CnagCfhFile {aroma.affymetrix}R Documentation

The CnagCfhFile class

Description

Package: aroma.affymetrix
Class CnagCfhFile

Object
~~|
~~+--GenericDataFile
~~~~~~~|
~~~~~~~+--AromaMicroarrayDataFile
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AromaPlatformInterface
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AffymetrixFile
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--CnagCfhFile

Directly known subclasses:

public abstract static class CnagCfhFile
extends AffymetrixFile

A CnagCfhFile object represents a single CNAG CFH file.

Usage

CnagCfhFile(..., cdf=NULL)

Arguments

... Arguments passed to AromaMicroarrayDataFile.
cdf An optional AffymetrixCdfFile

Fields and Methods

Methods:
[ -
[[ -
clone -
fromFile Defines an CnagCfhFile object from a CFH file.
getCdf Gets the CDF structure for this CEL file.
nbrOfCells -
nbrOfSnps -
setCdf Sets the CDF structure for this CEL file.

Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile

Methods inherited from AromaMicroarrayDataFile:
getAttributeXY, getChipType, getPlatform, getPloidy, hasAttributeXY, setAttributesByTags, setAttributeXY

Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

An object of this class is typically part of an CnagCfhSet.


[Package aroma.affymetrix version 1.2.0 Index]