* using log directory 'd:/Rcompile/CRANpkg/local/2.10/MASS.Rcheck' * using R version 2.10.1 (2009-12-14) * using session charset: ISO8859-1 * checking for file 'MASS/DESCRIPTION' ... OK * this is package 'MASS' version '7.3-7' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'MASS' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... OK * checking differences from 'MASS-Ex.Rout' to 'MASS-Ex.Rout.save' ... 1d0 < > options(pager = "console") 287a287,289 > > detaching 'package:nlme' > 653a656,658 > > detaching 'package:nlme', 'package:survival', 'package:splines' > 866c871 < -2.42080777 -0.61510520 -0.03573836 0.81641138 2.15153497 --- > -2.42080780 -0.61510520 -0.03573836 0.81641138 2.15153499 904a910,912 > > detaching 'package:nlme' > 1521c1529 < factor(subject)2 -2.890e-16 2.828e-01 -1.02e-15 1.000000 --- > factor(subject)2 -2.300e-15 2.828e-01 -8.13e-15 1.000000 1676a1685,1687 > > detaching 'package:nlme' > 1714c1725 < (0.89052009) (0.01948648) --- > (0.89052011) (0.01948648) 1719c1730 < (0.89438949) (0.01956818) --- > (0.89438948) (0.01956818) 1731,1732c1742,1743 < -0.009653468 1.006167671 6.627292033 < ( 0.071472707) ( 0.077072972) ( 2.710331636) --- > -0.009653468 1.006167671 6.627292034 > ( 0.071472707) ( 0.077072978) ( 2.710332064) 1745c1756 < ( 0.3126797) ( 2.5819678) --- > ( 0.3126797) ( 2.5819679) 2036a2048,2050 > > detaching 'package:survival', 'package:splines' > 2321a2336,2338 > > detaching 'package:nlme' > 2357c2374 < ContHigh 1.271e-15 1.690e-01 7.52e-15 1.000000 --- > ContHigh -1.490e-15 1.690e-01 -8.81e-15 1.000000 2726a2744,2746 > > detaching 'package:nnet' > 3007a3028,3030 > > detaching 'package:survival', 'package:splines' > 3199c3222 < -3.631e+01 7.292e-01 4.167e-01 -1.647e-16 --- > -3.631e+01 7.292e-01 4.167e-01 -8.131e-17 3340a3364,3366 > > detaching 'package:survival', 'package:splines' > 3359c3385 < 0.07776401 3.08304824 3.30137838 3.44562531 2.80464433 --- > 0.07776401 3.08304824 3.30137838 3.44562531 2.80464434 3361c3387 < 2.60835015 3.03357724 3.52301734 3.38711844 3.46709395 --- > 2.60835015 3.03357725 3.52301734 3.38711844 3.46709396 3363c3389 < 3.81438456 3.73878664 3.51332580 3.39741114 3.47088607 --- > 3.81438456 3.73878664 3.51332581 3.39741115 3.47088608 3365c3391 < 3.72895847 3.31863862 3.37938672 2.96452195 3.58468686 --- > 3.72895847 3.31863862 3.37938673 2.96452195 3.58468686 3367c3393 < 3.39628029 3.36998871 -2.96015461 --- > 3.39628029 3.36998872 -2.96015460 3390c3416 < Achieved convergence tolerance: 4.939e-06 --- > Achieved convergence tolerance: 4.923e-06 3413a3440,3442 > > detaching 'package:lattice' > 3527c3556 < (Intercept) 2.7870650 (Intr) --- > (Intercept) 2.7870651 (Intr) 3529c3558 < Residual 6.2483880 --- > Residual 6.2483879 3549c3578 < -4.05938661 -0.63108408 0.06551865 0.71786439 2.79454034 --- > -4.05938661 -0.63108408 0.06551865 0.71786438 2.79454034 3556a3586,3588 > > detaching 'package:nlme' > 3588c3620 < block 5 343.29 68.659 4.4467 0.015939 * --- > block 5 343.30 68.659 4.4467 0.015939 * 3702c3734 < Residuals 45 7968.7 177.1 --- > Residuals 45 7968.8 177.1 3720c3752 < Nf: Dev 2 484.1 242.0 1.3669 0.2653 --- > Nf: Dev 2 484.1 242.1 1.3669 0.2653 3723,3724c3755,3756 < Nf:V: Dev 4 153.4 38.4 0.2166 0.9279 < Residuals 45 7968.7 177.1 --- > Nf:V: Dev 4 153.4 38.3 0.2166 0.9279 > Residuals 45 7968.8 177.1 3806a3839,3841 > > detaching 'package:nlme' > 4228a4264,4266 > > detaching 'package:nlme' > 5081a5120,5122 > > detaching 'package:lattice' > OK * checking tests ... OK * checking PDF version of manual ... OK