Population Genetics

==.genotype	Genotype or Haplotype Objects.
==.haplotype	Genotype or Haplotype Objects.
allele	Extract Features of Genotype objects
allele.count.2.genotype	Undocumented functions
allele.count.genotype	Genotype or Haplotype Objects.
allele.names	Extract Features of Genotype objects
as.character.gene	Create and Manipulate Locus, Gene, and Marker Objects
as.character.locus	Create and Manipulate Locus, Gene, and Marker Objects
as.character.marker	Create and Manipulate Locus, Gene, and Marker Objects
as.factor	Undocumented functions
as.factor.allele.genotype	Undocumented functions
as.factor.default	Undocumented functions
as.factor.genotype	Undocumented functions
as.genotype	Genotype or Haplotype Objects.
as.genotype.allele.count	Genotype or Haplotype Objects.
as.genotype.character	Genotype or Haplotype Objects.
as.genotype.default	Genotype or Haplotype Objects.
as.genotype.factor	Genotype or Haplotype Objects.
as.genotype.genotype	Genotype or Haplotype Objects.
as.genotype.haplotype	Genotype or Haplotype Objects.
as.genotype.table	Genotype or Haplotype Objects.
as.haplotype	Genotype or Haplotype Objects.
binsearch	Binary Search
carrier	Extract Features of Genotype objects
carrier.genotype	Genotype or Haplotype Objects.
ci.balance	Experimental Function to Correct Confidence Intervals At or Near Boundaries of the Parameter Space by 'Sliding' the Interval on the Quantile Scale.
diseq	Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium
gene	Create and Manipulate Locus, Gene, and Marker Objects
genotype	Genotype or Haplotype Objects.
getgene	Create and Manipulate Locus, Gene, and Marker Objects
getlocus	Create and Manipulate Locus, Gene, and Marker Objects
getmarker	Create and Manipulate Locus, Gene, and Marker Objects
gregorius	Probability of Observing All Alleles with a Given Frequency in a Sample of a Specified Size.
haplotype	Genotype or Haplotype Objects.
heterozygote	Extract Features of Genotype objects
heterozygote.genotype	Genotype or Haplotype Objects.
homozygote	Extract Features of Genotype objects
homozygote.genotype	Genotype or Haplotype Objects.
HWE.chisq	Perform Chi-Square Test for Hardy-Weinberg Equilibrium
HWE.exact	Exact Test of Hardy-Weinberg Equilibrium for 2-Allele Markers
HWE.test	Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium
is.gene	Create and Manipulate Locus, Gene, and Marker Objects
is.genotype	Genotype or Haplotype Objects.
is.haplotype	Genotype or Haplotype Objects.
is.locus	Create and Manipulate Locus, Gene, and Marker Objects
is.marker	Create and Manipulate Locus, Gene, and Marker Objects
LD	Pairwise linkage disequilibrium between genetic markers.
LDplot	Textual and graphical display of linkage disequilibrium (LD) objects
LDtable	Textual and graphical display of linkage disequilibrium (LD) objects
library.pos	Loading and Listing of Packages (backported from 1.8.0)
locus	Create and Manipulate Locus, Gene, and Marker Objects
makeGenotypes	Convert columns in a dataframe to genotypes or haplotypes
makeHaplotypes	Convert columns in a dataframe to genotypes or haplotypes
marker	Create and Manipulate Locus, Gene, and Marker Objects
nallele	Genotype or Haplotype Objects.
plot.LD.data.frame	Textual and graphical display of linkage disequilibrium (LD) objects
print.allele.count	Genotype or Haplotype Objects.
print.allele.genotype	Genotype or Haplotype Objects.
print.carrier	Genotype or Haplotype Objects.
print.diseq	Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium
print.gene	Create and Manipulate Locus, Gene, and Marker Objects
print.genotype	Genotype or Haplotype Objects.
print.heterozygote	Genotype or Haplotype Objects.
print.homozygote	Genotype or Haplotype Objects.
print.HWE.test	Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium
print.LD	Textual and graphical display of linkage disequilibrium (LD) objects
print.locus	Create and Manipulate Locus, Gene, and Marker Objects
print.marker	Create and Manipulate Locus, Gene, and Marker Objects
print.summary.genotype	Allele and Genotype Frequency from a Genotype or Haplotype Object
print.summary.LD.data.frame	Textual and graphical display of linkage disequilibrium (LD) objects
shortsummary.genotype	Undocumented functions
summary.genotype	Allele and Genotype Frequency from a Genotype or Haplotype Object
summary.LD.data.frame	Textual and graphical display of linkage disequilibrium (LD) objects
write.marker.file	Create genetics data files
write.pedigree.file	Create genetics data files
write.pop.file	Create genetics data files
[.genotype	Genotype or Haplotype Objects.
[.haplotype	Genotype or Haplotype Objects.