AffymetrixFileSet {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class AffymetrixFileSet
Object
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GenericDataFileSet
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AromaMicroarrayDataSet
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AromaPlatformInterface
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AffymetrixFileSet
Directly known subclasses:
AffymetrixCelSet, AffymetrixCnChpSet, ChipEffectSet, CnChipEffectSet, DChipDcpSet, ExonChipEffectSet, FirmaSet, ParameterCelSet, QualityAssessmentSet, ResidualSet, SnpChipEffectSet, WeightsSet
public abstract static class AffymetrixFileSet
extends AromaPlatformInterface
An AffymetrixFileSet object represents a set of AffymetrixFile
s
with identical chip types.
AffymetrixFileSet(files=NULL, ...)
files |
A list of AffymetrixFile :s. |
... |
Arguments passed to GenericDataFileSet . |
Methods:
as | - | |
as.AffymetrixFileSet | Coerce an object to an AffymetrixFileSet object. | |
fromFiles | Defines an AffymetrixFileSet object by searching for Affymetrix files. |
Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile
Methods inherited from AromaMicroarrayDataSet:
getChipType, getPlatform, nbrOfArrays, setAttributesBy, setAttributesBySampleAnnotationFile, setAttributesBySampleAnnotationSet, validate
Methods inherited from GenericDataFileSet:
append, appendFiles, as.list, byName, clearCache, copyTo, equals, extract, findByName, fromFiles, getAlias, getFile, getFileClass, getFileSize, getFullName, getFullNames, getFullNameTranslator, getName, getNames, getPath, getPathnames, getTags, hasFile, hasTag, hasTags, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullName, setFullNamesTranslator, setFullNameTranslator, setName, setTags, update2, validate
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)