ArrayExplorer {aroma.affymetrix}R Documentation

The ArrayExplorer class

Description

Package: aroma.affymetrix
Class ArrayExplorer

Object
~~|
~~+--Explorer
~~~~~~~|
~~~~~~~+--ArrayExplorer

Directly known subclasses:

public abstract static class ArrayExplorer
extends Explorer

Usage

ArrayExplorer(csTuple=NULL, ...)

Arguments

csTuple An AffymetrixCelSet object.
... Not used.

Fields and Methods

Methods:
addColorMap -
getAlias -
getAsteriskTags -
getColorMaps -
getDataSet Gets the data set.
getSetTuple -
nbrOfChipTypes -
process Generates image files, scripts and dynamic pages for the explorer.
setAlias -
setArrays Sets the arrays.
setColorMaps -

Methods inherited from Explorer:
addIncludes, addIndexFile, display, getAlias, getArrays, getArraysOfInput, getAsteriskTags, getFullName, getIncludePath, getMainPath, getName, getNameOfInput, getParallelSafe, getPath, getReportPathPattern, getSampleLayerPrefix, getSubname, getTags, getTagsOfInput, getTemplatePath, nbrOfArrays, process, setAlias, setArrays, setParallelSafe, setReportPathPattern, setSubname, setup, splitByReportPathPattern

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]