aldous.test |
Visualizing balance via scatter diagrams |
all.equal.treeshape |
Compare two objects of class treeshape |
as.phylo.treeshape |
Conversion among tree objects |
as.treeshape |
Conversion among tree objects |
carnivora.treeshape |
Phylogenetic trees from the TreeBASE database |
cladesize |
Compute the number of children of a randomly chosen node |
colless |
Compute the Colless' shape statistic on tree data |
colless.test |
Perform a test on the Yule or PDA hypothesis based on the Colless or the Sackin statistic |
cutreeshape |
Cut objects of class "treeshape" |
cytochromc |
Phylogenetic trees from the Pandit database |
dbtreeshape |
Collect trees from a database. |
hivtree.treeshape |
Phylogenetic Tree of 193 HIV-1 Sequences |
likelihood.test |
Test the Yule vs PDA null hypothesis on tree data. |
pandit |
Collect trees from a database. |
plot.treeshape |
Plot phylogenetic treeshapes. |
primates |
Phylogenetic trees from the TreeBASE database |
rbiased |
Generate a list of random binary trees according to a given model |
rhodopsin |
Phylogenetic trees from the Pandit database |
rpda |
Generate a list of random binary trees according to a given model |
rtreeshape |
Generate a list of random binary trees according to a given model |
ryule |
Generate a list of random binary trees according to a given model |
sackin |
Compute the Sackin's index of a tree |
sackin.test |
Perform a test on the Yule or PDA hypothesis based on the Colless or the Sackin statistic |
shape.statistic |
Computes the log of the likelihood ratio (yule/pda) of the given tree |
smaller.clade.spectrum |
Compute the smaller clade spectrum of a tree. |
spectrum.treeshape |
Compute the spectrum of a tree |
subtree.test |
Test the Yule or PDA hypothesis |
summary.treeshape |
Print a summary of an object of class "treeshape" |
tipsubtree |
Extract a subtree that contains pre-specified tip names or labels |
treebase |
Collect trees from a database. |
treeshape |
Builds an object of class treeshape |
universal.treeshape |
Universal phylogenetic tree of life |