AromaUnitTabularBinaryFile {aroma.core} | R Documentation |
Package: aroma.core
Class AromaUnitTabularBinaryFile
Object
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GenericDataFile
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GenericTabularFile
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AromaTabularBinaryFile
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~~~~~~~~~~~~~~~~~+--
AromaPlatformInterface
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AromaMicroarrayTabularBinaryFile
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AromaUnitTabularBinaryFile
Directly known subclasses:
AromaUgpFile, AromaUnitChromosomeTabularBinaryFile
public abstract static class AromaUnitTabularBinaryFile
extends AromaMicroarrayTabularBinaryFile
A AromaUnitTabularBinaryFile is an AromaTabularBinaryFile
with
the constraint that the rows map one-to-one to, and in the same order as,
the units in a annotation chip type file (e.g. CDF file).
The (full) chip type of the annotation chip type file is given by the
mandatory file footer chipType
.
AromaUnitTabularBinaryFile(...)
... |
Arguments passed to AromaTabularBinaryFile . |
Methods:
allocateFromUnitAnnotationDataFile | - | |
allocateFromUnitNamesFile | - | |
byChipType | - | |
nbrOfUnits | - |
Methods inherited from AromaMicroarrayTabularBinaryFile:
allocate, as.character, byChipType, findByChipType, getChipType, getFilenameExtension, getPlatform
Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile
Methods inherited from AromaTabularBinaryFile:
[, [[, [<-, allocate, as.character, colMeans, colMedians, colStats, colSums, dimnames<-, getBytesPerColumn, getColClasses, getColumnNames, importFrom, lapply, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, readFooter, readHeader, readRawFooter, setAttributesByTags, subset, summary, updateData, updateDataColumn, writeFooter, writeRawFooter
Methods inherited from GenericTabularFile:
as.character, dim, extractMatrix, getColumnNames, getColumnNameTranslator, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, setColumnNameTranslator, translateColumnNames
Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)