CnagCfhSet {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class CnagCfhSet
Object
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GenericDataFileSet
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CnagCfhSet
Directly known subclasses:
public static class CnagCfhSet
extends GenericDataFileSet
An CnagCfhSet object represents a set of CNAG CFH files with identical chip types.
CnagCfhSet(files=NULL, ...)
files |
A list of CnagCfhFile :s. |
... |
Not used. |
Methods:
[ | - | |
[[ | - | |
append | - | |
as | - | |
as.CnagCfhSet | Coerce an object to an CnagCfhSet object. | |
byName | - | |
findByName | - | |
fromFiles | - | |
getAverage | - | |
getAverageAsinh | - | |
getAverageFile | Calculates the mean and the standard deviation of the cell signal (intensity, standard deviation etc.) across the CFH set. | |
getAverageLog | - | |
getCdf | Gets the CDF structure for this CFH set. | |
getData | - | |
getFullName | - | |
getTimestamps | - | |
isDuplicated | Identifies duplicated CFH files. | |
nbrOfArrays | Gets the number of arrays in the file set. | |
range | - | |
readUnits | - | |
setCdf | Sets the CDF structure for this CFH set. |
Methods inherited from GenericDataFileSet:
append, appendFiles, as.list, byName, clearCache, copyTo, equals, extract, findByName, fromFiles, getAlias, getFile, getFileClass, getFileSize, getFullName, getFullNames, getFullNameTranslator, getName, getNames, getPath, getPathnames, getTags, hasFile, hasTag, hasTags, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullName, setFullNamesTranslator, setFullNameTranslator, setName, setTags, update2, validate
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)