* using log directory 'd:/Rcompile/CRANpkg/local/2.10/EquiNorm.Rcheck' * using R version 2.10.1 (2009-12-14) * using session charset: ISO8859-1 * checking for file 'EquiNorm/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'EquiNorm' version '1.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'EquiNorm' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE affy.norm.Mstep: no visible global function definition for 'lme' affy.norm.Mstep: no visible global function definition for 'fixed.effects' lda.cv.one: no visible global function definition for 'lda' new.knn: no visible global function definition for 'knn' train.cv: no visible global function definition for 'balancedFolds' train.knn.easy: no visible global function definition for 'knn.cv' train.pam: no visible global function definition for 'pamr.train' train.pam: no visible global function definition for 'pamr.cv' train.pam.bkup: no visible global function definition for 'pamr.train' train.pam.bkup: no visible global function definition for 'pamr.cv' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK