bgAdjustRma.AffymetrixCelFile {aroma.affymetrix}R Documentation

Applies normExp background correction to a CEL file

Description

Applies normExp background correction to a CEL file.

Calls bg.adjust from the affy package.

Usage

## S3 method for class 'AffymetrixCelFile':
bgAdjustRma(this, path=NULL, pmonly=TRUE, addJitter=FALSE, jitterSd=0.2, overwrite=FALSE, skip=!overwrite, ..., verbose=FALSE, .deprecated=TRUE)

Arguments

path The path where to save the adjusted data files.
overwrite If TRUE, already adjusted arrays are overwritten, unless skipped, otherwise an error is thrown.
skip If TRUE, the array is not normalized if it already exists.
verbose See Verbose.
... Not used.
.deprecated Internal argument.

Value

Returns the background adjusted AffymetrixCelFile object.

Author(s)

Ken Simpson (ksimpson[at]wehi.edu.au).

See Also

bg.adjust For more information see AffymetrixCelFile.


[Package aroma.affymetrix version 1.2.0 Index]