normalizeQuantile.AffymetrixCelFile {aroma.affymetrix} | R Documentation |
Normalizes the probe intensities to a target empirical distribution.
## S3 method for class 'AffymetrixCelFile': normalizeQuantile(this, path=file.path("normQuantile", getChipType(this)), xTarget, subsetToUpdate=NULL, typesToUpdate=NULL, ..., overwrite=FALSE, skip=!overwrite, verbose=FALSE)
path |
The path where to save the normalized data files. |
xTarget |
A numeric vector . The empirical distribution
to which all arrays should be normalized to. |
subsetToUpdate |
The indices of the probes to be updated.
If NULL , all are updated. |
typesToUpdate |
Types of probes to be updated. For more details,
see argument types of identifyCells() for the
AffymetrixCdfFile class. |
... |
Additional arguments passed to normalizeQuantile() . |
overwrite |
If TRUE , already normalized arrays are overwritten,
unless skipped, otherwise an error is thrown. |
skip |
If TRUE , the array is not normalized if it already exists. |
verbose |
See Verbose . |
Returns the normalized AffymetrixCelFile
object.
Henrik Bengtsson (http://www.braju.com/R/)
normalizeQuantile.numeric
For more information see AffymetrixCelFile
.