plotDensity.AffymetrixCelSet {aroma.affymetrix} | R Documentation |
Plots the densities of all samples.
## S3 method for class 'AffymetrixCelSet': plotDensity(this, subset=NULL, types=NULL, ..., col=seq(this), lty=NULL, lwd=NULL, annotate=TRUE, add=FALSE, verbose=FALSE)
subset |
The subset of probes to considered before any
filtering by probe type is applied.
If a vector of double s, the cell indices.
If a scalar double in [0,1], the fraction of cells, which can
be used to speed up the plotting if approximate densities are
acceptable.
if NULL , all cells are considered.
|
types |
The type of probes to include, e.g. "all" ,
"pmmm" , "pm" , and "mm" . |
... |
Additional arguments passed to
plotDensity.AffymetrixCelFile (). |
col |
A vector of colors for each of the arrays. |
lty |
A vector of line types for each of the arrays. |
lwd |
A vector of line widths for each of the arrays. |
add |
If FALSE , a new plot is created, otherwise the generated
graphics is added to the current plot. |
Returns nothing.
Henrik Bengtsson (http://www.braju.com/R/)
For more information see AffymetrixCelSet
.