simugeno {forensim} | R Documentation |
forensim class for simluated genotypes
Description
The S4 simugeno
class is used to store existing or simulated genotypes.
Slots
tab.freq
:- a list giving allele frequencies for each locus.
If there are several populations,
tab.freq
gives allele frequencies in each population
nind
:- integer vector giving the number of individuals. If there are several
populations,
nind
gives the numbers of individuals per population
pop.names
:- factor of populations names
popind
:- factor giving the population of each individual
which.loc
:- character vector giving the locus names
tab.geno
:- matrix giving the genotypes (in rows) for each locus (in columns).
The genotype of a homozygous individual carrying the allele "12" is coded "12/12". A heterozygous
individual carrying alleles "12" and "13" is coded "12/13" or "13/12".
indID
:- character vector giving the individuals ID
Methods
- names
signature(x = "simugeno")
: gives the names of the attributes of
a simugeno object
- show
signature(object = "simugeno")
: shows a simugeno object
- print
signature(object = "simugeno")
: prints a simugeno object
Author(s)
Hinda Haned haned@biomserv.univ-lyon1.fr
See Also
as.simugeno
for the simugeno class constructor,
is.simugeno
, simumix
and
tabfreq
Examples
showClass("simugeno")
[Package
forensim version 1.1-1
Index]