UnitModel {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class UnitModel
Object
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Model
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UnitModel
Directly known subclasses:
AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel
public abstract static class UnitModel
extends Model
This class is abstract and represents a generic unit model, i.e. a model that is applied to each unit separately.
UnitModel(dataSet=NULL, probeModel=c("pm", "mm", "pm-mm", "min1(pm-mm)", "pm+mm"), shift=0, ...)
dataSet |
An AffymetrixCelSet to which this model should
be fitted. |
probeModel |
A character string specifying how PM and MM values
should be modelled. By default only PM signals are used. |
shift |
An optional amount the signals should be shifted (translated) before fitting the model. |
... |
Arguments passed to the constructor of Model . |
Methods:
findUnitsTodo | Identifies non-fitted units. | |
getFitSingleCellUnitFunction | - |
Methods inherited from Model:
fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)