_Rd: is.taxaname.internal.Rd:22-28: Dropping empty section \value
prepare_Rd: is.taxaname.internal.Rd:35-37: Dropping empty section \note
prepare_Rd: is.taxaname.internal.Rd:29-31: Dropping empty section \references
prepare_Rd: is.taxaname.internal.Rd:41-43: Dropping empty section \seealso
prepare_Rd: is.taxaname.internal.Rd:44-46: Dropping empty section \examples
prepare_Rd: is_valid_datatype.Rd:19-21: Dropping empty section \details
prepare_Rd: is_valid_datatype.Rd:22-28: Dropping empty section \value
prepare_Rd: is_valid_datatype.Rd:35-37: Dropping empty section \note
prepare_Rd: is_valid_datatype.Rd:32-34: Dropping empty section \author
prepare_Rd: is_valid_datatype.Rd:29-31: Dropping empty section \references
prepare_Rd: is_valid_datatype.Rd:41-43: Dropping empty section \seealso
prepare_Rd: is_valid_datatype.Rd:44-45: Dropping empty section \examples
prepare_Rd: is_valid_datatype_bound.Rd:19-21: Dropping empty section \details
prepare_Rd: is_valid_datatype_bound.Rd:22-28: Dropping empty section \value
prepare_Rd: is_valid_datatype_bound.Rd:35-37: Dropping empty section \note
prepare_Rd: is_valid_datatype_bound.Rd:32-34: Dropping empty section \author
prepare_Rd: is_valid_datatype_bound.Rd:29-31: Dropping empty section \references
prepare_Rd: is_valid_datatype_bound.Rd:41-43: Dropping empty section \seealso
prepare_Rd: is_valid_datatype_bound.Rd:44-45: Dropping empty section \examples
prepare_Rd: is_valid_datatype_prob.Rd:19-21: Dropping empty section \details
prepare_Rd: is_valid_datatype_prob.Rd:22-28: Dropping empty section \value
prepare_Rd: is_valid_datatype_prob.Rd:35-37: Dropping empty section \note
prepare_Rd: is_valid_datatype_prob.Rd:32-34: Dropping empty section \author
prepare_Rd: is_valid_datatype_prob.Rd:29-31: Dropping empty section \references
prepare_Rd: is_valid_datatype_prob.Rd:41-43: Dropping empty section \seealso
prepare_Rd: is_valid_datatype_prob.Rd:44-46: Dropping empty section \examples
prepare_Rd: isback.Rd:22-24: Dropping empty section \details
prepare_Rd: isback.Rd:25-31: Dropping empty section \value
prepare_Rd: isback.Rd:38-40: Dropping empty section \note
prepare_Rd: isback.Rd:32-34: Dropping empty section \references
prepare_Rd: isback.Rd:44-46: Dropping empty section \seealso
prepare_Rd: isback.Rd:47-49: Dropping empty section \examples
prepare_Rd: nSubNodes.Rd:19-20: Dropping empty section \details
prepare_Rd: nSubNodes.Rd:30-32: Dropping empty section \note
prepare_Rd: nSubNodes.Rd:24-26: Dropping empty section \references
prepare_Rd: nSubNodes.Rd:36-38: Dropping empty section \seealso
prepare_Rd: parrot.Rd:20-21: Dropping empty section \references
prepare_Rd: phyextPlot.Rd:62-63: Dropping empty section \value
prepare_Rd: phyextPlot.Rd:69-70: Dropping empty section \note
prepare_Rd: phyextPlot.Rd:64-65: Dropping empty section \references
prepare_Rd: phyextPlot.Rd:74-76: Dropping empty section \seealso
prepare_Rd: plot.censored.Rd:43-49: Dropping empty section \value
prepare_Rd: plot.censored.Rd:56-58: Dropping empty section \note
prepare_Rd: plot.censored.Rd:50-52: Dropping empty section \references
prepare_Rd: plot.censored.Rd:62-64: Dropping empty section \seealso
prepare_Rd: plot.taxaset.Rd:40-42: Dropping empty section \details
prepare_Rd: plot.taxaset.Rd:43-49: Dropping empty section \value
prepare_Rd: plot.taxaset.Rd:56-58: Dropping empty section \note
prepare_Rd: plot.taxaset.Rd:50-52: Dropping empty section \references
prepare_Rd: plot.taxaset.Rd:62-64: Dropping empty section \seealso
prepare_Rd: rcpp_hello_world.Rd:14-16: Dropping empty section \details
prepare_Rd: rcpp_hello_world.Rd:17-23: Dropping empty section \value
prepare_Rd: rcpp_hello_world.Rd:30-32: Dropping empty section \note
prepare_Rd: rcpp_hello_world.Rd:24-26: Dropping empty section \references
prepare_Rd: rcpp_hello_world.Rd:36-38: Dropping empty section \seealso
prepare_Rd: rcpp_hello_world.Rd:39-41: Dropping empty section \examples
prepare_Rd: read.analysis.output.Rd:42-44: Dropping empty section \note
prepare_Rd: read.analysis.output.Rd:36-38: Dropping empty section \references
prepare_Rd: read.analysis.output.Rd:48-50: Dropping empty section \seealso
prepare_Rd: read.analysis.output.Rd:51-53: Dropping empty section \examples
prepare_Rd: read.brownie.string.Rd:22-24: Dropping empty section \details
prepare_Rd: read.brownie.string.Rd:25-29: Dropping empty section \value
prepare_Rd: read.brownie.string.Rd:36-38: Dropping empty section \note
prepare_Rd: read.brownie.string.Rd:30-32: Dropping empty section \references
prepare_Rd: read.brownie.string.Rd:42-44: Dropping empty section \seealso
prepare_Rd: read.characters2.Rd:34-36: Dropping empty section \note
prepare_Rd: read.characters2.Rd:28-30: Dropping empty section \references
prepare_Rd: read.characters2.Rd:43-45: Dropping empty section \examples
prepare_Rd: read.continuous.output.Rd:37-39: Dropping empty section \note
prepare_Rd: read.continuous.output.Rd:31-33: Dropping empty section \references
prepare_Rd: read.continuous.output.Rd:46-48: Dropping empty section \examples
prepare_Rd: read.discrete.output.Rd:42-44: Dropping empty section \note
prepare_Rd: read.discrete.output.Rd:36-38: Dropping empty section \references
prepare_Rd: read.discrete.output.Rd:52-54: Dropping empty section \examples
prepare_Rd: read.nexus.block.Rd:43-45: Dropping empty section \note
prepare_Rd: read.nexus.block.Rd:37-39: Dropping empty section \references
prepare_Rd: read.nexus.block.Rd:49-51: Dropping empty section \seealso
prepare_Rd: read.nexus.block.Rd:52-54: Dropping empty section \examples
prepare_Rd: read.nexus.simmap.Rd:34-36: Dropping empty section \note
prepare_Rd: read.nexus.simmap.Rd:28-30: Dropping empty section \references
prepare_Rd: read.nexus.simmap.Rd:40-42: Dropping empty section \seealso
prepare_Rd: read.nexus.simmap.Rd:43-45: Dropping empty section \examples
prepare_Rd: read.ratetest.output.Rd:37-39: Dropping empty section \note
prepare_Rd: read.ratetest.output.Rd:31-33: Dropping empty section \references
prepare_Rd: read.ratetest.output.Rd:46-48: Dropping empty section \examples
prepare_Rd: read.simmap.Rd:28-30: Dropping empty section \details
prepare_Rd: read.simmap.Rd:40-42: Dropping empty section \note
prepare_Rd: read.simmap.Rd:34-36: Dropping empty section \references
prepare_Rd: read.simmap.Rd:46-48: Dropping empty section \seealso
prepare_Rd: readBrownie.Rd:33-35: Dropping empty section \note
prepare_Rd: readBrownie.Rd:27-29: Dropping empty section \references
prepare_Rd: readBrownie.Rd:39-41: Dropping empty section \seealso
prepare_Rd: rm.ending.Rd:19-21: Dropping empty section \details
prepare_Rd: rm.ending.Rd:22-28: Dropping empty section \value
prepare_Rd: rm.ending.Rd:35-37: Dropping empty section \note
prepare_Rd: rm.ending.Rd:29-31: Dropping empty section \references
prepare_Rd: rm.ending.Rd:41-43: Dropping empty section \seealso
prepare_Rd: rm.ending.Rd:44-46: Dropping empty section \examples
prepare_Rd: run.analysis.Rd:34-36: Dropping empty section \note
prepare_Rd: run.analysis.Rd:28-30: Dropping empty section \references
prepare_Rd: run.asis.Rd:41-43: Dropping empty section \note
prepare_Rd: run.asis.Rd:35-37: Dropping empty section \references
prepare_Rd: runCensored.Rd:42-44: Dropping empty section \note
prepare_Rd: runCensored.Rd:36-38: Dropping empty section \references
prepare_Rd: runDiscrete.Rd:57-59: Dropping empty section \note
prepare_Rd: runDiscrete.Rd:51-53: Dropping empty section \references
prepare_Rd: runNonCensored.Rd:61-63: Dropping empty section \note
prepare_Rd: runNonCensored.Rd:55-57: Dropping empty section \references
prepare_Rd: scan.textout.Rd:35-37: Dropping empty section \note
prepare_Rd: scan.textout.Rd:29-31: Dropping empty section \references
prepare_Rd: scan.textout.Rd:41-43: Dropping empty section \seealso
prepare_Rd: scan.treesout.Rd:31-33: Dropping empty section \note
prepare_Rd: scan.treesout.Rd:25-27: Dropping empty section \references
prepare_Rd: scan.treesout.Rd:37-39: Dropping empty section \seealso
prepare_Rd: showBrownie.Rd:14-16: Dropping empty section \details
prepare_Rd: showBrownie.Rd:26-28: Dropping empty section \note
prepare_Rd: showBrownie.Rd:20-22: Dropping empty section \references
prepare_Rd: showBrownie.Rd:32-34: Dropping empty section \seealso
prepare_Rd: showBrownie.Rd:35-37: Dropping empty section \examples
prepare_Rd: showSubNodes.Rd:31-33: Dropping empty section \note
prepare_Rd: showSubNodes.Rd:25-27: Dropping empty section \references
prepare_Rd: showSubNodes.Rd:37-39: Dropping empty section \seealso
prepare_Rd: summaryCont.Rd:37-39: Dropping empty section \note
prepare_Rd: summaryCont.Rd:31-33: Dropping empty section \references
prepare_Rd: summaryCont.Rd:43-45: Dropping empty section \seealso
prepare_Rd: summaryDiscrete.Rd:14-16: Dropping empty section \details
prepare_Rd: summaryDiscrete.Rd:17-23: Dropping empty section \value
prepare_Rd: summaryDiscrete.Rd:30-32: Dropping empty section \note
prepare_Rd: summaryDiscrete.Rd:24-26: Dropping empty section \references
prepare_Rd: summaryDiscrete.Rd:36-38: Dropping empty section \seealso
prepare_Rd: summaryDiscrete.Rd:39-41: Dropping empty section \examples
prepare_Rd: summaryRatetest.Rd:37-39: Dropping empty section \note
prepare_Rd: summaryRatetest.Rd:31-33: Dropping empty section \references
prepare_Rd: summaryRatetest.Rd:43-45: Dropping empty section \seealso
prepare_Rd: taxData.Rd:14-16: Dropping empty section \details
prepare_Rd: taxData.Rd:17-23: Dropping empty section \value
prepare_Rd: taxData.Rd:30-32: Dropping empty section \note
prepare_Rd: taxData.Rd:24-26: Dropping empty section \references
prepare_Rd: taxData.Rd:36-38: Dropping empty section \seealso
prepare_Rd: taxData.Rd:39-41: Dropping empty section \examples
prepare_Rd: taxa.charvect.Rd:37-39: Dropping empty section \note
prepare_Rd: taxa.charvect.Rd:31-33: Dropping empty section \references
prepare_Rd: taxa.charvect.Rd:43-45: Dropping empty section \seealso
prepare_Rd: taxa.mono.Rd:22-24: Dropping empty section \details
prepare_Rd: taxa.mono.Rd:25-31: Dropping empty section \value
prepare_Rd: taxa.mono.Rd:38-40: Dropping empty section \note
prepare_Rd: taxa.mono.Rd:32-34: Dropping empty section \references
prepare_Rd: taxa.mono.Rd:44-46: Dropping empty section \seealso
prepare_Rd: taxa.mono.Rd:47-49: Dropping empty section \examples
prepare_Rd: taxaname.to.taxind.Rd:22-24: Dropping empty section \details
prepare_Rd: taxaname.to.taxind.Rd:25-31: Dropping empty section \value
prepare_Rd: taxaname.to.taxind.Rd:38-40: Dropping empty section \note
prepare_Rd: taxaname.to.taxind.Rd:32-34: Dropping empty section \references
prepare_Rd: taxaname.to.taxind.Rd:44-46: Dropping empty section \seealso
prepare_Rd: taxaname.to.taxind.Rd:47-49: Dropping empty section \examples
prepare_Rd: taxaset.names.Rd:19-21: Dropping empty section \details
prepare_Rd: taxaset.names.Rd:31-33: Dropping empty section \note
prepare_Rd: taxaset.names.Rd:25-27: Dropping empty section \references
prepare_Rd: taxaset.names.Rd:37-39: Dropping empty section \seealso
prepare_Rd: taxaset.rename.Rd:19-21: Dropping empty section \details
prepare_Rd: taxaset.rename.Rd:22-28: Dropping empty section \value
prepare_Rd: taxaset.rename.Rd:35-37: Dropping empty section \note
prepare_Rd: taxaset.rename.Rd:29-31: Dropping empty section \references
prepare_Rd: taxaset.rename.Rd:41-43: Dropping empty section \seealso
prepare_Rd: taxaset.rename.Rd:44-46: Dropping empty section \examples
prepare_Rd: taxind.to.dataind.Rd:22-24: Dropping empty section \details
prepare_Rd: taxind.to.dataind.Rd:34-36: Dropping empty section \note
prepare_Rd: taxind.to.dataind.Rd:28-30: Dropping empty section \references
prepare_Rd: taxind.to.dataind.Rd:40-42: Dropping empty section \seealso
prepare_Rd: taxind.to.dataind.Rd:43-45: Dropping empty section \examples
prepare_Rd: validPhylo4d_ext.Rd:19-21: Dropping empty section \details
prepare_Rd: validPhylo4d_ext.Rd:31-33: Dropping empty section \note
prepare_Rd: validPhylo4d_ext.Rd:25-27: Dropping empty section \references
prepare_Rd: validPhylo4d_ext.Rd:37-39: Dropping empty section \seealso
prepare_Rd: validPhylo4d_ext.Rd:40-42: Dropping empty section \examples
prepare_Rd: which.mono.Rd:34-36: Dropping empty section \note
prepare_Rd: which.mono.Rd:28-30: Dropping empty section \references
prepare_Rd: which.para.Rd:34-36: Dropping empty section \note
prepare_Rd: which.para.Rd:28-30: Dropping empty section \references
prepare_Rd: write.brownie.matrix.Rd:19-21: Dropping empty section \details
prepare_Rd: write.brownie.matrix.Rd:22-28: Dropping empty section \value
prepare_Rd: write.brownie.matrix.Rd:35-37: Dropping empty section \note
prepare_Rd: write.brownie.matrix.Rd:29-31: Dropping empty section \references
prepare_Rd: write.brownie.string.Rd:22-24: Dropping empty section \details
prepare_Rd: write.brownie.string.Rd:25-31: Dropping empty section \value
prepare_Rd: write.brownie.string.Rd:38-40: Dropping empty section \note
prepare_Rd: write.brownie.string.Rd:32-34: Dropping empty section \references
prepare_Rd: write.brownie.string.Rd:44-46: Dropping empty section \seealso
prepare_Rd: write.brownie.string.Rd:47-48: Dropping empty section \examples
prepare_Rd: write.brownie.vector.Rd:22-24: Dropping empty section \details
prepare_Rd: write.brownie.vector.Rd:34-36: Dropping empty section \note
prepare_Rd: write.brownie.vector.Rd:28-30: Dropping empty section \references
prepare_Rd: write.nexus.simmap.Rd:39-41: Dropping empty section \note
prepare_Rd: write.nexus.simmap.Rd:33-35: Dropping empty section \references
prepare_Rd: write.simmap.Rd:31-33: Dropping empty section \details
prepare_Rd: write.simmap.Rd:43-45: Dropping empty section \note
prepare_Rd: write.simmap.Rd:37-39: Dropping empty section \references
prepare_Rd: write.simmap.Rd:49-51: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
LIB: Generator type: mt19937
LIB: Seed = 1286487128
LIB: First value = 2769801812
RCPP: 'd:/temp/RtmpKepPlc/file6e287f57'
Piping commands to brownie objectLIB: preprocessing command: execute 'd:/temp/RtmpKepPlc/file6e287f57'
 .. conditioned command is: ;execute 'd:/temp/RtmpKepPlc/file6e287f57';end;
LIB: handle cmd ';execute 'd:/temp/RtmpKepPlc/file6e287f57';end;'
Opening d:/temp/RtmpKepPlc/file6e287f57...
Starting to execute NEXUS file
   Entering TAXA block...done
   Entering TREES block...done
   Entering CHARACTERS block...done
   (Skipping assumptions block)
   (Skipping brownie block)
Finished executing NEXUS file
TREES block contains 10 trees
	1	UNTITLED	(rooted, weight = 1)
	2	UNTITLED	(rooted, weight = 1)
	3	UNTITLED	(rooted, weight = 1)
	4	UNTITLED	(rooted, weight = 1)
	5	UNTITLED	(rooted, weight = 1)
	6	UNTITLED	(rooted, weight = 1)
	7	UNTITLED	(rooted, weight = 1)
	8	UNTITLED	(rooted, weight = 1)
	9	UNTITLED	(rooted, weight = 1)
	10	UNTITLED	(rooted, weight = 1,default tree)
Reading TAXA block...
Reading TREES block...
Reading CHARACTERS block...
Reading ASSUMPTIONS block...
Reading BROWNIE block...
You have chosen a single rate Brownian motion model
Now optimizing with taxset ALL
LIB: Generator type: mt19937
LIB: Seed = 1286487128
LIB: First value = 2769801812
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487129
LIB: First value = 2093468197
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487131
LIB: First value = 2898257524
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487132
LIB: First value = 492909034
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487134
LIB: First value = 2122275512
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487134
LIB: First value = 2122275512
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487136
LIB: First value = 2393251924
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487136
LIB: First value = 2393251924
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487138
LIB: First value = 3158536415
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487138
LIB: First value = 3158536415
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487140
LIB: First value = 3539071339
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487140
LIB: First value = 3539071339
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487142
LIB: First value = 3906462814
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487142
LIB: First value = 3906462814
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713829 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487144
LIB: First value = 2604953137
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713829 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666875 +/- 0.000044
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487145
LIB: First value = 1964068725
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713829 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666875 +/- 0.000044
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.00473 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487147
LIB: First value = 1278370939
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713829 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666875 +/- 0.000044
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.00473 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373273 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487148
LIB: First value = 772091705
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713829 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666875 +/- 0.000044
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.00473 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373273 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489959 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487149
LIB: First value = 3888012262
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713829 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666875 +/- 0.000044
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.00473 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373273 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489959 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582569
AIC = 209.165138
AICc = 209.552235
Ancestral state = -0.0
Optimal rate = 1120.318971 +/- 0.000072
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487149
LIB: First value = 3888012262
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175438 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077716 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442958 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968402 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373219 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646936 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471417 +/- 0.000088
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475627 +/- 0.000021
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943006 +/- 0.000029
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401555 +/- 0.000055
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533328 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175533 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713829 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666875 +/- 0.000044
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.00473 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373273 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489959 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582569
AIC = 209.165138
AICc = 209.552235
Ancestral state = -0.0
Optimal rate = 1120.318971 +/- 0.000072
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.819721
AICc = 189.206817
Ancestral state = -0.0
Optimal rate = 615.831896 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
You have chosen Brownian motion with one rate parameter per state
Now optimizing with taxset ALL
LIB: Generator type: mt19937
LIB: Seed = 1286487151
LIB: First value = 391603887
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 101.358522
AIC = 208.717044
AICc = 209.517044
Ancestral state = -0.568339 +/- 0.0
Rate in state 0 = 91.263037 +/- 0.000018
Rate in state 1 = 752.717415 +/- 0.000037
LIB: Generator type: mt19937
LIB: Seed = 1286487154
LIB: First value = 525977771
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 91.179842
AIC = 188.359685
AICc = 189.159685
Ancestral state = 2.750468 +/- 0.0
Rate in state 0 = 48.76797 +/- 0.000006
Rate in state 1 = 415.385118 +/- 0.000012
LIB: Generator type: mt19937
LIB: Seed = 1286487157
LIB: First value = 2435998540
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.241775
AIC = 204.483549
AICc = 205.283549
Ancestral state = -0.710483 +/- 0.0
Rate in state 0 = 21.346394 +/- 0.000002
Rate in state 1 = 671.65793 +/- 0.000013
LIB: Generator type: mt19937
LIB: Seed = 1286487160
LIB: First value = 1698419627
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.983502
AIC = 187.967004
AICc = 188.767004
Ancestral state = 3.054602 +/- 0.0
Rate in state 0 = 41.680788 +/- 0.000003
Rate in state 1 = 325.951758 +/- 0.000008
LIB: Generator type: mt19937
LIB: Seed = 1286487164
LIB: First value = 101401061
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 98.403443
AIC = 202.806887
AICc = 203.606887
Ancestral state = -0.712707 +/- 0.0
Rate in state 0 = 24.872615 +/- 0.000002
Rate in state 1 = 859.919457 +/- 0.000015
LIB: Generator type: mt19937
LIB: Seed = 1286487167
LIB: First value = 2480486380
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.568177
AIC = 187.136354
AICc = 187.936354
Ancestral state = 3.330917 +/- 0.0
Rate in state 0 = 47.885894 +/- 0.000005
Rate in state 1 = 424.639145 +/- 0.000012
LIB: Generator type: mt19937
LIB: Seed = 1286487170
LIB: First value = 871107531
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.25393
AIC = 204.507859
AICc = 205.307859
Ancestral state = -0.720946 +/- 0.0
Rate in state 0 = 89.787499 +/- 0.000004
Rate in state 1 = 2852.305354 +/- 0.000072
LIB: Generator type: mt19937
LIB: Seed = 1286487174
LIB: First value = 661196090
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.870567
AIC = 187.741134
AICc = 188.541134
Ancestral state = 3.365235 +/- 0.0
Rate in state 0 = 155.289329 +/- 0.000012
Rate in state 1 = 1406.59074 +/- 0.000028
LIB: Generator type: mt19937
LIB: Seed = 1286487177
LIB: First value = 2627911550
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 101.678334
AIC = 209.356668
AICc = 210.156668
Ancestral state = -0.438847 +/- 0.000001
Rate in state 0 = 94.164137 +/- 0.000013
Rate in state 1 = 462.965626 +/- 0.000014
LIB: Generator type: mt19937
LIB: Seed = 1286487180
LIB: First value = 1208426056
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.255611
AIC = 188.511222
AICc = 189.311222
Ancestral state = 1.827769 +/- 0.0
Rate in state 0 = 42.895606 +/- 0.000004
Rate in state 1 = 257.636686 +/- 0.000007
LIB: Generator type: mt19937
LIB: Seed = 1286487184
LIB: First value = 741301693
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 97.672424
AIC = 201.344848
AICc = 202.144848
Ancestral state = -0.718767 +/- 0.000029
Rate in state 0 = 52.492216 +/- 0.008123
Rate in state 1 = 2218.494697 +/- 0.955001
LIB: Generator type: mt19937
LIB: Seed = 1286487187
LIB: First value = 3513043143
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.78148
AIC = 187.56296
AICc = 188.36296
Ancestral state = 2.473751 +/- 0.0
Rate in state 0 = 174.301709 +/- 0.00001
Rate in state 1 = 991.120302 +/- 0.00002
LIB: Generator type: mt19937
LIB: Seed = 1286487191
LIB: First value = 1662369060
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.045956
AIC = 204.091912
AICc = 204.891912
Ancestral state = -0.73727 +/- 0.0
Rate in state 0 = 31.188348 +/- 0.000002
Rate in state 1 = 983.465009 +/- 0.000026
LIB: Generator type: mt19937
LIB: Seed = 1286487194
LIB: First value = 664958027
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.061771
AIC = 188.123541
AICc = 188.923541
Ancestral state = 2.421296 +/- 0.0
Rate in state 0 = 77.340197 +/- 0.000007
Rate in state 1 = 459.763732 +/- 0.000013
LIB: Generator type: mt19937
LIB: Seed = 1286487198
LIB: First value = 479145410
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 100.073359
AIC = 206.146717
AICc = 206.946717
Ancestral state = -0.664455 +/- 0.0
Rate in state 0 = 64.535104 +/- 0.000007
Rate in state 1 = 1320.170086 +/- 0.000038
LIB: Generator type: mt19937
LIB: Seed = 1286487201
LIB: First value = 1333925307
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.132001
AIC = 188.264002
AICc = 189.064002
Ancestral state = 2.905147 +/- 0.0
Rate in state 0 = 103.759448 +/- 0.000006
Rate in state 1 = 650.00416 +/- 0.000007
LIB: Generator type: mt19937
LIB: Seed = 1286487204
LIB: First value = 602732986
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.299029
AIC = 204.598057
AICc = 205.398057
Ancestral state = -0.68127 +/- 0.0
Rate in state 0 = 28.801417 +/- 0.000002
Rate in state 1 = 884.378965 +/- 0.000021
LIB: Generator type: mt19937
LIB: Seed = 1286487208
LIB: First value = 2519515352
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.987651
AIC = 187.975303
AICc = 188.775303
Ancestral state = 3.017591 +/- 0.0
Rate in state 0 = 56.273547 +/- 0.000005
Rate in state 1 = 429.108608 +/- 0.000013
LIB: Generator type: mt19937
LIB: Seed = 1286487211
LIB: First value = 1762817921
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.397679
AIC = 204.795357
AICc = 205.595357
Ancestral state = -0.684374 +/- 0.0
Rate in state 0 = 59.014826 +/- 0.000004
Rate in state 1 = 1843.943324 +/- 0.00004
LIB: Generator type: mt19937
LIB: Seed = 1286487215
LIB: First value = 2961151530
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.660259
AIC = 187.320518
AICc = 188.120518
Ancestral state = 3.750793 +/- 0.0
Rate in state 0 = 87.830936 +/- 0.000006
Rate in state 1 = 918.874976 +/- 0.000019
LIB: Generator type: mt19937
LIB: Seed = 1286487219
LIB: First value = 1153973098
RCPP: 'd:/temp/RtmpKepPlc/file6b8d5dec'
Piping commands to brownie objectLIB: preprocessing command: execute 'd:/temp/RtmpKepPlc/file6b8d5dec'
 .. conditioned command is: ;execute 'd:/temp/RtmpKepPlc/file6b8d5dec';end;
LIB: handle cmd ';execute 'd:/temp/RtmpKepPlc/file6b8d5dec';end;'
Opening d:/temp/RtmpKepPlc/file6b8d5dec...
Starting to execute NEXUS file
   Entering TAXA block...done
   Entering TREES block...done
   Entering CHARACTERS block...done
   (Skipping assumptions block)
   (Skipping brownie block)
Finished executing NEXUS file
TREES block contains 10 trees
	1	UNTITLED	(rooted, weight = 1)
	2	UNTITLED	(rooted, weight = 1)
	3	UNTITLED	(rooted, weight = 1)
	4	UNTITLED	(rooted, weight = 1)
	5	UNTITLED	(rooted, weight = 1)
	6	UNTITLED	(rooted, weight = 1)
	7	UNTITLED	(rooted, weight = 1)
	8	UNTITLED	(rooted, weight = 1)
	9	UNTITLED	(rooted, weight = 1)
	10	UNTITLED	(rooted, weight = 1,default tree)
Reading TAXA block...
Reading TREES block...
Reading CHARACTERS block...
Reading ASSUMPTIONS block...
Reading BROWNIE block...
You have chosen a single rate Brownian motion model
Now optimizing with taxset ALL
LIB: Generator type: mt19937
LIB: Seed = 1286487220
LIB: First value = 3559644205
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487220
LIB: First value = 3559644205
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487221
LIB: First value = 1630720401
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487222
LIB: First value = 2430009165
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487222
LIB: First value = 2430009165
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487223
LIB: First value = 291065979
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487224
LIB: First value = 3488565153
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487225
LIB: First value = 1948759568
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487226
LIB: First value = 1983089456
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487227
LIB: First value = 24762104
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487229
LIB: First value = 2286700536
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487229
LIB: First value = 2286700536
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487231
LIB: First value = 2790861399
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487231
LIB: First value = 2790861399
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713836 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487233
LIB: First value = 3472802623
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713836 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666895 +/- 0.000046
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487234
LIB: First value = 1803577711
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713836 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666895 +/- 0.000046
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004743 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487235
LIB: First value = 4216508592
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713836 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666895 +/- 0.000046
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004743 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373267 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487235
LIB: First value = 4216508592
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713836 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666895 +/- 0.000046
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004743 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373267 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489959 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487237
LIB: First value = 2283244456
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713836 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666895 +/- 0.000046
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004743 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373267 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489959 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582569
AIC = 209.165138
AICc = 209.552235
Ancestral state = -0.0
Optimal rate = 1120.318874 +/- 0.000058
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487237
LIB: First value = 2283244456
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175448 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077722 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442937 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968403 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373266 +/- 0.000025
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646939 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471382 +/- 0.000089
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475624 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.943016 +/- 0.000016
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.156415 +/- 0.000003
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.401545 +/- 0.000061
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533308 +/- 0.000013
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.17555 +/- 0.000035
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713836 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666895 +/- 0.000046
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004743 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373267 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489959 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582569
AIC = 209.165138
AICc = 209.552235
Ancestral state = -0.0
Optimal rate = 1120.318874 +/- 0.000058
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.819721
AICc = 189.206817
Ancestral state = -0.0
Optimal rate = 615.831895 +/- 0.00001
Note that +/- reflects imprecision due to numerical optimization
You have chosen Brownian motion with one rate parameter per state
Now optimizing with taxset ALL
LIB: Generator type: mt19937
LIB: Seed = 1286487239
LIB: First value = 2853384540
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 101.358522
AIC = 208.717044
AICc = 209.517044
Ancestral state = -0.568339 +/- 0.0
Rate in state 0 = 91.263064 +/- 0.000019
Rate in state 1 = 752.717426 +/- 0.000033
LIB: Generator type: mt19937
LIB: Seed = 1286487241
LIB: First value = 270985127
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 91.179842
AIC = 188.359685
AICc = 189.159685
Ancestral state = 2.750468 +/- 0.0
Rate in state 0 = 48.767956 +/- 0.000007
Rate in state 1 = 415.385145 +/- 0.000015
LIB: Generator type: mt19937
LIB: Seed = 1286487245
LIB: First value = 1981881010
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.241775
AIC = 204.483549
AICc = 205.283549
Ancestral state = -0.710483 +/- 0.0
Rate in state 0 = 21.346394 +/- 0.000002
Rate in state 1 = 671.65794 +/- 0.000016
LIB: Generator type: mt19937
LIB: Seed = 1286487248
LIB: First value = 2764854426
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.983502
AIC = 187.967004
AICc = 188.767004
Ancestral state = 3.054602 +/- 0.0
Rate in state 0 = 41.680786 +/- 0.000004
Rate in state 1 = 325.951763 +/- 0.000006
LIB: Generator type: mt19937
LIB: Seed = 1286487252
LIB: First value = 3054406886
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 98.403443
AIC = 202.806887
AICc = 203.606887
Ancestral state = -0.712707 +/- 0.0
Rate in state 0 = 24.872615 +/- 0.000001
Rate in state 1 = 859.919465 +/- 0.000029
LIB: Generator type: mt19937
LIB: Seed = 1286487255
LIB: First value = 836648993
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.568177
AIC = 187.136354
AICc = 187.936354
Ancestral state = 3.330917 +/- 0.0
Rate in state 0 = 47.885895 +/- 0.000003
Rate in state 1 = 424.639153 +/- 0.000012
LIB: Generator type: mt19937
LIB: Seed = 1286487258
LIB: First value = 3382919851
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.25393
AIC = 204.507859
AICc = 205.307859
Ancestral state = -0.720947 +/- 0.0
Rate in state 0 = 89.787492 +/- 0.000009
Rate in state 1 = 2852.305431 +/- 0.000106
LIB: Generator type: mt19937
LIB: Seed = 1286487262
LIB: First value = 1006100803
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.870567
AIC = 187.741134
AICc = 188.541134
Ancestral state = 3.365235 +/- 0.0
Rate in state 0 = 155.289308 +/- 0.000012
Rate in state 1 = 1406.590772 +/- 0.000024
LIB: Generator type: mt19937
LIB: Seed = 1286487266
LIB: First value = 1901612804
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 101.678334
AIC = 209.356668
AICc = 210.156668
Ancestral state = -0.438847 +/- 0.0
Rate in state 0 = 94.164135 +/- 0.000014
Rate in state 1 = 462.965657 +/- 0.000019
LIB: Generator type: mt19937
LIB: Seed = 1286487268
LIB: First value = 3621144964
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.255611
AIC = 188.511222
AICc = 189.311222
Ancestral state = 1.82777 +/- 0.0
Rate in state 0 = 42.895606 +/- 0.000004
Rate in state 1 = 257.636683 +/- 0.000006
LIB: Generator type: mt19937
LIB: Seed = 1286487272
LIB: First value = 2355174910
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 97.672424
AIC = 201.344848
AICc = 202.144848
Ancestral state = -0.718767 +/- 0.0
Rate in state 0 = 52.49222 +/- 0.000003
Rate in state 1 = 2218.494648 +/- 0.00004
LIB: Generator type: mt19937
LIB: Seed = 1286487275
LIB: First value = 4048468990
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.78148
AIC = 187.56296
AICc = 188.36296
Ancestral state = 2.473751 +/- 0.0
Rate in state 0 = 174.301687 +/- 0.00001
Rate in state 1 = 991.120294 +/- 0.000028
LIB: Generator type: mt19937
LIB: Seed = 1286487278
LIB: First value = 916408279
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.045956
AIC = 204.091912
AICc = 204.891912
Ancestral state = -0.73727 +/- 0.0
Rate in state 0 = 31.188347 +/- 0.000002
Rate in state 1 = 983.464971 +/- 0.00003
LIB: Generator type: mt19937
LIB: Seed = 1286487281
LIB: First value = 1057342541
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.061771
AIC = 188.123541
AICc = 188.923541
Ancestral state = 2.421296 +/- 0.0
Rate in state 0 = 77.3402 +/- 0.000007
Rate in state 1 = 459.763733 +/- 0.00001
LIB: Generator type: mt19937
LIB: Seed = 1286487285
LIB: First value = 370979922
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 100.073359
AIC = 206.146717
AICc = 206.946717
Ancestral state = -0.664456 +/- 0.0
Rate in state 0 = 64.535097 +/- 0.000007
Rate in state 1 = 1320.170059 +/- 0.000026
LIB: Generator type: mt19937
LIB: Seed = 1286487288
LIB: First value = 2428036403
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.132001
AIC = 188.264002
AICc = 189.064002
Ancestral state = 2.905147 +/- 0.0
Rate in state 0 = 103.759462 +/- 0.000011
Rate in state 1 = 650.004157 +/- 0.000019
LIB: Generator type: mt19937
LIB: Seed = 1286487292
LIB: First value = 73067654
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.299029
AIC = 204.598057
AICc = 205.398057
Ancestral state = -0.68127 +/- 0.0
Rate in state 0 = 28.80142 +/- 0.000002
Rate in state 1 = 884.37896 +/- 0.000018
LIB: Generator type: mt19937
LIB: Seed = 1286487295
LIB: First value = 1561203742
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.987651
AIC = 187.975303
AICc = 188.775303
Ancestral state = 3.017591 +/- 0.0
Rate in state 0 = 56.273548 +/- 0.000003
Rate in state 1 = 429.108598 +/- 0.00001
LIB: Generator type: mt19937
LIB: Seed = 1286487298
LIB: First value = 4229288612
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.397679
AIC = 204.795357
AICc = 205.595357
Ancestral state = -0.684374 +/- 0.0
Rate in state 0 = 59.014827 +/- 0.000004
Rate in state 1 = 1843.943312 +/- 0.000041
LIB: Generator type: mt19937
LIB: Seed = 1286487301
LIB: First value = 957054327
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.660259
AIC = 187.320518
AICc = 188.120518
Ancestral state = 3.750794 +/- 0.0
Rate in state 0 = 87.830931 +/- 0.000004
Rate in state 1 = 918.875014 +/- 0.000016
LIB: Generator type: mt19937
LIB: Seed = 1286487306
LIB: First value = 631713570
RCPP: 'd:/temp/RtmpKepPlc/file35f23830'
Piping commands to brownie objectLIB: preprocessing command: execute 'd:/temp/RtmpKepPlc/file35f23830'
 .. conditioned command is: ;execute 'd:/temp/RtmpKepPlc/file35f23830';end;
LIB: handle cmd ';execute 'd:/temp/RtmpKepPlc/file35f23830';end;'
Opening d:/temp/RtmpKepPlc/file35f23830...
Starting to execute NEXUS file
   Entering TAXA block...done
   Entering TREES block...done
   Entering CHARACTERS block...done
   (Skipping assumptions block)
   (Skipping brownie block)
Finished executing NEXUS file
TREES block contains 10 trees
	1	UNTITLED	(rooted, weight = 1)
	2	UNTITLED	(rooted, weight = 1)
	3	UNTITLED	(rooted, weight = 1)
	4	UNTITLED	(rooted, weight = 1)
	5	UNTITLED	(rooted, weight = 1)
	6	UNTITLED	(rooted, weight = 1)
	7	UNTITLED	(rooted, weight = 1)
	8	UNTITLED	(rooted, weight = 1)
	9	UNTITLED	(rooted, weight = 1)
	10	UNTITLED	(rooted, weight = 1,default tree)
Reading TAXA block...
Reading TREES block...
Reading CHARACTERS block...
Reading ASSUMPTIONS block...
Reading BROWNIE block...
You have chosen a single rate Brownian motion model
Now optimizing with taxset ALL
LIB: Generator type: mt19937
LIB: Seed = 1286487306
LIB: First value = 631713570
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487307
LIB: First value = 3211283407
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487309
LIB: First value = 2118720845
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487309
LIB: First value = 2118720845
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487310
LIB: First value = 279963419
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487311
LIB: First value = 178449484
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487312
LIB: First value = 994733654
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487312
LIB: First value = 994733654
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487314
LIB: First value = 1584082768
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487314
LIB: First value = 1584082768
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487316
LIB: First value = 1454411402
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487317
LIB: First value = 3023556847
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487319
LIB: First value = 1799870894
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487320
LIB: First value = 2297834575
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713845 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487321
LIB: First value = 1846496157
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713845 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666863 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487322
LIB: First value = 1343926227
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713845 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666863 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004721 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487324
LIB: First value = 4200912890
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713845 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666863 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004721 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373287 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487325
LIB: First value = 447945683
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713845 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666863 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004721 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373287 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489954 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487325
LIB: First value = 447945683
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713845 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666863 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004721 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373287 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489954 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582569
AIC = 209.165138
AICc = 209.552235
Ancestral state = -0.0
Optimal rate = 1120.318847 +/- 0.000071
Note that +/- reflects imprecision due to numerical optimization
LIB: Generator type: mt19937
LIB: Seed = 1286487326
LIB: First value = 709606125
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Now optimizing with taxset ALL
-lnL = 102.58253
AIC = 209.165059
AICc = 209.552156
Ancestral state = 0.0
Optimal rate = 553.175442 +/- 0.000028
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409867
AIC = 188.819734
AICc = 189.206831
Ancestral state = 0.0
Optimal rate = 304.077714 +/- 0.000004
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.58259
AIC = 209.165181
AICc = 209.552277
Ancestral state = -0.0
Optimal rate = 407.442938 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.81972
AICc = 189.206817
Ancestral state = 0.0
Optimal rate = 223.968408 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582641
AIC = 209.165282
AICc = 209.552379
Ancestral state = -0.0
Optimal rate = 512.373254 +/- 0.000024
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409857
AIC = 188.819714
AICc = 189.206811
Ancestral state = 0.0
Optimal rate = 281.646947 +/- 0.000007
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582653
AIC = 209.165305
AICc = 209.552402
Ancestral state = -0.0
Optimal rate = 1725.471351 +/- 0.000081
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409862
AIC = 188.819725
AICc = 189.206822
Ancestral state = 0.0
Optimal rate = 948.475623 +/- 0.000022
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582565
AIC = 209.16513
AICc = 209.552227
Ancestral state = -0.0
Optimal rate = 365.942981 +/- 0.000027
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409854
AIC = 188.819707
AICc = 189.206804
Ancestral state = -0.0
Optimal rate = 201.15642 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582495
AIC = 209.164991
AICc = 209.552087
Ancestral state = 0.0
Optimal rate = 1274.4015 +/- 0.000084
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409865
AIC = 188.819729
AICc = 189.206826
Ancestral state = 0.0
Optimal rate = 700.533323 +/- 0.000011
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582564
AIC = 209.165128
AICc = 209.552224
Ancestral state = -0.0
Optimal rate = 596.175542 +/- 0.00002
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409859
AIC = 188.819718
AICc = 189.206814
Ancestral state = 0.0
Optimal rate = 327.713845 +/- 0.000006
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582526
AIC = 209.165052
AICc = 209.552149
Ancestral state = -0.0
Optimal rate = 858.666863 +/- 0.000033
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409861
AIC = 188.819722
AICc = 189.206819
Ancestral state = 0.0
Optimal rate = 472.004721 +/- 0.000008
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582562
AIC = 209.165124
AICc = 209.552221
Ancestral state = 0.0
Optimal rate = 539.373287 +/- 0.000026
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.409855
AIC = 188.81971
AICc = 189.206807
Ancestral state = 0.0
Optimal rate = 296.489954 +/- 0.000005
Note that +/- reflects imprecision due to numerical optimization
-lnL = 102.582569
AIC = 209.165138
AICc = 209.552235
Ancestral state = -0.0
Optimal rate = 1120.318847 +/- 0.000071
Note that +/- reflects imprecision due to numerical optimization
-lnL = 92.40986
AIC = 188.819721
AICc = 189.206817
Ancestral state = -0.0
Optimal rate = 615.831888 +/- 0.000014
Note that +/- reflects imprecision due to numerical optimization
You have chosen Brownian motion with one rate parameter per state
Now optimizing with taxset ALL
LIB: Generator type: mt19937
LIB: Seed = 1286487328
LIB: First value = 1095535378
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 101.358522
AIC = 208.717044
AICc = 209.517044
Ancestral state = -0.568339 +/- 0.0
Rate in state 0 = 91.263034 +/- 0.000013
Rate in state 1 = 752.717405 +/- 0.00002
LIB: Generator type: mt19937
LIB: Seed = 1286487330
LIB: First value = 1891043858
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 91.179842
AIC = 188.359685
AICc = 189.159685
Ancestral state = 2.750468 +/- 0.0
Rate in state 0 = 48.767965 +/- 0.000006
Rate in state 1 = 415.38513 +/- 0.00001
LIB: Generator type: mt19937
LIB: Seed = 1286487334
LIB: First value = 4099943101
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.241775
AIC = 204.483549
AICc = 205.283549
Ancestral state = -0.710483 +/- 0.0
Rate in state 0 = 21.346397 +/- 0.000002
Rate in state 1 = 671.657899 +/- 0.000019
LIB: Generator type: mt19937
LIB: Seed = 1286487336
LIB: First value = 186538314
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.983502
AIC = 187.967004
AICc = 188.767004
Ancestral state = 3.054602 +/- 0.0
Rate in state 0 = 41.680786 +/- 0.000003
Rate in state 1 = 325.951767 +/- 0.000007
LIB: Generator type: mt19937
LIB: Seed = 1286487340
LIB: First value = 2950125128
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 98.403443
AIC = 202.806887
AICc = 203.606887
Ancestral state = -0.712707 +/- 0.0
Rate in state 0 = 24.872613 +/- 0.000002
Rate in state 1 = 859.919508 +/- 0.000011
LIB: Generator type: mt19937
LIB: Seed = 1286487343
LIB: First value = 2835164720
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.568177
AIC = 187.136354
AICc = 187.936354
Ancestral state = 3.330917 +/- 0.0
Rate in state 0 = 47.88589 +/- 0.000004
Rate in state 1 = 424.639158 +/- 0.000018
LIB: Generator type: mt19937
LIB: Seed = 1286487347
LIB: First value = 2945326486
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.25393
AIC = 204.507859
AICc = 205.307859
Ancestral state = -0.720946 +/- 0.0
Rate in state 0 = 89.787494 +/- 0.000008
Rate in state 1 = 2852.305282 +/- 0.000099
LIB: Generator type: mt19937
LIB: Seed = 1286487350
LIB: First value = 195455946
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.870567
AIC = 187.741134
AICc = 188.541134
Ancestral state = 3.365235 +/- 0.0
Rate in state 0 = 155.289315 +/- 0.000021
Rate in state 1 = 1406.590746 +/- 0.000041
LIB: Generator type: mt19937
LIB: Seed = 1286487354
LIB: First value = 2103188378
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 101.678334
AIC = 209.356668
AICc = 210.156668
Ancestral state = -0.438847 +/- 0.000001
Rate in state 0 = 94.164127 +/- 0.000016
Rate in state 1 = 462.96563 +/- 0.00002
LIB: Generator type: mt19937
LIB: Seed = 1286487356
LIB: First value = 452668741
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.255611
AIC = 188.511222
AICc = 189.311222
Ancestral state = 1.827769 +/- 0.0
Rate in state 0 = 42.895606 +/- 0.000005
Rate in state 1 = 257.636691 +/- 0.000006
LIB: Generator type: mt19937
LIB: Seed = 1286487360
LIB: First value = 1729499304
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 97.672424
AIC = 201.344848
AICc = 202.144848
Ancestral state = -0.718767 +/- 0.0
Rate in state 0 = 52.492218 +/- 0.000003
Rate in state 1 = 2218.494618 +/- 0.000058
LIB: Generator type: mt19937
LIB: Seed = 1286487363
LIB: First value = 3125215206
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.78148
AIC = 187.56296
AICc = 188.36296
Ancestral state = 2.473751 +/- 0.0
Rate in state 0 = 174.301699 +/- 0.000011
Rate in state 1 = 991.120297 +/- 0.000026
LIB: Generator type: mt19937
LIB: Seed = 1286487367
LIB: First value = 4173956123
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.045956
AIC = 204.091912
AICc = 204.891912
Ancestral state = -0.73727 +/- 0.0
Rate in state 0 = 31.188345 +/- 0.000002
Rate in state 1 = 983.464978 +/- 0.000024
LIB: Generator type: mt19937
LIB: Seed = 1286487370
LIB: First value = 1865687058
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.061771
AIC = 188.123541
AICc = 188.923541
Ancestral state = 2.421296 +/- 0.0
Rate in state 0 = 77.340203 +/- 0.000007
Rate in state 1 = 459.763722 +/- 0.000015
LIB: Generator type: mt19937
LIB: Seed = 1286487373
LIB: First value = 3303477095
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 100.073359
AIC = 206.146717
AICc = 206.946717
Ancestral state = -0.664456 +/- 0.0
Rate in state 0 = 64.535102 +/- 0.000005
Rate in state 1 = 1320.170049 +/- 0.000029
LIB: Generator type: mt19937
LIB: Seed = 1286487377
LIB: First value = 2890137843
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 91.132001
AIC = 188.264002
AICc = 189.064002
Ancestral state = 2.905147 +/- 0.0
Rate in state 0 = 103.759439 +/- 0.00001
Rate in state 1 = 650.004156 +/- 0.000014
LIB: Generator type: mt19937
LIB: Seed = 1286487380
LIB: First value = 3528391069
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.299029
AIC = 204.598057
AICc = 205.398057
Ancestral state = -0.68127 +/- 0.0
Rate in state 0 = 28.801421 +/- 0.000003
Rate in state 1 = 884.378976 +/- 0.000028
LIB: Generator type: mt19937
LIB: Seed = 1286487384
LIB: First value = 1117075481
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.987651
AIC = 187.975303
AICc = 188.775303
Ancestral state = 3.017591 +/- 0.0
Rate in state 0 = 56.273549 +/- 0.000005
Rate in state 1 = 429.108602 +/- 0.000013
LIB: Generator type: mt19937
LIB: Seed = 1286487387
LIB: First value = 2989774305
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
-lnL = 99.397679
AIC = 204.795357
AICc = 205.595357
Ancestral state = -0.684374 +/- 0.0
Rate in state 0 = 59.014822 +/- 0.000004
Rate in state 1 = 1843.943327 +/- 0.000045
LIB: Generator type: mt19937
LIB: Seed = 1286487391
LIB: First value = 3583880191
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
----------------------------------------------------------------------------
 WARNING: Out of 15 optimization starts, 15 were stopped by hitting
  the maximum # of iterations. This means that those replicates
  may not even have hit the local maximum.
  You can increase the maximum number of iterations or decrease the
  precision with the NumOpt command. You could also consider
  increasing the number of random starts using that same command.
  If this happened on a small proportion of replicates, though,
  or if the precision (below) is good enough, don't worry about it.
----------------------------------------------------------------------------
-lnL = 90.660259
AIC = 187.320518
AICc = 188.120518
Ancestral state = 3.750794 +/- 0.0
Rate in state 0 = 87.83094 +/- 0.000006
Rate in state 1 = 918.875001 +/- 0.00002
LIB: Generator type: mt19937
LIB: Seed = 1286487395
LIB: First value = 2338861376
RCPP: 'd:/temp/RtmpKepPlc/file109c188d'
Piping commands to brownie objectLIB: preprocessing command: execute 'd:/temp/RtmpKepPlc/file109c188d'
 .. conditioned command is: ;execute 'd:/temp/RtmpKepPlc/file109c188d';end;
LIB: handle cmd ';execute 'd:/temp/RtmpKepPlc/file109c188d';end;'
Opening d:/temp/RtmpKepPlc/file109c188d...
Starting to execute NEXUS file
   Entering TAXA block...done
   Entering TREES block...done
   Entering CHARACTERS block...done
   (Skipping brownie block)
Finished executing NEXUS file
TREES block contains one tree
	1	UNTITLED	(rooted, weight = 1,default tree)
Reading TAXA block...
Reading TREES block...
Reading CHARACTERS block...
Reading BROWNIE block...
You have chosen a non-time-reversible model: rates are free to vary
You have chosen equal frequencies for all states
WARNING: if some characters have fewer than 2 character states, the output in the output table will be wrong for those chars
-------------------------------------------------------------------------------
 WARNING: You are trying to estimate 2 parameters, but only have 13 taxa.
 Make sure to try some simpler models, and expect quite imprecise estimates.
-------------------------------------------------------------------------------
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Tree = 1: UNTITLED
  -lnL =       6.043574
  AIC  =      16.087148
  AICc =      17.287148
  Rates: nonreversible
    q_0_1 = 1.652106 +/- 0.0
    q_1_0 = 6.252674 +/- 0.0
  Statefreqs: uniform
    P(0) = 0.5
    P(1) = 0.5
tree input1 = (((((((((fuliginosa[&S 1:0.055]:0.055,fortis[&S 1:0.055]:0.055)'[&S 0:0.0275,1:0.0275]':0.055,magnirostris[&S 0:0.11]:0.11)'[&S 0:0.07333]':0.07333,conirostris[&S 0:0.18333]:0.18333)'[&S 0:0.00917]':0.00917,scandens[&S 0:0.1925]:0.1925)'[&S 0:0.0355]':0.0355,difficilis[&S 0:0.114,1:0.114]:0.228)'[&S 0:0.10346]':0.10346,(pallida[&S 0:0.08667]:0.08667,((parvulus[&S 0:0.02]:0.02,psittacula[&S 0:0.02]:0.02)'[&S 0:0.015]':0.015,pauper[&S 0:0.035]:0.035)'[&S 0:0.05167]':0.05167)'[&S 0:0.24479]':0.24479)'[&S 0:0.13404]':0.13404,Platyspiza[&S 0:0.4655]:0.4655)'[&S 0:0.06859]':0.06859,fusca[&S 0:0.53409]:0.53409)'[&S 0:0.04924]':0.04924,Pinaroloxias[&S 0:0.58333]:0.58333);
tree input1 = (((((((((fuliginosa:{1,0.055},fortis:{1,0.055})':{0,0.0275:1,0.0275}',magnirostris:{0,0.11})':{0,0.07333}',conirostris:{0,0.18333})':{0,0.00917}',scandens:{0,0.1925})':{0,0.0355}',difficilis:{0,0.114:1,0.114})':{0,0.10346}',(pallida:{0,0.08667},((parvulus:{0,0.02},psittacula:{0,0.02})':{0,0.015}',pauper:{0,0.035})':{0,0.05167}')':{0,0.24479}')':{0,0.13404}',Platyspiza:{0,0.4655})':{0,0.06859}',fusca:{0,0.53409})':{0,0.04924}',Pinaroloxias:{0,0.58333});
           ÚÄ fuliginosa:{1,0.055}
          Ú´:{0,0.0275:1,0.0275}
          ³ÀÄ fortis:{1,0.055}
         Ú´:{0,0.07333}
         ³ÀÄÄ magnirostris:{0,0.11}
        Ú´:{0,0.00917}
        ³ÀÄÄÄ conirostris:{0,0.18333}
       Ú´:{0,0.0355}
       ³ÀÄÄÄÄ scandens:{0,0.1925}
   ÚÄÄÄ´:{0,0.10346}
   ³   ÀÄÄÄÄÄ difficilis:{0,0.114:1,0.114}
  Ú´:{0,0.13404}
  ³³     ÚÄÄÄ pallida:{0,0.08667}
  ³ÀÄÄÄÄÄ´:{0,0.24479}
  ³      ³ ÚÄ parvulus:{0,0.02}
  ³      ³Ú´:{0,0.015}
  ³      ³³ÀÄ psittacula:{0,0.02}
  ³      À´:{0,0.05167}
  ³       ÀÄÄ pauper:{0,0.035}
 Ú´:{0,0.06859}
 ³ÀÄÄÄÄÄÄÄÄÄÄ Platyspiza:{0,0.4655}
Ú´:{0,0.04924}
³ÀÄÄÄÄÄÄÄÄÄÄÄ fusca:{0,0.53409}
´
ÀÄÄÄÄÄÄÄÄÄÄÄÄ Pinaroloxias:{0,0.58333}
You have chosen a non-time-reversible model: rates are free to vary
You have chosen to use equilibrium state frequencies
WARNING: if some characters have fewer than 2 character states, the output in the output table will be wrong for those chars
-------------------------------------------------------------------------------
 WARNING: You are trying to estimate 2 parameters, but only have 13 taxa.
 Make sure to try some simpler models, and expect quite imprecise estimates.
-------------------------------------------------------------------------------
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Tree = 1: UNTITLED
  -lnL =       6.042915
  AIC  =      16.085830
  AICc =      17.285830
  Rates: nonreversible
    q_0_1 = 1.661837 +/- 0.000001
    q_1_0 = 6.181369 +/- 0.000002
  Statefreqs: equilibrium
    P(0) = 0.788118
    P(1) = 0.211882
tree input1 = (((((((((fuliginosa[&S 1:0.055]:0.055,fortis[&S 1:0.055]:0.055)'[&S 0:0.0275,1:0.0275]':0.055,magnirostris[&S 0:0.11]:0.11)'[&S 0:0.07333]':0.07333,conirostris[&S 0:0.18333]:0.18333)'[&S 0:0.00917]':0.00917,scandens[&S 0:0.1925]:0.1925)'[&S 0:0.0355]':0.0355,difficilis[&S 0:0.114,1:0.114]:0.228)'[&S 0:0.10346]':0.10346,(pallida[&S 0:0.08667]:0.08667,((parvulus[&S 0:0.02]:0.02,psittacula[&S 0:0.02]:0.02)'[&S 0:0.015]':0.015,pauper[&S 0:0.035]:0.035)'[&S 0:0.05167]':0.05167)'[&S 0:0.24479]':0.24479)'[&S 0:0.13404]':0.13404,Platyspiza[&S 0:0.4655]:0.4655)'[&S 0:0.06859]':0.06859,fusca[&S 0:0.53409]:0.53409)'[&S 0:0.04924]':0.04924,Pinaroloxias[&S 0:0.58333]:0.58333);
tree input1 = (((((((((fuliginosa:{1,0.055},fortis:{1,0.055})':{0,0.0275:1,0.0275}',magnirostris:{0,0.11})':{0,0.07333}',conirostris:{0,0.18333})':{0,0.00917}',scandens:{0,0.1925})':{0,0.0355}',difficilis:{0,0.114:1,0.114})':{0,0.10346}',(pallida:{0,0.08667},((parvulus:{0,0.02},psittacula:{0,0.02})':{0,0.015}',pauper:{0,0.035})':{0,0.05167}')':{0,0.24479}')':{0,0.13404}',Platyspiza:{0,0.4655})':{0,0.06859}',fusca:{0,0.53409})':{0,0.04924}',Pinaroloxias:{0,0.58333});
           ÚÄ fuliginosa:{1,0.055}
          Ú´:{0,0.0275:1,0.0275}
          ³ÀÄ fortis:{1,0.055}
         Ú´:{0,0.07333}
         ³ÀÄÄ magnirostris:{0,0.11}
        Ú´:{0,0.00917}
        ³ÀÄÄÄ conirostris:{0,0.18333}
       Ú´:{0,0.0355}
       ³ÀÄÄÄÄ scandens:{0,0.1925}
   ÚÄÄÄ´:{0,0.10346}
   ³   ÀÄÄÄÄÄ difficilis:{0,0.114:1,0.114}
  Ú´:{0,0.13404}
  ³³     ÚÄÄÄ pallida:{0,0.08667}
  ³ÀÄÄÄÄÄ´:{0,0.24479}
  ³      ³ ÚÄ parvulus:{0,0.02}
  ³      ³Ú´:{0,0.015}
  ³      ³³ÀÄ psittacula:{0,0.02}
  ³      À´:{0,0.05167}
  ³       ÀÄÄ pauper:{0,0.035}
 Ú´:{0,0.06859}
 ³ÀÄÄÄÄÄÄÄÄÄÄ Platyspiza:{0,0.4655}
Ú´:{0,0.04924}
³ÀÄÄÄÄÄÄÄÄÄÄÄ fusca:{0,0.53409}
´
ÀÄÄÄÄÄÄÄÄÄÄÄÄ Pinaroloxias:{0,0.58333}
LIB: Generator type: mt19937
LIB: Seed = 1286487398
LIB: First value = 1937589730
RCPP: 'd:/temp/RtmpKepPlc/file61ce669a'
Piping commands to brownie objectLIB: preprocessing command: execute 'd:/temp/RtmpKepPlc/file61ce669a'
 .. conditioned command is: ;execute 'd:/temp/RtmpKepPlc/file61ce669a';end;
LIB: handle cmd ';execute 'd:/temp/RtmpKepPlc/file61ce669a';end;'
Opening d:/temp/RtmpKepPlc/file61ce669a...
Starting to execute NEXUS file
   Entering TAXA block...done
   Entering TREES block...done
   Entering CHARACTERS block...done
   (Skipping brownie block)
Finished executing NEXUS file
TREES block contains one tree
	1	UNTITLED	(rooted, weight = 1,default tree)
Reading TAXA block...
Reading TREES block...
Reading CHARACTERS block...
Reading BROWNIE block...
You have chosen a non-time-reversible model: rates are free to vary
You have chosen equal frequencies for all states
WARNING: if some characters have fewer than 2 character states, the output in the output table will be wrong for those chars
-------------------------------------------------------------------------------
 WARNING: You are trying to estimate 2 parameters, but only have 13 taxa.
 Make sure to try some simpler models, and expect quite imprecise estimates.
-------------------------------------------------------------------------------
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Tree = 1: UNTITLED
  -lnL =       6.043574
  AIC  =      16.087148
  AICc =      17.287148
  Rates: nonreversible
    q_0_1 = 1.652106 +/- 0.0
    q_1_0 = 6.252674 +/- 0.0
  Statefreqs: uniform
    P(0) = 0.5
    P(1) = 0.5
tree input1 = (((((((((fuliginosa[&S 1:0.055]:0.055,fortis[&S 1:0.055]:0.055)'[&S 0:0.0275,1:0.0275]':0.055,magnirostris[&S 0:0.11]:0.11)'[&S 0:0.07333]':0.07333,conirostris[&S 0:0.18333]:0.18333)'[&S 0:0.00917]':0.00917,scandens[&S 0:0.1925]:0.1925)'[&S 0:0.0355]':0.0355,difficilis[&S 0:0.114,1:0.114]:0.228)'[&S 0:0.10346]':0.10346,(pallida[&S 0:0.08667]:0.08667,((parvulus[&S 0:0.02]:0.02,psittacula[&S 0:0.02]:0.02)'[&S 0:0.015]':0.015,pauper[&S 0:0.035]:0.035)'[&S 0:0.05167]':0.05167)'[&S 0:0.24479]':0.24479)'[&S 0:0.13404]':0.13404,Platyspiza[&S 0:0.4655]:0.4655)'[&S 0:0.06859]':0.06859,fusca[&S 0:0.53409]:0.53409)'[&S 0:0.04924]':0.04924,Pinaroloxias[&S 0:0.58333]:0.58333);
tree input1 = (((((((((fuliginosa:{1,0.055},fortis:{1,0.055})':{0,0.0275:1,0.0275}',magnirostris:{0,0.11})':{0,0.07333}',conirostris:{0,0.18333})':{0,0.00917}',scandens:{0,0.1925})':{0,0.0355}',difficilis:{0,0.114:1,0.114})':{0,0.10346}',(pallida:{0,0.08667},((parvulus:{0,0.02},psittacula:{0,0.02})':{0,0.015}',pauper:{0,0.035})':{0,0.05167}')':{0,0.24479}')':{0,0.13404}',Platyspiza:{0,0.4655})':{0,0.06859}',fusca:{0,0.53409})':{0,0.04924}',Pinaroloxias:{0,0.58333});
           ÚÄ fuliginosa:{1,0.055}
          Ú´:{0,0.0275:1,0.0275}
          ³ÀÄ fortis:{1,0.055}
         Ú´:{0,0.07333}
         ³ÀÄÄ magnirostris:{0,0.11}
        Ú´:{0,0.00917}
        ³ÀÄÄÄ conirostris:{0,0.18333}
       Ú´:{0,0.0355}
       ³ÀÄÄÄÄ scandens:{0,0.1925}
   ÚÄÄÄ´:{0,0.10346}
   ³   ÀÄÄÄÄÄ difficilis:{0,0.114:1,0.114}
  Ú´:{0,0.13404}
  ³³     ÚÄÄÄ pallida:{0,0.08667}
  ³ÀÄÄÄÄÄ´:{0,0.24479}
  ³      ³ ÚÄ parvulus:{0,0.02}
  ³      ³Ú´:{0,0.015}
  ³      ³³ÀÄ psittacula:{0,0.02}
  ³      À´:{0,0.05167}
  ³       ÀÄÄ pauper:{0,0.035}
 Ú´:{0,0.06859}
 ³ÀÄÄÄÄÄÄÄÄÄÄ Platyspiza:{0,0.4655}
Ú´:{0,0.04924}
³ÀÄÄÄÄÄÄÄÄÄÄÄ fusca:{0,0.53409}
´
ÀÄÄÄÄÄÄÄÄÄÄÄÄ Pinaroloxias:{0,0.58333}
You have chosen a non-time-reversible model: rates are free to vary
You have chosen to use equilibrium state frequencies
WARNING: if some characters have fewer than 2 character states, the output in the output table will be wrong for those chars
-------------------------------------------------------------------------------
 WARNING: You are trying to estimate 2 parameters, but only have 13 taxa.
 Make sure to try some simpler models, and expect quite imprecise estimates.
-------------------------------------------------------------------------------
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Tree = 1: UNTITLED
  -lnL =       6.042915
  AIC  =      16.085830
  AICc =      17.285830
  Rates: nonreversible
    q_0_1 = 1.661837 +/- 0.0
    q_1_0 = 6.181369 +/- 0.000001
  Statefreqs: equilibrium
    P(0) = 0.788118
    P(1) = 0.211882
tree input1 = (((((((((fuliginosa[&S 1:0.055]:0.055,fortis[&S 1:0.055]:0.055)'[&S 0:0.0275,1:0.0275]':0.055,magnirostris[&S 0:0.11]:0.11)'[&S 0:0.07333]':0.07333,conirostris[&S 0:0.18333]:0.18333)'[&S 0:0.00917]':0.00917,scandens[&S 0:0.1925]:0.1925)'[&S 0:0.0355]':0.0355,difficilis[&S 0:0.114,1:0.114]:0.228)'[&S 0:0.10346]':0.10346,(pallida[&S 0:0.08667]:0.08667,((parvulus[&S 0:0.02]:0.02,psittacula[&S 0:0.02]:0.02)'[&S 0:0.015]':0.015,pauper[&S 0:0.035]:0.035)'[&S 0:0.05167]':0.05167)'[&S 0:0.24479]':0.24479)'[&S 0:0.13404]':0.13404,Platyspiza[&S 0:0.4655]:0.4655)'[&S 0:0.06859]':0.06859,fusca[&S 0:0.53409]:0.53409)'[&S 0:0.04924]':0.04924,Pinaroloxias[&S 0:0.58333]:0.58333);
tree input1 = (((((((((fuliginosa:{1,0.055},fortis:{1,0.055})':{0,0.0275:1,0.0275}',magnirostris:{0,0.11})':{0,0.07333}',conirostris:{0,0.18333})':{0,0.00917}',scandens:{0,0.1925})':{0,0.0355}',difficilis:{0,0.114:1,0.114})':{0,0.10346}',(pallida:{0,0.08667},((parvulus:{0,0.02},psittacula:{0,0.02})':{0,0.015}',pauper:{0,0.035})':{0,0.05167}')':{0,0.24479}')':{0,0.13404}',Platyspiza:{0,0.4655})':{0,0.06859}',fusca:{0,0.53409})':{0,0.04924}',Pinaroloxias:{0,0.58333});
           ÚÄ fuliginosa:{1,0.055}
          Ú´:{0,0.0275:1,0.0275}
          ³ÀÄ fortis:{1,0.055}
         Ú´:{0,0.07333}
         ³ÀÄÄ magnirostris:{0,0.11}
        Ú´:{0,0.00917}
        ³ÀÄÄÄ conirostris:{0,0.18333}
       Ú´:{0,0.0355}
       ³ÀÄÄÄÄ scandens:{0,0.1925}
   ÚÄÄÄ´:{0,0.10346}
   ³   ÀÄÄÄÄÄ difficilis:{0,0.114:1,0.114}
  Ú´:{0,0.13404}
  ³³     ÚÄÄÄ pallida:{0,0.08667}
  ³ÀÄÄÄÄÄ´:{0,0.24479}
  ³      ³ ÚÄ parvulus:{0,0.02}
  ³      ³Ú´:{0,0.015}
  ³      ³³ÀÄ psittacula:{0,0.02}
  ³      À´:{0,0.05167}
  ³       ÀÄÄ pauper:{0,0.035}
 Ú´:{0,0.06859}
 ³ÀÄÄÄÄÄÄÄÄÄÄ Platyspiza:{0,0.4655}
Ú´:{0,0.04924}
³ÀÄÄÄÄÄÄÄÄÄÄÄ fusca:{0,0.53409}
´
ÀÄÄÄÄÄÄÄÄÄÄÄÄ Pinaroloxias:{0,0.58333}
LIB: Generator type: mt19937
LIB: Seed = 1286487402
LIB: First value = 279312541
RCPP: 'd:/temp/RtmpKepPlc/file6f204365'
Piping commands to brownie objectLIB: preprocessing command: execute 'd:/temp/RtmpKepPlc/file6f204365'
 .. conditioned command is: ;execute 'd:/temp/RtmpKepPlc/file6f204365';end;
LIB: handle cmd ';execute 'd:/temp/RtmpKepPlc/file6f204365';end;'
Opening d:/temp/RtmpKepPlc/file6f204365...
Starting to execute NEXUS file
   Entering TAXA block...done
   Entering TREES block...done
   Entering CHARACTERS block...done
   (Skipping brownie block)
Finished executing NEXUS file
TREES block contains one tree
	1	UNTITLED	(rooted, weight = 1,default tree)
Reading TAXA block...
Reading TREES block...
Reading CHARACTERS block...
Reading BROWNIE block...
You have chosen a non-time-reversible model: rates are free to vary
You have chosen equal frequencies for all states
WARNING: if some characters have fewer than 2 character states, the output in the output table will be wrong for those chars
-------------------------------------------------------------------------------
 WARNING: You are trying to estimate 2 parameters, but only have 13 taxa.
 Make sure to try some simpler models, and expect quite imprecise estimates.
-------------------------------------------------------------------------------
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Tree = 1: UNTITLED
  -lnL =       6.043574
  AIC  =      16.087148
  AICc =      17.287148
  Rates: nonreversible
    q_0_1 = 1.652106 +/- 0.0
    q_1_0 = 6.252674 +/- 0.0
  Statefreqs: uniform
    P(0) = 0.5
    P(1) = 0.5
tree input1 = (((((((((fuliginosa[&S 1:0.055]:0.055,fortis[&S 1:0.055]:0.055)'[&S 0:0.0275,1:0.0275]':0.055,magnirostris[&S 0:0.11]:0.11)'[&S 0:0.07333]':0.07333,conirostris[&S 0:0.18333]:0.18333)'[&S 0:0.00917]':0.00917,scandens[&S 0:0.1925]:0.1925)'[&S 0:0.0355]':0.0355,difficilis[&S 0:0.114,1:0.114]:0.228)'[&S 0:0.10346]':0.10346,(pallida[&S 0:0.08667]:0.08667,((parvulus[&S 0:0.02]:0.02,psittacula[&S 0:0.02]:0.02)'[&S 0:0.015]':0.015,pauper[&S 0:0.035]:0.035)'[&S 0:0.05167]':0.05167)'[&S 0:0.24479]':0.24479)'[&S 0:0.13404]':0.13404,Platyspiza[&S 0:0.4655]:0.4655)'[&S 0:0.06859]':0.06859,fusca[&S 0:0.53409]:0.53409)'[&S 0:0.04924]':0.04924,Pinaroloxias[&S 0:0.58333]:0.58333);
tree input1 = (((((((((fuliginosa:{1,0.055},fortis:{1,0.055})':{0,0.0275:1,0.0275}',magnirostris:{0,0.11})':{0,0.07333}',conirostris:{0,0.18333})':{0,0.00917}',scandens:{0,0.1925})':{0,0.0355}',difficilis:{0,0.114:1,0.114})':{0,0.10346}',(pallida:{0,0.08667},((parvulus:{0,0.02},psittacula:{0,0.02})':{0,0.015}',pauper:{0,0.035})':{0,0.05167}')':{0,0.24479}')':{0,0.13404}',Platyspiza:{0,0.4655})':{0,0.06859}',fusca:{0,0.53409})':{0,0.04924}',Pinaroloxias:{0,0.58333});
           ÚÄ fuliginosa:{1,0.055}
          Ú´:{0,0.0275:1,0.0275}
          ³ÀÄ fortis:{1,0.055}
         Ú´:{0,0.07333}
         ³ÀÄÄ magnirostris:{0,0.11}
        Ú´:{0,0.00917}
        ³ÀÄÄÄ conirostris:{0,0.18333}
       Ú´:{0,0.0355}
       ³ÀÄÄÄÄ scandens:{0,0.1925}
   ÚÄÄÄ´:{0,0.10346}
   ³   ÀÄÄÄÄÄ difficilis:{0,0.114:1,0.114}
  Ú´:{0,0.13404}
  ³³     ÚÄÄÄ pallida:{0,0.08667}
  ³ÀÄÄÄÄÄ´:{0,0.24479}
  ³      ³ ÚÄ parvulus:{0,0.02}
  ³      ³Ú´:{0,0.015}
  ³      ³³ÀÄ psittacula:{0,0.02}
  ³      À´:{0,0.05167}
  ³       ÀÄÄ pauper:{0,0.035}
 Ú´:{0,0.06859}
 ³ÀÄÄÄÄÄÄÄÄÄÄ Platyspiza:{0,0.4655}
Ú´:{0,0.04924}
³ÀÄÄÄÄÄÄÄÄÄÄÄ fusca:{0,0.53409}
´
ÀÄÄÄÄÄÄÄÄÄÄÄÄ Pinaroloxias:{0,0.58333}
You have chosen a non-time-reversible model: rates are free to vary
You have chosen to use equilibrium state frequencies
WARNING: if some characters have fewer than 2 character states, the output in the output table will be wrong for those chars
-------------------------------------------------------------------------------
 WARNING: You are trying to estimate 2 parameters, but only have 13 taxa.
 Make sure to try some simpler models, and expect quite imprecise estimates.
-------------------------------------------------------------------------------
Progress:
0%     10%     20%     30%     40%     50%     60%     70%     80%     90%     100%
|********************************************************************************|
Tree = 1: UNTITLED
  -lnL =       6.042915
  AIC  =      16.085830
  AICc =      17.285830
  Rates: nonreversible
    q_0_1 = 1.661838 +/- 0.000001
    q_1_0 = 6.181369 +/- 0.000002
  Statefreqs: equilibrium
    P(0) = 0.788118
    P(1) = 0.211882
tree input1 = (((((((((fuliginosa[&S 1:0.055]:0.055,fortis[&S 1:0.055]:0.055)'[&S 0:0.0275,1:0.0275]':0.055,magnirostris[&S 0:0.11]:0.11)'[&S 0:0.07333]':0.07333,conirostris[&S 0:0.18333]:0.18333)'[&S 0:0.00917]':0.00917,scandens[&S 0:0.1925]:0.1925)'[&S 0:0.0355]':0.0355,difficilis[&S 0:0.114,1:0.114]:0.228)'[&S 0:0.10346]':0.10346,(pallida[&S 0:0.08667]:0.08667,((parvulus[&S 0:0.02]:0.02,psittacula[&S 0:0.02]:0.02)'[&S 0:0.015]':0.015,pauper[&S 0:0.035]:0.035)'[&S 0:0.05167]':0.05167)'[&S 0:0.24479]':0.24479)'[&S 0:0.13404]':0.13404,Platyspiza[&S 0:0.4655]:0.4655)'[&S 0:0.06859]':0.06859,fusca[&S 0:0.53409]:0.53409)'[&S 0:0.04924]':0.04924,Pinaroloxias[&S 0:0.58333]:0.58333);
tree input1 = (((((((((fuliginosa:{1,0.055},fortis:{1,0.055})':{0,0.0275:1,0.0275}',magnirostris:{0,0.11})':{0,0.07333}',conirostris:{0,0.18333})':{0,0.00917}',scandens:{0,0.1925})':{0,0.0355}',difficilis:{0,0.114:1,0.114})':{0,0.10346}',(pallida:{0,0.08667},((parvulus:{0,0.02},psittacula:{0,0.02})':{0,0.015}',pauper:{0,0.035})':{0,0.05167}')':{0,0.24479}')':{0,0.13404}',Platyspiza:{0,0.4655})':{0,0.06859}',fusca:{0,0.53409})':{0,0.04924}',Pinaroloxias:{0,0.58333});
           ÚÄ fuliginosa:{1,0.055}
          Ú´:{0,0.0275:1,0.0275}
          ³ÀÄ fortis:{1,0.055}
         Ú´:{0,0.07333}
         ³ÀÄÄ magnirostris:{0,0.11}
        Ú´:{0,0.00917}
        ³ÀÄÄÄ conirostris:{0,0.18333}
       Ú´:{0,0.0355}
       ³ÀÄÄÄÄ scandens:{0,0.1925}
   ÚÄÄÄ´:{0,0.10346}
   ³   ÀÄÄÄÄÄ difficilis:{0,0.114:1,0.114}
  Ú´:{0,0.13404}
  ³³     ÚÄÄÄ pallida:{0,0.08667}
  ³ÀÄÄÄÄÄ´:{0,0.24479}
  ³      ³ ÚÄ parvulus:{0,0.02}
  ³      ³Ú´:{0,0.015}
  ³      ³³ÀÄ psittacula:{0,0.02}
  ³      À´:{0,0.05167}
  ³       ÀÄÄ pauper:{0,0.035}
 Ú´:{0,0.06859}
 ³ÀÄÄÄÄÄÄÄÄÄÄ Platyspiza:{0,0.4655}
Ú´:{0,0.04924}
³ÀÄÄÄÄÄÄÄÄÄÄÄ fusca:{0,0.53409}
´
ÀÄÄÄÄÄÄÄÄÄÄÄÄ Pinaroloxias:{0,0.58333}
* checking PDF version of manual ... OK