AffymetrixCnChpSet {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class AffymetrixCnChpSet
Object
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GenericDataFileSet
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AromaMicroarrayDataSet
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~~~~~~~~~~~~+--
AromaPlatformInterface
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~~~~~~~~~~~~~~~~~+--
AffymetrixFileSet
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AffymetrixCnChpSet
Directly known subclasses:
public abstract static class AffymetrixCnChpSet
extends AffymetrixFileSet
A AffymetrixCnChpSet object represents a set of AffymetrixCnChpFile:s with identical chip types.
AffymetrixCnChpSet(files=NULL, ...)
files |
A list of AffymetrixCnChpFile :s. |
... |
Not used. |
Methods:
as | - | |
as.AffymetrixCnChpSet | Coerce an object to an AffymetrixCnChpSet object. | |
byName | - | |
exportTotalCnRatioSet | - | |
extractLogRatios | - | |
findByName | - | |
fromFiles | - | |
getCdf | - | |
getFullName | - | |
nbrOfArrays | Gets the number of arrays in the file set. | |
setCdf | - |
Methods inherited from AffymetrixFileSet:
as, as.AffymetrixFileSet, fromFiles
Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile
Methods inherited from AromaMicroarrayDataSet:
getChipType, getPlatform, nbrOfArrays, setAttributesBy, setAttributesBySampleAnnotationFile, setAttributesBySampleAnnotationSet, validate
Methods inherited from GenericDataFileSet:
append, appendFiles, as.list, byName, clearCache, copyTo, equals, extract, findByName, fromFiles, getAlias, getFile, getFileClass, getFileSize, getFullName, getFullNames, getFullNameTranslator, getName, getNames, getPath, getPathnames, getTags, hasFile, hasTag, hasTags, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullName, setFullNamesTranslator, setFullNameTranslator, setName, setTags, update2, validate
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)