GcContentNormalization {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class GcContentNormalization
Object
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AromaTransform
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Transform
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ChipEffectTransform
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GcContentNormalization
Directly known subclasses:
public static class GcContentNormalization
extends ChipEffectTransform
GcContentNormalization(dataSet=NULL, ..., targetFunction=NULL, subsetToFit=NULL)
dataSet |
A CnChipEffectSet . |
... |
Additional arguments passed to the constructor of
ChipEffectTransform . |
targetFunction |
A function . The target function to which all arrays
should be normalized to. |
subsetToFit |
The units from which the normalization curve should
be estimated. If NULL , all are considered. |
Methods:
getCdf | - | |
getOutputDataSet00 | - | |
process | Normalizes the data set. |
Methods inherited from Transform:
getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles
Methods inherited from AromaTransform:
getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
This class requires an Aroma unit GC-content (UGC) file.
Henrik Bengtsson (http://www.braju.com/R/)