AvgCnPlm {aroma.affymetrix}R Documentation

The AvgCnPlm class

Description

Package: aroma.affymetrix
Class AvgCnPlm

Object
~~|
~~+--Model
~~~~~~~|
~~~~~~~+--UnitModel
~~~~~~~~~~~~|
~~~~~~~~~~~~+--MultiArrayUnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ProbeLevelModel
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--AvgPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AvgSnpPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--SnpPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--CnPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AvgCnPlm

Directly known subclasses:

public static class AvgCnPlm
extends CnPlm

Usage

AvgCnPlm(..., combineAlleles=FALSE)

Arguments

... Arguments passed to AvgSnpPlm.
combineAlleles If FALSE, allele A and allele B are treated seperately, otherwise together.

Fields and Methods

Methods:
No methods defined.

Methods inherited from CnPlm:
getCellIndices, getChipEffectSet, getCombineAlleles, getProbeAffinityFile, setCombineAlleles

Methods inherited from SnpPlm:
getCellIndices, getChipEffectSet, getMergeStrands, getProbeAffinityFile, setMergeStrands

Methods inherited from AvgSnpPlm:
getAsteriskTags

Methods inherited from AvgPlm:
getAsteriskTags, getCalculateResidualsFunction, validate

Methods inherited from ProbeLevelModel:
calculateResidualSet, calculateWeights, fit, getAsteriskTags, getCalculateResidualsFunction, getChipEffectSet, getProbeAffinityFile, getResidualSet, getWeightsSet

Methods inherited from MultiArrayUnitModel:
getListOfPriors, setListOfPriors, validate

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction

Methods inherited from Model:
fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]