bootstrap.pml {phangorn} | R Documentation |
bootstrap.pml
performs (non-parametric) bootstrap analysis and bootstrap.phyDat
produces a list of bootstrapped datasets.
bootstrap.pml(x, bs = 3, trees = TRUE, ...) bootstrap.phyDat(x, FUN, bs = 100, ...)
x |
an object of class pml or phyDat. |
bs |
number of bootstrap samples. |
trees |
return trees only (default) or whole pml objects. |
... |
further parameters used by optim.pml. |
FUN |
the function to estimate the trees. |
returns an object of class multi.phylo or a list where each element is an object of class pml.
Klaus Schliep klaus.schliep@gmail.com