NormExpBackgroundCorrection {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class NormExpBackgroundCorrection
Object
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AromaTransform
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Transform
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ProbeLevelTransform
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BackgroundCorrection
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LimmaBackgroundCorrection
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NormExpBackgroundCorrection
Directly known subclasses:
public static class NormExpBackgroundCorrection
extends LimmaBackgroundCorrection
This class represents the normal exponential background correction model. Estimators of the limma package is used.
NormExpBackgroundCorrection(..., method=c("rma", "saddle", "mle"))
... |
Arguments passed to the constructor of
LimmaBackgroundCorrection . |
method |
The estimator used, cf. argument normexp.method
of backgroundCorrect in limma for more details. |
Methods:
No methods defined.
Methods inherited from LimmaBackgroundCorrection:
process
Methods inherited from BackgroundCorrection:
process
Methods inherited from Transform:
getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles
Methods inherited from AromaTransform:
getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson
Internally, backgroundCorrect
is used.