getAlleleProbePairs3.AffymetrixCdfFile {aroma.affymetrix} | R Documentation |
Gets the indices of probepairs with the same pair of SNP nucleotides. Note that the order of allele A and allele B is irrelevant. For instance, all probepairs with nucleotides (A,T) are calibrated together with all probepairs with nucleotides (T,A) reversed.
## S3 method for class 'AffymetrixCdfFile': getAlleleProbePairs3(this, units=NULL, ignoreOrder=TRUE, force=FALSE, ..., verbose=FALSE)
verbose |
A logical or a Verbose object. |
... |
Not used. |
Returns a named list
where each element is a two-column matrix
where
the column names are the nucleotides for the two alleles.
On an IBM Thinkpad A31 with 1.8GHz and 1GB RAM:
Henrik Bengtsson (http://www.braju.com/R/)
For more information see AffymetrixCdfFile
.