Analysis of Environmental Data : Exploratory and Euclidean methods in Environmental sciences


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A B C D E F G H I J K L M N O P Q R S T U V W Y misc

-- A --

acm.burt Multiple Correspondence Analysis
acm.disjonctif Multiple Correspondence Analysis
add.position.triangle Triangular Plotting
add.scatter.eig Scatter Plot
ade4toR Format Change Utility
ardeche Fauna Table with double (row and column) partitioning
area.plot Graphical Display of Areas
area.util.contour Graphical Display of Areas
area.util.xy Graphical Display of Areas
area2link Graphical Display of Areas
area2poly Graphical Display of Areas
as.dudi Duality Diagram
as.randtest Class of the Permutation Tests (in C).
as.rtest Class of the Permutation Tests (in R).
atlas Small Ecological Dataset
avimedi Fauna Table for Constrained Ordinations
aviurba Ecological Tables Triplet

-- B --

bacteria Genomes of 43 Bacteria
banque Table of Factors
baran95 African Estuary Fishes
between Between-Class Analysis
bf88 Cubic Ecological Data
bicenter.wt Double Weighted Centring
bordeaux Wine Tasting
boxplot.acm Multiple Correspondence Analysis
bsetal97 Ecological and Biological Traits
butterfly Genetics-Ecology-Environment Triple

-- C --

c.ktab the class of objects 'ktab' (K-tables)
cailliez Transformation to make Euclidean a distance matrix
capitales Road Distances
cca Canonical Correspondence Analysis
chatcat Qualitative Weighted Variables
chats Pair of Variables
chazeb Charolais-Zebus
clementines Fruit Production
coinertia Coinertia Analysis
col.names the class of objects 'ktab' (K-tables)
coleo Table of Fuzzy Biological Traits

-- D --

deug Exam marks for some students
discrimin Linear Discriminant Analysis (descriptive statistic)
discrimin.coa Discriminant Correspondence Analysis
dist.binary Computation of Distance Matrices for Binary Data
dist.dudi Computation of the Distance Matrix of a Statistical Triplet
dist.neig Computation of the Distance Matrix associated to a Neighbouring Graph
dist.prop Computation of Distance Matrices of Percentage Data
dist.quant Computation of Distance Matrices on Quantitative Variables
dist2mat Is a Distance Matrix Euclidean ?
doubs Pair of Ecological Tables
dudi Duality Diagram
dudi.acm Multiple Correspondence Analysis
dudi.coa Correspondence Analysis
dudi.dec Decentred Correspondence Analysis
dudi.fca Fuzzy Correspondence Analysis
dudi.mix Ordination of Tables mixing quantitative variables and factors
dudi.nsc Non symmetric correspondence analysis
dudi.pca Principal Component Analysis
dudi.pco Principal Coordinates Analysis
dunedata Dune Meadow Data

-- E --

ecomor Ecomorphological Convergence
elec88 Electoral Data
escopage K-tables of wine-tasting
euro123 Triangular Data

-- F --

foucart K-tables Correspondence Analysis with the same rows and the same columns
friday87 Faunistic K-tables
fruits Pair of Tables

-- G --

granulo Granulometric Curves

-- H --

housetasks Contingency Table

-- I --

ichtyo Point sampling of fish community
inertia.dudi Statistics of inertia in a one-table analysis
irishdata Geary's Irish Data
is.dudi Duality Diagram
is.euclid Is a Distance Matrix Euclidean ?
is.ktab the class of objects 'ktab' (K-tables)

-- J --

jv73 K-tables Multi-Regions

-- K --

kplot Generic Function for Multiple Graphs in a K-tables Analysis
kplot.foucart Multiple Graphs for the Foucart's Correspondence Analysis
kplot.mcoa Multiple Graphs for a Multiple Co-inertia Analysis
kplot.mfa Multiple Graphs for a Multiple Factorial Analysis
kplot.pta Multiple Graphs for a Partial Triadic Analysis
kplot.sepan Multiple Graphs for Separed Analyses in a K-tables
kplot.statis Multiple Graphs of a STATIS Analysis
ktab the class of objects 'ktab' (K-tables)
ktab.data.frame Creation of K-tables from a data frame
ktab.list.df Creating a K-tables from a list of data frame.
ktab.list.dudi Creation of a K-tables from a list of duality diagrams
ktab.match2ktabs STATIS and Co-Inertia : Analysis of a series of paired ecological tables
ktab.util.names the class of objects 'ktab' (K-tables)
ktab.within Process to go from a Within Analysis to a K-tables

-- L --

lascaux Genetic/Environment and types of variables
lingoes Transformation of a Distance Matrix for becoming Euclidean

-- M --

macaca Landmarks
macon Wine Tasting
mafragh Phyto-Ecological Survey
mantel.randtest Mantel test (correlation between two distance matrices (in C).)
mantel.rtest Mantel test (correlation between two distance matrices (in R).)
mariages Correspondence Analysis Table
mat2dist Is a Distance Matrix Euclidean ?
mcoa Multiple CO-inertia Analysis
meau Ecological Data : sites-variables, sites-species, where and when
meaudret Ecological Data : sites-variables, sites-species, where and when
mfa Multiple Factorial Analysis
microsatt Genetic Relationships between cattle breeds with microsatellites
mollusc Faunistic Communities and Sampling Experiment
monde84 Global State of the World in 1984
morphosport Athletes' Morphology

-- N --

nb2neig Neighbourhood Graphs
neig Neighbourhood Graphs
neig.util.GtoL Neighbourhood Graphs
neig.util.LtoG Neighbourhood Graphs
neig2mat Neighbourhood Graphs
neig2nb Neighbourhood Graphs
niche Method to Analyse a pair of tables : Environmental and Faunistic Data

-- O --

olympic Olympic Decathlon
ours A table of Qualitative Variables

-- P --

pcaiv Principal component analysis with respect to instrumental variables
pcaivortho Principal Component Analysis with respect to orthogonal instrumental variables
pcoscaled Simplified Analysis in Principal Coordinates
perthi02 Contingency Table with a partition in Molecular Biology
plot.between Between-Class Analysis
plot.coinertia Coinertia Analysis
plot.discrimin Linear Discriminant Analysis (descriptive statistic)
plot.foucart K-tables Correspondence Analysis with the same rows and the same columns
plot.mcoa Multiple CO-inertia Analysis
plot.mfa Multiple Factorial Analysis
plot.niche Method to Analyse a pair of tables : Environmental and Faunistic Data
plot.pcaiv Principal component analysis with respect to instrumental variables
plot.procuste Simple Procruste Rotation between two sets of points
plot.pta Partial Triadic Analysis of a K-tables
plot.randtest Class of the Permutation Tests (in C).
plot.rtest Class of the Permutation Tests (in R).
plot.sepan Separated Analyses in a K-tables
plot.statis STATIS, a method for analysing K-tables
plot.within Within Analyses
poly2area Graphical Display of Areas
prep.fuzzy.var Fuzzy Correspondence Analysis
print.between Between-Class Analysis
print.coinertia Coinertia Analysis
print.discrimin Linear Discriminant Analysis (descriptive statistic)
print.dudi Duality Diagram
print.foucart K-tables Correspondence Analysis with the same rows and the same columns
print.ktab the class of objects 'ktab' (K-tables)
print.mcoa Multiple CO-inertia Analysis
print.mfa Multiple Factorial Analysis
print.neig Neighbourhood Graphs
print.niche Method to Analyse a pair of tables : Environmental and Faunistic Data
print.pcaiv Principal component analysis with respect to instrumental variables
print.procuste Simple Procruste Rotation between two sets of points
print.pta Partial Triadic Analysis of a K-tables
print.randtest Class of the Permutation Tests (in C).
print.rtest Class of the Permutation Tests (in R).
print.sepan Separated Analyses in a K-tables
print.statis STATIS, a method for analysing K-tables
print.within Within Analyses
procuste Simple Procruste Rotation between two sets of points
procuste.randtest Monte-Carlo Test on the sum of the singular values of a procustean rotation (in C).
procuste.rtest Monte-Carlo Test on the sum of the singular values of a procustean rotation (in R).
pta Partial Triadic Analysis of a K-tables

-- Q --

quasieuclid Transformation of a distance matrice to an Euclidean one

-- R --

randtest Class of the Permutation Tests (in C).
randtest.between Monte-Carlo Test on the between-groups inertia percentage (in C).
randtest.coinertia Monte-Carlo test on a coinertia analysis (in C).
randtest.discrimin Monte-Carlo Test on a Discriminant Analysis (in C).
rankrock Ordination Table
reconst Reconstitution of Data from a Duality Diagram
redo.dudi Duality Diagram
rhone Physico-Chemistry Data
row.names.ktab the class of objects 'ktab' (K-tables)
rpjdl Avifauna and Vegetation
rtest Class of the Permutation Tests (in R).
rtest.between Monte-Carlo Test on the between-groups inertia percentage (in R).
rtest.discrimin Monte-Carlo Test on a Discriminant Analysis (in R).
Rtoade4 Format Change Utility
RV.rtest Monte-Carlo Test on the sum of eigenvalues of a co-inertia analysis (in R).

-- S --

s.arrow Plot of the factorial maps for the projection of a vector basis
s.chull Plot of the factorial maps with polygons of contour by level of a factor
s.class Plot of factorial maps with representation of point classes
s.corcircle Plot of the factorial maps of a correlation circle
s.distri Plot of a frequency distribution
s.label Scatter Plot
s.match Plot of Paired Coordinates
s.traject Trajectory Plot
s.value Representation of a value in a graph
santacatalina Indirect Ordination
sarcelles Array of Recapture of Rings
scalewt Centring and Scaling a Matrix of Any Weighting
scatter Scatter Plot
scatter.acm Plot of the factorial maps in multiple correspondence analysis
scatter.coa Plot of the factorial maps for a correspondence analysis
scatter.dudi Plot of the Factorial Maps
scatter.fca Plot of the factorial maps for a fuzzy correspondence analysis
scatter.pco Principal Coordinates Analysis
scatterutil.base Scatter Plot
scatterutil.chull Scatter Plot
scatterutil.eigen Scatter Plot
scatterutil.ellipse Scatter Plot
scatterutil.eti Scatter Plot
scatterutil.grid Scatter Plot
scatterutil.legend.bw.square Scatter Plot
scatterutil.legend.square.grey Scatter Plot
scatterutil.legendgris Scatter Plot
scatterutil.scaling Scatter Plot
scatterutil.star Scatter Plot
scatterutil.sub Scatter Plot
sco.boxplot Representation of the link between a variable and a set of qualitative variables
sco.distri Representation by mean- standard deviation of a set of weight distributions on a numeric score
sco.quant Graph to Analyse the Relation between a Score and Quantitative Variables
score Graphs for One Dimension
score.acm Graphs to study one factor in a Multiple Correspondence Analysis
score.coa Graphs to analyse a factor in a correspondence analysis
score.mix Graphs to Analyse a factor in a Mixed Analysis
score.pca Graphs to Analyse a factor in PCA
scores.neig Neighbourhood Graphs
scoreutil.base Graphs for One Dimension
seconde Students and Subjects
sepan Separated Analyses in a K-tables
skulls Morphometric Evolution
statis STATIS, a method for analysing K-tables
steppe Transect in the Vegetation
summary.coinertia Coinertia Analysis
summary.dist Is a Distance Matrix Euclidean ?
summary.mcoa Multiple CO-inertia Analysis
summary.mfa Multiple Factorial Analysis
summary.neig Neighbourhood Graphs
summary.sepan Separated Analyses in a K-tables
summary.witwit Internal Correspondence Analysis
supcol Projections of Supplementary Columns
suprow Projections of Supplementary Rows
syndicats Two Questions asked on a Sample of 1000 Respondents

-- T --

t.dudi Duality Diagram
t.ktab the class of objects 'ktab' (K-tables)
tab.names the class of objects 'ktab' (K-tables)
table.cont Plot of Contingency Tables
table.dist Graph Display for Distance Matrices
table.paint Plot of the arrays by grey levels
table.prepare Plot of the Arrays
table.value Plot of the Arrays
tarentaise Mountain Avifauna
testdiscrimin Internal Permutation Tests functions (in C).
testertrace Internal Permutation Tests functions (in C).
testertracenu Internal Permutation Tests functions (in C).
testertracenubis Internal Permutation Tests functions (in C).
testinter Internal Permutation Tests functions (in C).
testmantel Internal Permutation Tests functions (in C).
testprocuste Internal Permutation Tests functions (in C).
tortues Morphological Study of the Painted Turtle
toxicity Homogeneous Table
triangle.biplot Triangular Plotting
triangle.param Triangular Plotting
triangle.plot Triangular Plotting
triangle.posipoint Triangular Plotting
trichometeo Pair of Ecological Data

-- U --

uniquewt.df Elimination of Duplicated Rows in a Array

-- V --

veuvage Example for Centring in PCA

-- W --

within Within Analyses
within.pca Normed within Principal Component Analysis
witwit.coa Internal Correspondence Analysis
worksurv French Worker Survey (1970)

-- Y --

yanomama Distance Matrices

-- misc --

[.ktab the class of objects 'ktab' (K-tables)