AffymetrixCnChpSet {aroma.affymetrix}R Documentation

The AffymetrixCnChpSet class

Description

Package: aroma.affymetrix
Class AffymetrixCnChpSet

Object
~~|
~~+--GenericDataFileSet
~~~~~~~|
~~~~~~~+--AromaMicroarrayDataSet
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AromaPlatformInterface
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AffymetrixFileSet
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--AffymetrixCnChpSet

Directly known subclasses:

public abstract static class AffymetrixCnChpSet
extends AffymetrixFileSet

A AffymetrixCnChpSet object represents a set of AffymetrixCnChpFile:s with identical chip types.

Usage

AffymetrixCnChpSet(files=NULL, ...)

Arguments

files A list of AffymetrixCnChpFile:s.
... Not used.

Fields and Methods

Methods:
as -
as.AffymetrixCnChpSet Coerce an object to an AffymetrixCnChpSet object.
byName -
exportTotalCnRatioSet -
extractLogRatios -
findByName -
fromFiles -
getCdf -
getFullName -
nbrOfArrays Gets the number of arrays in the file set.
setCdf -

Methods inherited from AffymetrixFileSet:
as, as.AffymetrixFileSet, fromFiles

Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile

Methods inherited from AromaMicroarrayDataSet:
getChipType, getPlatform, nbrOfArrays, setAttributesBy, setAttributesBySampleAnnotationFile, setAttributesBySampleAnnotationSet, validate

Methods inherited from GenericDataFileSet:
append, appendFiles, as.list, byName, clearCache, copyTo, equals, extract, findByName, fromFiles, getAlias, getFile, getFileClass, getFileSize, getFullName, getFullNames, getFullNameTranslator, getName, getNames, getPath, getPathnames, getTags, hasFile, hasTag, hasTags, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullName, setFullNamesTranslator, setFullNameTranslator, setName, setTags, update2, validate

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

AffymetrixCnChpFile.


[Package aroma.affymetrix version 1.2.0 Index]