getAlleleCellPairs.AffymetrixCdfFile {aroma.affymetrix}R Documentation

Gets the cell indices of allele pairs

Description

Gets the cell indices of allele pairs in units of type "genotyping" with 2 or 4 unit groups.

Usage

## S3 method for class 'AffymetrixCdfFile':
getAlleleCellPairs(this, units=NULL, stratifyBy=c("pm", "pmmm", "mm"), force=FALSE, ..., verbose=FALSE)

Arguments

units A integer vector of units to query. If NULL, all units are considered.
stratifyBy A character string specifying what type of probes to return.
... Not used.
verbose A logical or a Verbose object.

Value

Returns a Nx2 integer matrix of cell indices, where each row is a (PMA, PMB) probe pair.

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

For more information see AffymetrixCdfFile.


[Package aroma.affymetrix version 1.2.0 Index]