AlleleSummation {aroma.affymetrix}R Documentation

The AlleleSummation class

Description

Package: aroma.affymetrix
Class AlleleSummation

Object
~~|
~~+--Model
~~~~~~~|
~~~~~~~+--UnitModel
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AlleleSummation

Directly known subclasses:

public abstract static class AlleleSummation
extends UnitModel

This class takes allele-specific chip effect estimates of a SnpChipEffectSet and returns a CnChipEffectSet holding the summed allele estimates.

Usage

AlleleSummation(dataSet=NULL, ignoreNAs=TRUE, ...)

Arguments

dataSet A SnpChipEffectSet.
ignoreNAs If TRUE, missing values are excluded when summing the signals from the two alleles.
... Arguments passed to UnitModel.

Fields and Methods

Methods:
findUnitsTodo -
getAsteriskTags -
getChipEffectSet Gets the set of chip effects for this model.
process -

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction

Methods inherited from Model:
fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]