* using log directory 'd:/Rcompile/CRANpkg/local/2.10/PresenceAbsence.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'PresenceAbsence/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PresenceAbsence' version '1.1.4'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PresenceAbsence' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: Kappa.Rd:29-30: Dropping empty section \note
prepare_Rd: Kappa.Rd:27: Dropping empty section \references
prepare_Rd: PresenceAbsence.package.Rd:54: Dropping empty section \seealso
prepare_Rd: auc.Rd:46-47: Dropping empty section \note
prepare_Rd: auc.roc.plot.Rd:74-75: Dropping empty section \note
prepare_Rd: auc.roc.plot.Rd:72: Dropping empty section \references
prepare_Rd: calibration.plot.Rd:56-57: Dropping empty section \note
prepare_Rd: cmx.Rd:44: Dropping empty section \references
prepare_Rd: error.threshold.plot.Rd:86-87: Dropping empty section \note
prepare_Rd: error.threshold.plot.Rd:84: Dropping empty section \references
prepare_Rd: optimal.thresholds.Rd:102: Dropping empty section \note
prepare_Rd: pcc.Rd:28-29: Dropping empty section \note
prepare_Rd: pcc.Rd:26: Dropping empty section \references
prepare_Rd: predicted.prevalence.Rd:34-35: Dropping empty section \note
prepare_Rd: predicted.prevalence.Rd:32: Dropping empty section \references
prepare_Rd: predicted.prevalence.Rd:36: Dropping empty section \seealso
prepare_Rd: presence.absence.accuracy.Rd:63-64: Dropping empty section \note
prepare_Rd: presence.absence.accuracy.Rd:61: Dropping empty section \references
prepare_Rd: presence.absence.hist.Rd:70-71: Dropping empty section \note
prepare_Rd: presence.absence.hist.Rd:68: Dropping empty section \references
prepare_Rd: presence.absence.simulation.Rd:40: Dropping empty section \references
prepare_Rd: presence.absence.simulation.Rd:43: Dropping empty section \seealso
prepare_Rd: presence.absence.summary.Rd:62-63: Dropping empty section \note
prepare_Rd: presence.absence.summary.Rd:60: Dropping empty section \references
prepare_Rd: roc.plot.calculate.Rd:41-42: Dropping empty section \note
prepare_Rd: roc.plot.calculate.Rd:39: Dropping empty section \references
prepare_Rd: sensitivity.Rd:27-28: Dropping empty section \note
prepare_Rd: sensitivity.Rd:25: Dropping empty section \references
prepare_Rd: specificity.Rd:28-29: Dropping empty section \note
prepare_Rd: specificity.Rd:26: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK