bootstrap.pml {phangorn}R Documentation

Bootstrap

Description

bootstrap.pml performs (non-parametric) bootstrap analysis and bootstrap.phyDat produces a list of bootstrapped datasets.

Usage

bootstrap.pml(x, bs = 3, trees = TRUE, ...)
bootstrap.phyDat(x, FUN, bs = 100, ...) 

Arguments

x an object of class pml or phyDat.
bs number of bootstrap samples.
trees return trees only (default) or whole pml objects.
... further parameters used by optim.pml.
FUN the function to estimate the trees.

Value

returns an object of class multi.phylo or a list where each element is an object of class pml.

Author(s)

Klaus Schliep klaus.schliep@gmail.com

See Also

optim.pml, pml


[Package phangorn version 0.99-3 Index]