* using log directory 'd:/Rcompile/CRANpkg/local/2.10/Geneland.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* checking for file 'Geneland/DESCRIPTION' ... OK
* this is package 'Geneland' version '3.2.4'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Geneland' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'runs'
Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'probs'
Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'runs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'probs'
Geneland.GUI : run : RunmcmcFmodel : Output: no visible binding for
  global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
  assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
  variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
  assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
  variable 'probs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'runs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'runs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'pops'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'pops'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'probs'
Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'probs'
Geneland.GUI : SimnonIBD : runnonibd: no visible binding for '<<-'
  assignment to 'globaldiploidgenotypes'
Geneland.GUI : Convert : gltgp: no visible binding for global variable
  'globaldiploidgenotypes'
Geneland.GUI : SimIBD : runibd: no visible binding for '<<-' assignment
  to 'globaldiploidgenotypes'
Geneland.GUI : Nullify : gltgp: no visible binding for global variable
  'globaldiploidgenotypes'
Geneland.GUI : Nullify : gltgp: no visible binding for '<<-' assignment
  to 'globaldiploidgenotypes'
* checking Rd files ... NOTE
prepare_Rd: EstimateFreqNA.Rd:27: Dropping empty section \keyword
prepare_Rd: FormatGenotypes.Rd:36: Dropping empty section \keyword
prepare_Rd: Fstat.Rd:45: Dropping empty section \keyword
prepare_Rd: Fstat.output.Rd:37: Dropping empty section \keyword
prepare_Rd: Geneland-package.Rd:136: Dropping empty section \keyword
prepare_Rd: Geneland-package.Rd:138: Dropping empty section \seealso
prepare_Rd: Geneland-package.Rd:140: Dropping empty section \examples
prepare_Rd: Geneland.GUI.Rd:24: Dropping empty section \keyword
prepare_Rd: Geneland.GUI.Rd:15: Dropping empty section \details
prepare_Rd: Geneland.GUI.Rd:16: Dropping empty section \value
prepare_Rd: Geneland.GUI.Rd:19: Dropping empty section \note
prepare_Rd: Geneland.GUI.Rd:17: Dropping empty section \references
prepare_Rd: Geneland.GUI.Rd:20: Dropping empty section \seealso
prepare_Rd: MCMC.Rd:333: Dropping empty section \keyword
prepare_Rd: MCMC.Rd:328: Dropping empty section \examples
prepare_Rd: PlotDrift.Rd:22: Dropping empty section \keyword
prepare_Rd: PlotFreq.Rd:33: Dropping empty section \keyword
prepare_Rd: PlotFreqA.Rd:28: Dropping empty section \keyword
prepare_Rd: PlotTessDyn.Rd:22: Dropping empty section \keyword
prepare_Rd: PlotTessellation.Rd:26: Dropping empty section \keyword
prepare_Rd: Plotnpop.Rd:29: Dropping empty section \keyword
prepare_Rd: Plotntile.Rd:24: Dropping empty section \keyword
prepare_Rd: PostProcessChain.Rd:82: Dropping empty section \keyword
prepare_Rd: PostProcessMultChain.Rd:80: Dropping empty section \keyword
prepare_Rd: PosteriorMode.Rd:35: Dropping empty section \keyword
prepare_Rd: coordinates.Rd:14: Dropping empty section \keyword
prepare_Rd: coordinates.Rd:8: Dropping empty section \usage
prepare_Rd: coordinates.Rd:11: Dropping empty section \author
prepare_Rd: coordinates.Rd:12: Dropping empty section \references
prepare_Rd: genotypes.Rd:14: Dropping empty section \keyword
prepare_Rd: genotypes.Rd:8: Dropping empty section \usage
prepare_Rd: genotypes.Rd:11: Dropping empty section \author
prepare_Rd: genotypes.Rd:12: Dropping empty section \references
prepare_Rd: gl2gp.Rd:24: Dropping empty section \keyword
prepare_Rd: nullify.Rd:25: Dropping empty section \keyword
prepare_Rd: nullify.Rd:20: Dropping empty section \references
prepare_Rd: nullify.Rd:23: Dropping empty section \examples
prepare_Rd: show.simdata.Rd:59: Dropping empty section \keyword
prepare_Rd: show.simdata.Rd:49-51: Dropping empty section \details
prepare_Rd: show.simdata.Rd:57: Dropping empty section \note
prepare_Rd: show.simdata.Rd:58: Dropping empty section \examples
prepare_Rd: simFmodel.Rd:78: Dropping empty section \keyword
prepare_Rd: simdata.Rd:181: Dropping empty section \keyword
prepare_Rd: simdata.Rd:156: Dropping empty section \note
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK