* using log directory 'd:/Rcompile/CRANpkg/local/2.10/JM.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'JM/DESCRIPTION' ... OK
* this is package 'JM' version '0.7-0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'JM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
H.longAFTWB: no visible binding for global variable 'X'
H.longAFTWB: no visible binding for global variable 'Xtime'
H.longAFTWB: no visible binding for global variable 'WW'
H.longAFTWB: no visible binding for global variable 'gammas'
H.longAFTWB: no visible binding for global variable 'Xs'
H.longAFTWB: no visible binding for global variable 'Zsb'
H.longAFTWB: no visible binding for global variable 'alpha'
H.longAFTWB: no visible binding for global variable 'wk'
H.longAFTWB: no visible binding for global variable 'P'
H.longAFTWB: no visible binding for global variable 'XtX'
H.longAFTWB: no visible binding for global variable 'sigma'
H.longAFTWB: no visible binding for global variable 'id.GK'
H.longAFTWB: no visible binding for global variable 'd'
H.longAFTWB: no visible binding for global variable 'sigma.t'
H.longAFTWB: no visible binding for global variable 'ncx'
H.longAFTWB: no visible binding for global variable 'parameterization'
H.longAFTWB: no visible binding for global variable 'indFixed'
H.longAFTWB: no visible binding for global variable 'Dalpha'
H.longAFTWB: no visible binding for global variable 'Xs.deriv'
H.longAFTWB: no visible binding for global variable 'p.byt'
H.longAFTWB: no visible binding for global variable 'wGH'
H.longPC: no visible binding for global variable 'X'
H.longPC: no visible binding for global variable 'parameterization'
H.longPC: no visible binding for global variable 'Xs'
H.longPC: no visible binding for global variable 'Zsb'
H.longPC: no visible binding for global variable 'alpha'
H.longPC: no visible binding for global variable 'Xs.deriv'
H.longPC: no visible binding for global variable 'indFixed'
H.longPC: no visible binding for global variable 'Zsb.deriv'
H.longPC: no visible binding for global variable 'Dalpha'
H.longPC: no visible binding for global variable 'eta.tw'
H.longPC: no visible binding for global variable 'XtX'
H.longPC: no visible binding for global variable 'sigma'
H.longPC: no visible binding for global variable 'xi'
H.longPC: no visible binding for global variable 'ind.K'
H.longPC: no visible binding for global variable 'wkP'
H.longPC: no visible binding for global variable 'ncx'
H.longPC: no visible binding for global variable 'id.GK'
H.longPC: no visible binding for global variable 'p.byt'
H.longPC: no visible binding for global variable 'wGH'
H.longSplinePH: no visible binding for global variable 'X'
H.longSplinePH: no visible binding for global variable
  'parameterization'
H.longSplinePH: no visible binding for global variable 'Xs'
H.longSplinePH: no visible binding for global variable 'Zsb'
H.longSplinePH: no visible binding for global variable 'alpha'
H.longSplinePH: no visible binding for global variable 'Xs.deriv'
H.longSplinePH: no visible binding for global variable 'indFixed'
H.longSplinePH: no visible binding for global variable 'Zsb.deriv'
H.longSplinePH: no visible binding for global variable 'Dalpha'
H.longSplinePH: no visible binding for global variable 'eta.tw1'
H.longSplinePH: no visible binding for global variable 'P'
H.longSplinePH: no visible binding for global variable 'XtX'
H.longSplinePH: no visible binding for global variable 'sigma'
H.longSplinePH: no visible binding for global variable 'wk'
H.longSplinePH: no visible binding for global variable 'eta.ws'
H.longSplinePH: no visible binding for global variable 'ncx'
H.longSplinePH: no visible binding for global variable 'id.GK'
H.longSplinePH: no visible binding for global variable 'p.byt'
H.longSplinePH: no visible binding for global variable 'wGH'
H.longWB: no visible binding for global variable 'X'
H.longWB: no visible binding for global variable 'parameterization'
H.longWB: no visible binding for global variable 'Xs'
H.longWB: no visible binding for global variable 'Zsb'
H.longWB: no visible binding for global variable 'alpha'
H.longWB: no visible binding for global variable 'Xs.deriv'
H.longWB: no visible binding for global variable 'indFixed'
H.longWB: no visible binding for global variable 'Zsb.deriv'
H.longWB: no visible binding for global variable 'Dalpha'
H.longWB: no visible binding for global variable 'eta.tw'
H.longWB: no visible binding for global variable 'P'
H.longWB: no visible binding for global variable 'XtX'
H.longWB: no visible binding for global variable 'sigma'
H.longWB: no visible binding for global variable 'wk'
H.longWB: no visible binding for global variable 'sigma.t'
H.longWB: no visible binding for global variable 'log.st'
H.longWB: no visible binding for global variable 'ncx'
H.longWB: no visible binding for global variable 'id.GK'
H.longWB: no visible binding for global variable 'p.byt'
H.longWB: no visible binding for global variable 'wGH'
HessLongPH: no visible binding for global variable 'XtX'
HessLongPH: no visible binding for global variable 'sigma'
HessLongPH: no visible binding for global variable 'ncx'
HessLongPH: no visible binding for global variable 'lambda0.'
HessLongPH: no visible binding for global variable 'alpha'
HessLongPH: no visible binding for global variable 'indT'
HessLongPH: no visible binding for global variable 'p.byt.'
HessLongPH: no visible binding for global variable 'wGH'
HessSurvPH: no visible binding for global variable 'indT'
HessSurvPH: no visible binding for global variable 'ncww'
HessSurvPH: no visible binding for global variable 'lambda0.'
HessSurvPH: no visible binding for global variable 'p.byt.'
HessSurvPH: no visible binding for global variable 'wGH'
LogLik.phGH: no visible binding for global variable 'ncx'
LogLik.phGH: no visible binding for global variable 'ncww'
LogLik.phGH: no visible binding for global variable 'diag.D'
LogLik.phGH: no visible binding for global variable 'X'
LogLik.phGH: no visible binding for global variable 'Xtime'
LogLik.phGH: no visible binding for global variable 'Xtime2'
LogLik.phGH: no visible binding for global variable 'Ztime.b'
LogLik.phGH: no visible binding for global variable 'Ztime2.b'
LogLik.phGH: no visible binding for global variable 'WW'
LogLik.phGH: no visible binding for global variable 'n'
LogLik.phGH: no visible binding for global variable 'Ztb'
LogLik.phGH: no visible binding for global variable 'y'
LogLik.phGH: no visible binding for global variable 'id'
LogLik.phGH: no visible binding for global variable 'ind.T0'
LogLik.phGH: no visible binding for global variable 'k'
LogLik.phGH: no visible binding for global variable 'unq.indT'
LogLik.phGH: no visible binding for global variable 'ind.L1'
LogLik.phGH: no visible binding for global variable 'indT'
LogLik.phGH: no visible binding for global variable 'd'
LogLik.phGH: no visible binding for global variable 'ncz'
LogLik.phGH: no visible binding for global variable 'b'
LogLik.phGH: no visible binding for global variable 'wGH'
LogLik.piecewiseGH: no visible binding for global variable
  'list.thetas'
LogLik.piecewiseGH: no visible binding for global variable 'diag.D'
LogLik.piecewiseGH: no visible binding for global variable 'X'
LogLik.piecewiseGH: no visible binding for global variable 'WW'
LogLik.piecewiseGH: no visible binding for global variable
  'parameterization'
LogLik.piecewiseGH: no visible binding for global variable 'Xtime'
LogLik.piecewiseGH: no visible binding for global variable 'Ztime.b'
LogLik.piecewiseGH: no visible binding for global variable 'Xs'
LogLik.piecewiseGH: no visible binding for global variable 'Zsb'
LogLik.piecewiseGH: no visible binding for global variable
  'Xtime.deriv'
LogLik.piecewiseGH: no visible binding for global variable 'indFixed'
LogLik.piecewiseGH: no visible binding for global variable
  'Ztime.b.deriv'
LogLik.piecewiseGH: no visible binding for global variable 'Xs.deriv'
LogLik.piecewiseGH: no visible binding for global variable 'Zsb.deriv'
LogLik.piecewiseGH: no visible binding for global variable 'Ztb'
LogLik.piecewiseGH: no visible binding for global variable 'y'
LogLik.piecewiseGH: no visible binding for global variable 'id'
LogLik.piecewiseGH: no visible binding for global variable 'ind.D'
LogLik.piecewiseGH: no visible binding for global variable 'ind.K'
LogLik.piecewiseGH: no visible binding for global variable 'wkP'
LogLik.piecewiseGH: no visible binding for global variable 'id.GK'
LogLik.piecewiseGH: no visible binding for global variable 'd'
LogLik.piecewiseGH: no visible binding for global variable 'ncz'
LogLik.piecewiseGH: no visible binding for global variable 'b'
LogLik.piecewiseGH: no visible binding for global variable 'k'
LogLik.piecewiseGH: no visible binding for global variable 'n'
LogLik.piecewiseGH: no visible binding for global variable 'wGH'
LogLik.splineGH: no visible binding for global variable 'list.thetas'
LogLik.splineGH: no visible binding for global variable 'diag.D'
LogLik.splineGH: no visible binding for global variable 'X'
LogLik.splineGH: no visible binding for global variable 'W1'
LogLik.splineGH: no visible binding for global variable 'n'
LogLik.splineGH: no visible binding for global variable 'W2'
LogLik.splineGH: no visible binding for global variable
  'parameterization'
LogLik.splineGH: no visible binding for global variable 'Xtime'
LogLik.splineGH: no visible binding for global variable 'Ztime.b'
LogLik.splineGH: no visible binding for global variable 'Xs'
LogLik.splineGH: no visible binding for global variable 'Zsb'
LogLik.splineGH: no visible binding for global variable 'Xtime.deriv'
LogLik.splineGH: no visible binding for global variable 'indFixed'
LogLik.splineGH: no visible binding for global variable 'Ztime.b.deriv'
LogLik.splineGH: no visible binding for global variable 'Xs.deriv'
LogLik.splineGH: no visible binding for global variable 'Zsb.deriv'
LogLik.splineGH: no visible binding for global variable 'W2s'
LogLik.splineGH: no visible binding for global variable 'Ztb'
LogLik.splineGH: no visible binding for global variable 'y'
LogLik.splineGH: no visible binding for global variable 'id'
LogLik.splineGH: no visible binding for global variable 'P'
LogLik.splineGH: no visible binding for global variable 'wk'
LogLik.splineGH: no visible binding for global variable 'id.GK'
LogLik.splineGH: no visible binding for global variable 'd'
LogLik.splineGH: no visible binding for global variable 'ncz'
LogLik.splineGH: no visible binding for global variable 'b'
LogLik.splineGH: no visible binding for global variable 'k'
LogLik.splineGH: no visible binding for global variable 'wGH'
LogLik.weibullAFTGH: no visible binding for global variable
  'list.thetas'
LogLik.weibullAFTGH: no visible binding for global variable 'scaleWB'
LogLik.weibullAFTGH: no visible binding for global variable 'diag.D'
LogLik.weibullAFTGH: no visible binding for global variable 'X'
LogLik.weibullAFTGH: no visible binding for global variable 'WW'
LogLik.weibullAFTGH: no visible binding for global variable
  'parameterization'
LogLik.weibullAFTGH: no visible binding for global variable 'Xtime'
LogLik.weibullAFTGH: no visible binding for global variable 'Ztime.b'
LogLik.weibullAFTGH: no visible binding for global variable 'Xs'
LogLik.weibullAFTGH: no visible binding for global variable 'Zsb'
LogLik.weibullAFTGH: no visible binding for global variable
  'Xtime.deriv'
LogLik.weibullAFTGH: no visible binding for global variable 'indFixed'
LogLik.weibullAFTGH: no visible binding for global variable
  'Ztime.b.deriv'
LogLik.weibullAFTGH: no visible binding for global variable 'Xs.deriv'
LogLik.weibullAFTGH: no visible binding for global variable 'Zsb.deriv'
LogLik.weibullAFTGH: no visible binding for global variable 'Ztb'
LogLik.weibullAFTGH: no visible binding for global variable 'y'
LogLik.weibullAFTGH: no visible binding for global variable 'id'
LogLik.weibullAFTGH: no visible binding for global variable 'P'
LogLik.weibullAFTGH: no visible binding for global variable 'wk'
LogLik.weibullAFTGH: no visible binding for global variable 'id.GK'
LogLik.weibullAFTGH: no visible binding for global variable 'd'
LogLik.weibullAFTGH: no visible binding for global variable 'ncz'
LogLik.weibullAFTGH: no visible binding for global variable 'b'
LogLik.weibullAFTGH: no visible binding for global variable 'k'
LogLik.weibullAFTGH: no visible binding for global variable 'n'
LogLik.weibullAFTGH: no visible binding for global variable 'wGH'
LogLik.weibullGH: no visible binding for global variable 'list.thetas'
LogLik.weibullGH: no visible binding for global variable 'scaleWB'
LogLik.weibullGH: no visible binding for global variable 'diag.D'
LogLik.weibullGH: no visible binding for global variable 'X'
LogLik.weibullGH: no visible binding for global variable 'WW'
LogLik.weibullGH: no visible binding for global variable
  'parameterization'
LogLik.weibullGH: no visible binding for global variable 'Xtime'
LogLik.weibullGH: no visible binding for global variable 'Ztime.b'
LogLik.weibullGH: no visible binding for global variable 'Xs'
LogLik.weibullGH: no visible binding for global variable 'Zsb'
LogLik.weibullGH: no visible binding for global variable 'Xtime.deriv'
LogLik.weibullGH: no visible binding for global variable 'indFixed'
LogLik.weibullGH: no visible binding for global variable
  'Ztime.b.deriv'
LogLik.weibullGH: no visible binding for global variable 'Xs.deriv'
LogLik.weibullGH: no visible binding for global variable 'Zsb.deriv'
LogLik.weibullGH: no visible binding for global variable 'Ztb'
LogLik.weibullGH: no visible binding for global variable 'y'
LogLik.weibullGH: no visible binding for global variable 'id'
LogLik.weibullGH: no visible binding for global variable 'logT'
LogLik.weibullGH: no visible binding for global variable 'P'
LogLik.weibullGH: no visible binding for global variable 'wk'
LogLik.weibullGH: no visible binding for global variable 'log.st'
LogLik.weibullGH: no visible binding for global variable 'id.GK'
LogLik.weibullGH: no visible binding for global variable 'd'
LogLik.weibullGH: no visible binding for global variable 'ncz'
LogLik.weibullGH: no visible binding for global variable 'b'
LogLik.weibullGH: no visible binding for global variable 'k'
LogLik.weibullGH: no visible binding for global variable 'n'
LogLik.weibullGH: no visible binding for global variable 'wGH'
MI.fixed.times: no visible binding for global variable 'obs.times'
MI.fixed.times: no visible binding for global variable 'id'
MI.fixed.times: no visible binding for global variable 'object'
MI.fixed.times: no visible binding for global variable 'n'
MI.fixed.times: no visible binding for global variable 'y'
MI.fixed.times: no visible binding for global variable 'logT'
MI.fixed.times: no visible binding for global variable 'd'
MI.fixed.times: no visible binding for global variable 'X'
MI.fixed.times: no visible binding for global variable 'Z'
MI.fixed.times: no visible binding for global variable 'Xtime'
MI.fixed.times: no visible binding for global variable 'Ztime'
MI.fixed.times: no visible binding for global variable 'method'
MI.fixed.times: no visible binding for global variable 'P'
MI.fixed.times: no visible binding for global variable 'log.st'
MI.fixed.times: no visible binding for global variable 'Xs'
MI.fixed.times: no visible binding for global variable 'Zs'
MI.fixed.times: no visible binding for global variable 'W2s'
MI.fixed.times: no visible binding for global variable 'W2'
MI.fixed.times: no visible binding for global variable 'st'
MI.fixed.times: no visible binding for global variable 'ind.D'
MI.fixed.times: no visible binding for global variable 'ind.K'
MI.fixed.times: no visible binding for global variable 'wkP'
MI.fixed.times: no visible binding for global variable 'WW'
MI.fixed.times: no visible binding for global variable 'ncz'
MI.fixed.times: no visible binding for global variable 'type'
MI.fixed.times: no visible binding for global variable 'M'
MI.fixed.times : <anonymous>: no visible binding for global variable
  'ncz'
MI.fixed.times : <anonymous>: no visible binding for global variable
  'M'
MI.fixed.times : <anonymous>: no visible binding for global variable
  'object'
MI.fixed.times : <anonymous>: no visible binding for global variable
  'type'
MI.fixed.times : <anonymous> : <anonymous>: no visible binding for
  global variable 'ncz'
MI.fixed.times : <anonymous> : <anonymous>: no visible binding for
  global variable 'object'
MI.fixed.times: no visible binding for global variable 'return.data'
MI.random.times: no visible binding for global variable 'obs.times'
MI.random.times: no visible binding for global variable 'ni'
MI.random.times: no visible binding for global variable 'object'
MI.random.times: no visible binding for global variable 'y'
MI.random.times: no visible binding for global variable 'logT'
MI.random.times: no visible binding for global variable 'd'
MI.random.times: no visible binding for global variable 'X'
MI.random.times: no visible binding for global variable 'Z'
MI.random.times: no visible binding for global variable 'Xtime'
MI.random.times: no visible binding for global variable 'Ztime'
MI.random.times: no visible binding for global variable 'method'
MI.random.times: no visible binding for global variable 'P'
MI.random.times: no visible binding for global variable 'log.st'
MI.random.times: no visible binding for global variable 'Xs'
MI.random.times: no visible binding for global variable 'Zs'
MI.random.times: no visible binding for global variable 'W2s'
MI.random.times: no visible binding for global variable 'W2'
MI.random.times: no visible binding for global variable 'st'
MI.random.times: no visible binding for global variable 'ind.D'
MI.random.times: no visible binding for global variable 'ind.K'
MI.random.times: no visible binding for global variable 'wkP'
MI.random.times: no visible binding for global variable 'WW'
MI.random.times: no visible binding for global variable 'id'
MI.random.times: no visible binding for global variable 'ncz'
MI.random.times: no visible binding for global variable 'M'
MI.random.times: no visible binding for global variable 'n'
MI.random.times: no visible binding for global variable 'type'
MI.random.times : <anonymous>: no visible binding for global variable
  'ncz'
MI.random.times : <anonymous>: no visible binding for global variable
  'object'
MI.random.times : <anonymous>: no visible binding for global variable
  'n'
S.b: no visible binding for global variable 'method'
S.b: no visible binding for global variable 'data.id'
S.b: no visible binding for global variable 'timeVar'
S.b: no visible binding for global variable 'object'
S.b: no visible binding for global variable 'TermsY'
S.b: no visible binding for global variable 'parameterization'
S.b: no visible binding for global variable 'formYx'
S.b: no visible binding for global variable 'betas.new'
S.b: no visible binding for global variable 'derivForm'
S.b: no visible binding for global variable 'indFixed'
S.b: no visible binding for global variable 'indRandom'
S.b: no visible binding for global variable 'alpha.new'
S.b: no visible binding for global variable 'Dalpha.new'
S.b: no visible binding for global variable 'W'
S.b: no visible binding for global variable 'gammas.new'
S.b: no visible binding for global variable 'sigma.t.new'
S.b: no visible binding for global variable 'strt'
S.b : <anonymous>: no visible binding for global variable 'object'
S.b: no visible binding for global variable 'gammas.bs.new'
S.b: no visible binding for global variable 'survTimes'
S.b: no visible binding for global variable 'Q'
S.b: no visible binding for global variable 'xi.new'
Score.phGH: no visible binding for global variable 'ncx'
Score.phGH: no visible binding for global variable 'ncww'
Score.phGH: no visible binding for global variable 'diag.D'
Score.phGH: no visible binding for global variable 'X'
Score.phGH: no visible binding for global variable 'Xtime'
Score.phGH: no visible binding for global variable 'Xtime2'
Score.phGH: no visible binding for global variable 'Ztime.b'
Score.phGH: no visible binding for global variable 'Ztime2.b'
Score.phGH: no visible binding for global variable 'WW'
Score.phGH: no visible binding for global variable 'n'
Score.phGH: no visible binding for global variable 'Ztb'
Score.phGH: no visible binding for global variable 'y'
Score.phGH: no visible binding for global variable 'id'
Score.phGH: no visible binding for global variable 'lambda0'
Score.phGH: no visible binding for global variable 'ind.T0'
Score.phGH: no visible binding for global variable 'ind.L1'
Score.phGH: no visible binding for global variable 'k'
Score.phGH: no visible binding for global variable 'unq.indT'
Score.phGH: no visible binding for global variable 'indT'
Score.phGH: no visible binding for global variable 'd'
Score.phGH: no visible binding for global variable 'ncz'
Score.phGH: no visible binding for global variable 'b'
Score.phGH: no visible binding for global variable 'wGH'
Score.phGH: no visible binding for global variable 'b2'
Score.phGH: no visible binding for global variable 'Z'
Score.phGH: no visible binding for global variable 'ZtZ'
Score.phGH: no visible binding for global variable 'N'
Score.piecewiseGH: no visible binding for global variable 'list.thetas'
Score.piecewiseGH: no visible binding for global variable 'diag.D'
Score.piecewiseGH: no visible binding for global variable 'X'
Score.piecewiseGH: no visible binding for global variable 'WW'
Score.piecewiseGH: no visible binding for global variable 'n'
Score.piecewiseGH: no visible binding for global variable
  'parameterization'
Score.piecewiseGH: no visible binding for global variable 'Xtime'
Score.piecewiseGH: no visible binding for global variable 'Ztime.b'
Score.piecewiseGH: no visible binding for global variable 'Xs'
Score.piecewiseGH: no visible binding for global variable 'Zsb'
Score.piecewiseGH: no visible binding for global variable 'Xtime.deriv'
Score.piecewiseGH: no visible binding for global variable 'indFixed'
Score.piecewiseGH: no visible binding for global variable
  'Ztime.b.deriv'
Score.piecewiseGH: no visible binding for global variable 'Xs.deriv'
Score.piecewiseGH: no visible binding for global variable 'Zsb.deriv'
Score.piecewiseGH: no visible binding for global variable 'Ztb'
Score.piecewiseGH: no visible binding for global variable 'y'
Score.piecewiseGH: no visible binding for global variable 'id'
Score.piecewiseGH: no visible binding for global variable 'ind.D'
Score.piecewiseGH: no visible binding for global variable 'ind.K'
Score.piecewiseGH: no visible binding for global variable 'wkP'
Score.piecewiseGH: no visible binding for global variable 'id.GK'
Score.piecewiseGH: no visible binding for global variable 'd'
Score.piecewiseGH: no visible binding for global variable 'ncz'
Score.piecewiseGH: no visible binding for global variable 'b'
Score.piecewiseGH: no visible binding for global variable 'k'
Score.piecewiseGH: no visible binding for global variable 'wGH'
Score.piecewiseGH: no visible binding for global variable 'b2'
Score.piecewiseGH: no visible binding for global variable 'Z'
Score.piecewiseGH: no visible binding for global variable 'ZtZ'
Score.piecewiseGH: no visible binding for global variable 'ncx'
Score.piecewiseGH: no visible binding for global variable 'N'
Score.piecewiseGH: no visible binding for global variable 'Q'
Score.splineGH: no visible binding for global variable 'list.thetas'
Score.splineGH: no visible binding for global variable 'diag.D'
Score.splineGH: no visible binding for global variable 'X'
Score.splineGH: no visible binding for global variable 'W1'
Score.splineGH: no visible binding for global variable 'n'
Score.splineGH: no visible binding for global variable 'W2'
Score.splineGH: no visible binding for global variable
  'parameterization'
Score.splineGH: no visible binding for global variable 'Xtime'
Score.splineGH: no visible binding for global variable 'Ztime.b'
Score.splineGH: no visible binding for global variable 'Xs'
Score.splineGH: no visible binding for global variable 'Zsb'
Score.splineGH: no visible binding for global variable 'Xtime.deriv'
Score.splineGH: no visible binding for global variable 'indFixed'
Score.splineGH: no visible binding for global variable 'Ztime.b.deriv'
Score.splineGH: no visible binding for global variable 'Xs.deriv'
Score.splineGH: no visible binding for global variable 'Zsb.deriv'
Score.splineGH: no visible binding for global variable 'W2s'
Score.splineGH: no visible binding for global variable 'P'
Score.splineGH: no visible binding for global variable 'Ztb'
Score.splineGH: no visible binding for global variable 'y'
Score.splineGH: no visible binding for global variable 'id'
Score.splineGH: no visible binding for global variable 'wk'
Score.splineGH: no visible binding for global variable 'id.GK'
Score.splineGH: no visible binding for global variable 'd'
Score.splineGH: no visible binding for global variable 'ncz'
Score.splineGH: no visible binding for global variable 'b'
Score.splineGH: no visible binding for global variable 'k'
Score.splineGH: no visible binding for global variable 'wGH'
Score.splineGH: no visible binding for global variable 'b2'
Score.splineGH: no visible binding for global variable 'Z'
Score.splineGH: no visible binding for global variable 'ZtZ'
Score.splineGH: no visible binding for global variable 'ncx'
Score.splineGH: no visible binding for global variable 'N'
Score.splineGH: no visible binding for global variable 'nk'
Score.weibullAFTGH: no visible binding for global variable
  'list.thetas'
Score.weibullAFTGH: no visible binding for global variable 'scaleWB'
Score.weibullAFTGH: no visible binding for global variable 'diag.D'
Score.weibullAFTGH: no visible binding for global variable 'X'
Score.weibullAFTGH: no visible binding for global variable 'WW'
Score.weibullAFTGH: no visible binding for global variable
  'parameterization'
Score.weibullAFTGH: no visible binding for global variable 'Xtime'
Score.weibullAFTGH: no visible binding for global variable 'Ztime.b'
Score.weibullAFTGH: no visible binding for global variable 'Xs'
Score.weibullAFTGH: no visible binding for global variable 'Zsb'
Score.weibullAFTGH: no visible binding for global variable
  'Xtime.deriv'
Score.weibullAFTGH: no visible binding for global variable 'indFixed'
Score.weibullAFTGH: no visible binding for global variable
  'Ztime.b.deriv'
Score.weibullAFTGH: no visible binding for global variable 'Xs.deriv'
Score.weibullAFTGH: no visible binding for global variable 'Zsb.deriv'
Score.weibullAFTGH: no visible binding for global variable 'wk'
Score.weibullAFTGH: no visible binding for global variable 'P'
Score.weibullAFTGH: no visible binding for global variable 'Ztb'
Score.weibullAFTGH: no visible binding for global variable 'y'
Score.weibullAFTGH: no visible binding for global variable 'id'
Score.weibullAFTGH: no visible binding for global variable 'id.GK'
Score.weibullAFTGH: no visible binding for global variable 'd'
Score.weibullAFTGH: no visible binding for global variable 'ncz'
Score.weibullAFTGH: no visible binding for global variable 'b'
Score.weibullAFTGH: no visible binding for global variable 'k'
Score.weibullAFTGH: no visible binding for global variable 'n'
Score.weibullAFTGH: no visible binding for global variable 'wGH'
Score.weibullAFTGH: no visible binding for global variable 'b2'
Score.weibullAFTGH: no visible binding for global variable 'Z'
Score.weibullAFTGH: no visible binding for global variable 'ZtZ'
Score.weibullAFTGH: no visible binding for global variable 'ncx'
Score.weibullAFTGH: no visible binding for global variable 'N'
Score.weibullGH: no visible binding for global variable 'list.thetas'
Score.weibullGH: no visible binding for global variable 'scaleWB'
Score.weibullGH: no visible binding for global variable 'diag.D'
Score.weibullGH: no visible binding for global variable 'X'
Score.weibullGH: no visible binding for global variable 'WW'
Score.weibullGH: no visible binding for global variable
  'parameterization'
Score.weibullGH: no visible binding for global variable 'Xtime'
Score.weibullGH: no visible binding for global variable 'Ztime.b'
Score.weibullGH: no visible binding for global variable 'Xs'
Score.weibullGH: no visible binding for global variable 'Zsb'
Score.weibullGH: no visible binding for global variable 'Xtime.deriv'
Score.weibullGH: no visible binding for global variable 'indFixed'
Score.weibullGH: no visible binding for global variable 'Ztime.b.deriv'
Score.weibullGH: no visible binding for global variable 'Xs.deriv'
Score.weibullGH: no visible binding for global variable 'Zsb.deriv'
Score.weibullGH: no visible binding for global variable 'P'
Score.weibullGH: no visible binding for global variable 'Ztb'
Score.weibullGH: no visible binding for global variable 'y'
Score.weibullGH: no visible binding for global variable 'id'
Score.weibullGH: no visible binding for global variable 'logT'
Score.weibullGH: no visible binding for global variable 'wk'
Score.weibullGH: no visible binding for global variable 'log.st'
Score.weibullGH: no visible binding for global variable 'id.GK'
Score.weibullGH: no visible binding for global variable 'd'
Score.weibullGH: no visible binding for global variable 'ncz'
Score.weibullGH: no visible binding for global variable 'b'
Score.weibullGH: no visible binding for global variable 'k'
Score.weibullGH: no visible binding for global variable 'n'
Score.weibullGH: no visible binding for global variable 'wGH'
Score.weibullGH: no visible binding for global variable 'b2'
Score.weibullGH: no visible binding for global variable 'Z'
Score.weibullGH: no visible binding for global variable 'ZtZ'
Score.weibullGH: no visible binding for global variable 'ncx'
Score.weibullGH: no visible binding for global variable 'N'
Score.weibullGH: no visible binding for global variable 'st'
dynC.coxph: no visible binding for global variable 'B'
dynC.coxph: no visible binding for global variable 'verbose'
fn: no visible binding for global variable 'eta.yxi'
fn: no visible binding for global variable 'Z.ind.i'
fn: no visible binding for global variable 'ni'
fn: no visible binding for global variable 'i'
fn: no visible binding for global variable 'alpha'
fn: no visible binding for global variable 'eta.si'
fn: no visible binding for global variable 'Zsi'
fn: no visible binding for global variable 'GKk'
fn: no visible binding for global variable 'yi'
fn: no visible binding for global variable 'sigma'
fn: no visible binding for global variable 'd'
fn: no visible binding for global variable 'eta.tw1i'
fn: no visible binding for global variable 'eta.tw2i'
fn: no visible binding for global variable 'eta.yxT'
fn: no visible binding for global variable 'Ztime.i'
fn: no visible binding for global variable 'Pi'
fn: no visible binding for global variable 'wk'
fn: no visible binding for global variable 'eta.wsi'
fn: no visible binding for global variable 'diag.D'
gr: no visible binding for global variable 'Z.ind.i'
gr: no visible binding for global variable 'yi.eta.yxi'
gr: no visible binding for global variable 'sigma'
gr: no visible binding for global variable 'alpha'
gr: no visible binding for global variable 'eta.si'
gr: no visible binding for global variable 'Zsi'
gr: no visible binding for global variable 'GKk'
gr: no visible binding for global variable 'ncz'
gr: no visible binding for global variable 'd'
gr: no visible binding for global variable 'i'
gr: no visible binding for global variable 'Ztime.i'
gr: no visible binding for global variable 'eta.tw1i'
gr: no visible binding for global variable 'Pi'
gr: no visible binding for global variable 'wk'
gr: no visible binding for global variable 'eta.wsi'
gr: no visible binding for global variable 'diag.D'
gr.longAFTWB: no visible binding for global variable 'X'
gr.longAFTWB: no visible binding for global variable 'parameterization'
gr.longAFTWB: no visible binding for global variable 'Xs'
gr.longAFTWB: no visible binding for global variable 'Zsb'
gr.longAFTWB: no visible binding for global variable 'alpha'
gr.longAFTWB: no visible binding for global variable 'Xs.deriv'
gr.longAFTWB: no visible binding for global variable 'indFixed'
gr.longAFTWB: no visible binding for global variable 'Zsb.deriv'
gr.longAFTWB: no visible binding for global variable 'Dalpha'
gr.longAFTWB: no visible binding for global variable 'wk'
gr.longAFTWB: no visible binding for global variable 'eta.tw'
gr.longAFTWB: no visible binding for global variable 'P'
gr.longAFTWB: no visible binding for global variable 'y'
gr.longAFTWB: no visible binding for global variable 'Zb'
gr.longAFTWB: no visible binding for global variable 'sigma'
gr.longAFTWB: no visible binding for global variable 'id.GK'
gr.longAFTWB: no visible binding for global variable 'd'
gr.longAFTWB: no visible binding for global variable 'sigma.t'
gr.longAFTWB: no visible binding for global variable 'ncx'
gr.longAFTWB: no visible binding for global variable 'p.byt'
gr.longAFTWB: no visible binding for global variable 'wGH'
gr.longAFTWB: no visible binding for global variable 'Xtime'
gr.longAFTWB: no visible binding for global variable 'Xtime.deriv'
gr.longPC: no visible binding for global variable 'X'
gr.longPC: no visible binding for global variable 'parameterization'
gr.longPC: no visible binding for global variable 'Xs'
gr.longPC: no visible binding for global variable 'Zsb'
gr.longPC: no visible binding for global variable 'alpha'
gr.longPC: no visible binding for global variable 'Xs.deriv'
gr.longPC: no visible binding for global variable 'indFixed'
gr.longPC: no visible binding for global variable 'Zsb.deriv'
gr.longPC: no visible binding for global variable 'Dalpha'
gr.longPC: no visible binding for global variable 'eta.tw'
gr.longPC: no visible binding for global variable 'y'
gr.longPC: no visible binding for global variable 'Zb'
gr.longPC: no visible binding for global variable 'sigma'
gr.longPC: no visible binding for global variable 'xi'
gr.longPC: no visible binding for global variable 'ind.K'
gr.longPC: no visible binding for global variable 'wkP'
gr.longPC: no visible binding for global variable 'ncx'
gr.longPC: no visible binding for global variable 'id.GK'
gr.longPC: no visible binding for global variable 'p.byt'
gr.longPC: no visible binding for global variable 'wGH'
gr.longPC: no visible binding for global variable 'd'
gr.longPC: no visible binding for global variable 'Xtime'
gr.longPC: no visible binding for global variable 'Xtime.deriv'
gr.longPH: no visible binding for global variable 'X'
gr.longPH: no visible binding for global variable 'Xtime'
gr.longPH: no visible binding for global variable 'Xtime2'
gr.longPH: no visible binding for global variable 'Ztime.b'
gr.longPH: no visible binding for global variable 'Ztime2.b'
gr.longPH: no visible binding for global variable 'eta.tw'
gr.longPH: no visible binding for global variable 'alpha'
gr.longPH: no visible binding for global variable 'y'
gr.longPH: no visible binding for global variable 'Zb'
gr.longPH: no visible binding for global variable 'sigma'
gr.longPH: no visible binding for global variable 'lambda0'
gr.longPH: no visible binding for global variable 'ind.L1'
gr.longPH: no visible binding for global variable 'ncx'
gr.longPH: no visible binding for global variable 'n'
gr.longPH: no visible binding for global variable 'k'
gr.longPH: no visible binding for global variable 'unq.indT'
gr.longPH: no visible binding for global variable 'indT'
gr.longPH: no visible binding for global variable 'p.byt'
gr.longPH: no visible binding for global variable 'wGH'
gr.longPH: no visible binding for global variable 'd'
gr.longSplinePH: no visible binding for global variable 'X'
gr.longSplinePH: no visible binding for global variable
  'parameterization'
gr.longSplinePH: no visible binding for global variable 'Xs'
gr.longSplinePH: no visible binding for global variable 'Zsb'
gr.longSplinePH: no visible binding for global variable 'alpha'
gr.longSplinePH: no visible binding for global variable 'Xs.deriv'
gr.longSplinePH: no visible binding for global variable 'indFixed'
gr.longSplinePH: no visible binding for global variable 'Zsb.deriv'
gr.longSplinePH: no visible binding for global variable 'Dalpha'
gr.longSplinePH: no visible binding for global variable 'eta.tw1'
gr.longSplinePH: no visible binding for global variable 'P'
gr.longSplinePH: no visible binding for global variable 'y'
gr.longSplinePH: no visible binding for global variable 'Zb'
gr.longSplinePH: no visible binding for global variable 'sigma'
gr.longSplinePH: no visible binding for global variable 'wk'
gr.longSplinePH: no visible binding for global variable 'eta.ws'
gr.longSplinePH: no visible binding for global variable 'ncx'
gr.longSplinePH: no visible binding for global variable 'id.GK'
gr.longSplinePH: no visible binding for global variable 'p.byt'
gr.longSplinePH: no visible binding for global variable 'wGH'
gr.longSplinePH: no visible binding for global variable 'd'
gr.longSplinePH: no visible binding for global variable 'Xtime'
gr.longSplinePH: no visible binding for global variable 'Xtime.deriv'
gr.longWB: no visible binding for global variable 'X'
gr.longWB: no visible binding for global variable 'parameterization'
gr.longWB: no visible binding for global variable 'Xs'
gr.longWB: no visible binding for global variable 'Zsb'
gr.longWB: no visible binding for global variable 'alpha'
gr.longWB: no visible binding for global variable 'Xs.deriv'
gr.longWB: no visible binding for global variable 'indFixed'
gr.longWB: no visible binding for global variable 'Zsb.deriv'
gr.longWB: no visible binding for global variable 'Dalpha'
gr.longWB: no visible binding for global variable 'eta.tw'
gr.longWB: no visible binding for global variable 'P'
gr.longWB: no visible binding for global variable 'y'
gr.longWB: no visible binding for global variable 'Zb'
gr.longWB: no visible binding for global variable 'sigma'
gr.longWB: no visible binding for global variable 'wk'
gr.longWB: no visible binding for global variable 'sigma.t'
gr.longWB: no visible binding for global variable 'log.st'
gr.longWB: no visible binding for global variable 'ncx'
gr.longWB: no visible binding for global variable 'id.GK'
gr.longWB: no visible binding for global variable 'p.byt'
gr.longWB: no visible binding for global variable 'wGH'
gr.longWB: no visible binding for global variable 'd'
gr.longWB: no visible binding for global variable 'Xtime'
gr.longWB: no visible binding for global variable 'Xtime.deriv'
gr.survAFTWB: no visible binding for global variable 'list.thetas'
gr.survAFTWB: no visible binding for global variable 'scaleWB'
gr.survAFTWB: no visible binding for global variable 'WW'
gr.survAFTWB: no visible binding for global variable 'parameterization'
gr.survAFTWB: no visible binding for global variable 'Y'
gr.survAFTWB: no visible binding for global variable 'Y.deriv'
gr.survAFTWB: no visible binding for global variable 'Ys'
gr.survAFTWB: no visible binding for global variable 'Ys.deriv'
gr.survAFTWB: no visible binding for global variable 'wk'
gr.survAFTWB: no visible binding for global variable 'P'
gr.survAFTWB: no visible binding for global variable 'id.GK'
gr.survAFTWB: no visible binding for global variable 'd'
gr.survAFTWB: no visible binding for global variable 'p.byt'
gr.survAFTWB: no visible binding for global variable 'wGH'
gr.survPC: no visible binding for global variable 'list.thetas'
gr.survPC: no visible binding for global variable 'WW'
gr.survPC: no visible binding for global variable 'n'
gr.survPC: no visible binding for global variable 'parameterization'
gr.survPC: no visible binding for global variable 'Y'
gr.survPC: no visible binding for global variable 'Y.deriv'
gr.survPC: no visible binding for global variable 'Ys'
gr.survPC: no visible binding for global variable 'Ys.deriv'
gr.survPC: no visible binding for global variable 'wkP'
gr.survPC: no visible binding for global variable 'ind.K'
gr.survPC: no visible binding for global variable 'd'
gr.survPC: no visible binding for global variable 'p.byt'
gr.survPC: no visible binding for global variable 'id.GK'
gr.survPC: no visible binding for global variable 'wGH'
gr.survPC: no visible binding for global variable 'Q'
gr.survPC: no visible binding for global variable 'ind.D'
gr.survPH: no visible binding for global variable 'ncww'
gr.survPH: no visible binding for global variable 'WW'
gr.survPH: no visible binding for global variable 'n'
gr.survPH: no visible binding for global variable 'Y'
gr.survPH: no visible binding for global variable 'Y2'
gr.survPH: no visible binding for global variable 'lambda0'
gr.survPH: no visible binding for global variable 'ind.L1'
gr.survPH: no visible binding for global variable 'k'
gr.survPH: no visible binding for global variable 'unq.indT'
gr.survPH: no visible binding for global variable 'indT'
gr.survPH: no visible binding for global variable 'd'
gr.survPH: no visible binding for global variable 'p.byt'
gr.survPH: no visible binding for global variable 'wGH'
gr.survSplinePH: no visible binding for global variable 'list.thetas'
gr.survSplinePH: no visible binding for global variable 'W1'
gr.survSplinePH: no visible binding for global variable 'n'
gr.survSplinePH: no visible binding for global variable 'W2'
gr.survSplinePH: no visible binding for global variable
  'parameterization'
gr.survSplinePH: no visible binding for global variable 'Y'
gr.survSplinePH: no visible binding for global variable 'Y.deriv'
gr.survSplinePH: no visible binding for global variable 'Ys'
gr.survSplinePH: no visible binding for global variable 'Ys.deriv'
gr.survSplinePH: no visible binding for global variable 'W2s'
gr.survSplinePH: no visible binding for global variable 'P'
gr.survSplinePH: no visible binding for global variable 'wk'
gr.survSplinePH: no visible binding for global variable 'id.GK'
gr.survSplinePH: no visible binding for global variable 'p.byt'
gr.survSplinePH: no visible binding for global variable 'wGH'
gr.survSplinePH: no visible binding for global variable 'd'
gr.survSplinePH: no visible binding for global variable 'nk'
gr.survWB: no visible binding for global variable 'list.thetas'
gr.survWB: no visible binding for global variable 'scaleWB'
gr.survWB: no visible binding for global variable 'WW'
gr.survWB: no visible binding for global variable 'parameterization'
gr.survWB: no visible binding for global variable 'Y'
gr.survWB: no visible binding for global variable 'Y.deriv'
gr.survWB: no visible binding for global variable 'Ys'
gr.survWB: no visible binding for global variable 'Ys.deriv'
gr.survWB: no visible binding for global variable 'P'
gr.survWB: no visible binding for global variable 'wk'
gr.survWB: no visible binding for global variable 'log.st'
gr.survWB: no visible binding for global variable 'id.GK'
gr.survWB: no visible binding for global variable 'p.byt'
gr.survWB: no visible binding for global variable 'wGH'
gr.survWB: no visible binding for global variable 'd'
gr.survWB: no visible binding for global variable 'st'
gr.survWB: no visible binding for global variable 'logT'
h.b: no visible binding for global variable 'method'
h.b: no visible binding for global variable 'data.id'
h.b: no visible binding for global variable 'timeVar'
h.b: no visible binding for global variable 'object'
h.b: no visible binding for global variable 'TermsY'
h.b: no visible binding for global variable 'W'
h.b: no visible binding for global variable 'gammas.new'
h.b: no visible binding for global variable 'betas.new'
h.b: no visible binding for global variable 'sigma.t.new'
h.b: no visible binding for global variable 'alpha.new'
h.b: no visible binding for global variable 'survTimes'
h.b: no visible binding for global variable 'xi'
jointModel: no visible global function definition for 'chLaplace.fit'
log.posterior.b: no visible binding for global variable 'id'
log.posterior.b: no visible binding for global variable 'X'
log.posterior.b: no visible binding for global variable 'Z'
log.posterior.b: no visible binding for global variable 'betas.new'
log.posterior.b: no visible binding for global variable 'sigma.new'
log.posterior.b: no visible binding for global variable 'ncz'
log.posterior.b: no visible binding for global variable 'D.new'
log.posterior.b: no visible binding for global variable 'data.id'
log.posterior.b: no visible binding for global variable 'timeVar'
log.posterior.b: no visible binding for global variable 'object'
log.posterior.b: no visible binding for global variable 'TermsY'
log.posterior.b: no visible binding for global variable
  'parameterization'
log.posterior.b: no visible binding for global variable 'formYx'
log.posterior.b: no visible binding for global variable 'derivForm'
log.posterior.b: no visible binding for global variable 'betas'
log.posterior.b: no visible binding for global variable 'indFixed'
log.posterior.b: no visible binding for global variable 'indRandom'
log.posterior.b: no visible binding for global variable 'alpha.new'
log.posterior.b: no visible binding for global variable 'Dalpha.new'
log.posterior.b: no visible binding for global variable 'W'
log.posterior.b: no visible binding for global variable 'gammas.new'
log.posterior.b: no visible binding for global variable 'sigma.t.new'
log.posterior.b: no visible binding for global variable 'strt'
log.posterior.b : <anonymous>: no visible binding for global variable
  'object'
log.posterior.b: no visible binding for global variable 'gammas.bs.new'
log.posterior.b: no visible binding for global variable 'survTimes'
log.posterior.b: no visible binding for global variable 'Q'
log.posterior.b: no visible binding for global variable 'xi.new'
opt.longAFTWB: no visible binding for global variable 'X'
opt.longAFTWB: no visible binding for global variable
  'parameterization'
opt.longAFTWB: no visible binding for global variable 'Xtime'
opt.longAFTWB: no visible binding for global variable 'Ztime.b'
opt.longAFTWB: no visible binding for global variable 'Xs'
opt.longAFTWB: no visible binding for global variable 'Zsb'
opt.longAFTWB: no visible binding for global variable 'eta.tw'
opt.longAFTWB: no visible binding for global variable 'alpha'
opt.longAFTWB: no visible binding for global variable 'Xtime.deriv'
opt.longAFTWB: no visible binding for global variable 'indFixed'
opt.longAFTWB: no visible binding for global variable 'Ztime.b.deriv'
opt.longAFTWB: no visible binding for global variable 'Xs.deriv'
opt.longAFTWB: no visible binding for global variable 'Zsb.deriv'
opt.longAFTWB: no visible binding for global variable 'Dalpha'
opt.longAFTWB: no visible binding for global variable 'Ztb'
opt.longAFTWB: no visible binding for global variable 'y'
opt.longAFTWB: no visible binding for global variable 'sigma'
opt.longAFTWB: no visible binding for global variable 'id'
opt.longAFTWB: no visible binding for global variable 'P'
opt.longAFTWB: no visible binding for global variable 'wk'
opt.longAFTWB: no visible binding for global variable 'id.GK'
opt.longAFTWB: no visible binding for global variable 'sigma.t'
opt.longAFTWB: no visible binding for global variable 'd'
opt.longAFTWB: no visible binding for global variable 'p.byt'
opt.longAFTWB: no visible binding for global variable 'wGH'
opt.longPC: no visible binding for global variable 'X'
opt.longPC: no visible binding for global variable 'parameterization'
opt.longPC: no visible binding for global variable 'Xtime'
opt.longPC: no visible binding for global variable 'Ztime.b'
opt.longPC: no visible binding for global variable 'Xs'
opt.longPC: no visible binding for global variable 'Zsb'
opt.longPC: no visible binding for global variable 'eta.tw'
opt.longPC: no visible binding for global variable 'alpha'
opt.longPC: no visible binding for global variable 'Xtime.deriv'
opt.longPC: no visible binding for global variable 'indFixed'
opt.longPC: no visible binding for global variable 'Ztime.b.deriv'
opt.longPC: no visible binding for global variable 'Xs.deriv'
opt.longPC: no visible binding for global variable 'Zsb.deriv'
opt.longPC: no visible binding for global variable 'Dalpha'
opt.longPC: no visible binding for global variable 'Ztb'
opt.longPC: no visible binding for global variable 'y'
opt.longPC: no visible binding for global variable 'sigma'
opt.longPC: no visible binding for global variable 'id'
opt.longPC: no visible binding for global variable 'xi'
opt.longPC: no visible binding for global variable 'ind.D'
opt.longPC: no visible binding for global variable 'ind.K'
opt.longPC: no visible binding for global variable 'wkP'
opt.longPC: no visible binding for global variable 'id.GK'
opt.longPC: no visible binding for global variable 'd'
opt.longPC: no visible binding for global variable 'p.byt'
opt.longPC: no visible binding for global variable 'wGH'
opt.longPH: no visible binding for global variable 'X'
opt.longPH: no visible binding for global variable 'Xtime'
opt.longPH: no visible binding for global variable 'Xtime2'
opt.longPH: no visible binding for global variable 'Ztime.b'
opt.longPH: no visible binding for global variable 'Ztime2.b'
opt.longPH: no visible binding for global variable 'eta.tw'
opt.longPH: no visible binding for global variable 'alpha'
opt.longPH: no visible binding for global variable 'Ztb'
opt.longPH: no visible binding for global variable 'y'
opt.longPH: no visible binding for global variable 'sigma'
opt.longPH: no visible binding for global variable 'id'
opt.longPH: no visible binding for global variable 'lambda0'
opt.longPH: no visible binding for global variable 'ind.T0'
opt.longPH: no visible binding for global variable 'n'
opt.longPH: no visible binding for global variable 'k'
opt.longPH: no visible binding for global variable 'unq.indT'
opt.longPH: no visible binding for global variable 'ind.L1'
opt.longPH: no visible binding for global variable 'indT'
opt.longPH: no visible binding for global variable 'd'
opt.longPH: no visible binding for global variable 'p.byt'
opt.longPH: no visible binding for global variable 'wGH'
opt.longSplinePH: no visible binding for global variable 'X'
opt.longSplinePH: no visible binding for global variable
  'parameterization'
opt.longSplinePH: no visible binding for global variable 'Xtime'
opt.longSplinePH: no visible binding for global variable 'Ztime.b'
opt.longSplinePH: no visible binding for global variable 'Xs'
opt.longSplinePH: no visible binding for global variable 'Zsb'
opt.longSplinePH: no visible binding for global variable 'eta.tw2'
opt.longSplinePH: no visible binding for global variable 'eta.tw1'
opt.longSplinePH: no visible binding for global variable 'alpha'
opt.longSplinePH: no visible binding for global variable 'Xtime.deriv'
opt.longSplinePH: no visible binding for global variable 'indFixed'
opt.longSplinePH: no visible binding for global variable
  'Ztime.b.deriv'
opt.longSplinePH: no visible binding for global variable 'Xs.deriv'
opt.longSplinePH: no visible binding for global variable 'Zsb.deriv'
opt.longSplinePH: no visible binding for global variable 'Dalpha'
opt.longSplinePH: no visible binding for global variable 'Ztb'
opt.longSplinePH: no visible binding for global variable 'y'
opt.longSplinePH: no visible binding for global variable 'sigma'
opt.longSplinePH: no visible binding for global variable 'id'
opt.longSplinePH: no visible binding for global variable 'P'
opt.longSplinePH: no visible binding for global variable 'wk'
opt.longSplinePH: no visible binding for global variable 'eta.ws'
opt.longSplinePH: no visible binding for global variable 'id.GK'
opt.longSplinePH: no visible binding for global variable 'd'
opt.longSplinePH: no visible binding for global variable 'p.byt'
opt.longSplinePH: no visible binding for global variable 'wGH'
opt.longWB: no visible binding for global variable 'X'
opt.longWB: no visible binding for global variable 'parameterization'
opt.longWB: no visible binding for global variable 'Xtime'
opt.longWB: no visible binding for global variable 'Ztime.b'
opt.longWB: no visible binding for global variable 'Xs'
opt.longWB: no visible binding for global variable 'Zsb'
opt.longWB: no visible binding for global variable 'eta.tw'
opt.longWB: no visible binding for global variable 'alpha'
opt.longWB: no visible binding for global variable 'Xtime.deriv'
opt.longWB: no visible binding for global variable 'indFixed'
opt.longWB: no visible binding for global variable 'Ztime.b.deriv'
opt.longWB: no visible binding for global variable 'Xs.deriv'
opt.longWB: no visible binding for global variable 'Zsb.deriv'
opt.longWB: no visible binding for global variable 'Dalpha'
opt.longWB: no visible binding for global variable 'Ztb'
opt.longWB: no visible binding for global variable 'y'
opt.longWB: no visible binding for global variable 'sigma'
opt.longWB: no visible binding for global variable 'id'
opt.longWB: no visible binding for global variable 'sigma.t'
opt.longWB: no visible binding for global variable 'logT'
opt.longWB: no visible binding for global variable 'P'
opt.longWB: no visible binding for global variable 'wk'
opt.longWB: no visible binding for global variable 'log.st'
opt.longWB: no visible binding for global variable 'id.GK'
opt.longWB: no visible binding for global variable 'd'
opt.longWB: no visible binding for global variable 'p.byt'
opt.longWB: no visible binding for global variable 'wGH'
opt.survAFTWB: no visible binding for global variable 'list.thetas'
opt.survAFTWB: no visible binding for global variable 'scaleWB'
opt.survAFTWB: no visible binding for global variable 'WW'
opt.survAFTWB: no visible binding for global variable
  'parameterization'
opt.survAFTWB: no visible binding for global variable 'Y'
opt.survAFTWB: no visible binding for global variable 'Y.deriv'
opt.survAFTWB: no visible binding for global variable 'Ys'
opt.survAFTWB: no visible binding for global variable 'Ys.deriv'
opt.survAFTWB: no visible binding for global variable 'P'
opt.survAFTWB: no visible binding for global variable 'wk'
opt.survAFTWB: no visible binding for global variable 'id.GK'
opt.survAFTWB: no visible binding for global variable 'd'
opt.survAFTWB: no visible binding for global variable 'p.byt'
opt.survAFTWB: no visible binding for global variable 'wGH'
opt.survPC: no visible binding for global variable 'list.thetas'
opt.survPC: no visible binding for global variable 'WW'
opt.survPC: no visible binding for global variable 'parameterization'
opt.survPC: no visible binding for global variable 'Y'
opt.survPC: no visible binding for global variable 'Y.deriv'
opt.survPC: no visible binding for global variable 'Ys'
opt.survPC: no visible binding for global variable 'Ys.deriv'
opt.survPC: no visible binding for global variable 'ind.D'
opt.survPC: no visible binding for global variable 'ind.K'
opt.survPC: no visible binding for global variable 'wkP'
opt.survPC: no visible binding for global variable 'id.GK'
opt.survPC: no visible binding for global variable 'd'
opt.survPC: no visible binding for global variable 'p.byt'
opt.survPC: no visible binding for global variable 'wGH'
opt.survPH: no visible binding for global variable 'ncww'
opt.survPH: no visible binding for global variable 'WW'
opt.survPH: no visible binding for global variable 'n'
opt.survPH: no visible binding for global variable 'Y'
opt.survPH: no visible binding for global variable 'Y2'
opt.survPH: no visible binding for global variable 'lambda0'
opt.survPH: no visible binding for global variable 'ind.T0'
opt.survPH: no visible binding for global variable 'k'
opt.survPH: no visible binding for global variable 'unq.indT'
opt.survPH: no visible binding for global variable 'ind.L1'
opt.survPH: no visible binding for global variable 'indT'
opt.survPH: no visible binding for global variable 'd'
opt.survPH: no visible binding for global variable 'p.byt'
opt.survPH: no visible binding for global variable 'wGH'
opt.survSplinePH: no visible binding for global variable 'list.thetas'
opt.survSplinePH: no visible binding for global variable 'W1'
opt.survSplinePH: no visible binding for global variable 'n'
opt.survSplinePH: no visible binding for global variable 'W2'
opt.survSplinePH: no visible binding for global variable
  'parameterization'
opt.survSplinePH: no visible binding for global variable 'Y'
opt.survSplinePH: no visible binding for global variable 'Y.deriv'
opt.survSplinePH: no visible binding for global variable 'Ys'
opt.survSplinePH: no visible binding for global variable 'Ys.deriv'
opt.survSplinePH: no visible binding for global variable 'W2s'
opt.survSplinePH: no visible binding for global variable 'P'
opt.survSplinePH: no visible binding for global variable 'wk'
opt.survSplinePH: no visible binding for global variable 'id.GK'
opt.survSplinePH: no visible binding for global variable 'd'
opt.survSplinePH: no visible binding for global variable 'p.byt'
opt.survSplinePH: no visible binding for global variable 'wGH'
opt.survWB: no visible binding for global variable 'list.thetas'
opt.survWB: no visible binding for global variable 'scaleWB'
opt.survWB: no visible binding for global variable 'WW'
opt.survWB: no visible binding for global variable 'parameterization'
opt.survWB: no visible binding for global variable 'Y'
opt.survWB: no visible binding for global variable 'Y.deriv'
opt.survWB: no visible binding for global variable 'Ys'
opt.survWB: no visible binding for global variable 'Ys.deriv'
opt.survWB: no visible binding for global variable 'logT'
opt.survWB: no visible binding for global variable 'P'
opt.survWB: no visible binding for global variable 'wk'
opt.survWB: no visible binding for global variable 'log.st'
opt.survWB: no visible binding for global variable 'id.GK'
opt.survWB: no visible binding for global variable 'd'
opt.survWB: no visible binding for global variable 'p.byt'
opt.survWB: no visible binding for global variable 'wGH'
piecewiseAFTGH.fit: no visible binding for global variable 'nk'
posterior.b: no visible binding for global variable 'eta.yxT'
posterior.b: no visible binding for global variable 'Ztime.missO'
posterior.b: no visible binding for global variable 'eta.tw'
posterior.b: no visible binding for global variable 'alpha.new'
posterior.b: no visible binding for global variable 'eta.yx'
posterior.b: no visible binding for global variable 'Z.missO'
posterior.b: no visible binding for global variable 'id3.miss'
posterior.b: no visible binding for global variable 'y.missO'
posterior.b: no visible binding for global variable 'sigma.new'
posterior.b: no visible binding for global variable 'id.miss'
posterior.b: no visible binding for global variable 'method'
posterior.b: no visible binding for global variable 'n.missO'
posterior.b: no visible binding for global variable 'object'
posterior.b: no visible binding for global variable 'Xs.missO'
posterior.b: no visible binding for global variable 'betas.new'
posterior.b: no visible binding for global variable 'Zs.missO'
posterior.b: no visible binding for global variable 'sigma.t.new'
posterior.b: no visible binding for global variable 'logT.missO'
posterior.b: no visible binding for global variable 'log.st.missO'
posterior.b: no visible binding for global variable 'P.missO'
posterior.b: no visible binding for global variable 'd.missO'
posterior.b: no visible binding for global variable 'W2.missO'
posterior.b: no visible binding for global variable 'gammas.bs.new'
posterior.b: no visible binding for global variable 'W2s.missO'
posterior.b: no visible binding for global variable 'id.GK'
posterior.b: no visible binding for global variable 'xi.new'
posterior.b: no visible binding for global variable 'ind.D.missO'
posterior.b: no visible binding for global variable 'ind.K.missO'
posterior.b: no visible binding for global variable 'wkP.missO'
posterior.b: no visible binding for global variable 'gammas.new'
posterior.b: no visible binding for global variable 'nk'
posterior.b: no visible binding for global variable 'ncz'
posterior.b: no visible binding for global variable 'D.new'
posterior.b: no visible binding for global variable 'diag.D'
posterior.b: no visible binding for global variable 'k'
simulate.jointModel: no visible binding for global variable 'data.id'
splinePHLaplace.fit: no visible binding for global variable 'Zs'
splinePHLaplace.fit: no visible binding for global variable 'Xs'
splinePHLaplace.fit: no visible binding for global variable 'eta.tw'
splinePHLaplace.fit: no visible binding for global variable 'ncww'
splinePHLaplace.fit: no visible binding for global variable 'SclongCH'
splinePHLaplace.fit: no visible global function definition for
  'SclongCH'
splinePHLaplace.fit: no visible global function definition for
  'ScsurvCH'
splinePHLaplace.fit: no visible binding for global variable 'ScsurvCH'
splinePHLaplace.fit: no visible global function definition for
  'update.bCH'
splinePHLaplace.fit: no visible global function definition for
  'LogLik.chLaplace'
splinePHLaplace.fit: no visible binding for global variable
  'LogLik.chLaplace'
splinePHLaplace.fit: no visible binding for global variable
  'Score.chLaplace'
splinePHLaplace.fit: no visible binding for global variable 'kn'
update.logLik.Laplace: no visible binding for global variable 'n'
update.logLik.Laplace: no visible binding for global variable 'X'
update.logLik.Laplace: no visible binding for global variable 'Xtime'
update.logLik.Laplace: no visible binding for global variable 'Xs'
update.logLik.Laplace: no visible binding for global variable 'W1'
update.logLik.Laplace: no visible binding for global variable 'W2'
update.logLik.Laplace: no visible binding for global variable 'W2s'
update.logLik.Laplace: no visible binding for global variable 'ncz'
update.logLik.Laplace: no visible binding for global variable 'id'
update.logLik.Laplace: no visible binding for global variable 'id.GK'
update.logLik.Laplace: no visible binding for global variable 'y'
update.logLik.Laplace: no visible binding for global variable 'Z'
update.logLik.Laplace: no visible binding for global variable 'Ztime'
update.logLik.Laplace: no visible binding for global variable 'Zs'
update.logLik.Laplace: no visible binding for global variable 'logT'
update.logLik.Laplace: no visible binding for global variable 'P'
update.logLik.Laplace: no visible binding for global variable 'new.b'
update.logLik.Laplace: no visible binding for global variable 'ni'
update.logLik.Laplace: no visible binding for global variable 'GKk'
update.logLik.Laplace: no visible binding for global variable 'd'
update.logLik.Laplace: no visible binding for global variable 'wk'
update.logLik.Laplace: no visible binding for global variable 'diag.D'
update.logLik.Laplace: no visible binding for global variable
  'cons.logLik'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK