SnpChipEffectGroupMerge {aroma.affymetrix}R Documentation

The SnpChipEffectGroupMerge class

Description

Package: aroma.affymetrix
Class SnpChipEffectGroupMerge

Object
~~|
~~+--AromaTransform
~~~~~~~|
~~~~~~~+--Transform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--ChipEffectTransform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ChipEffectGroupMerge
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--SnpChipEffectGroupMerge

Directly known subclasses:

public static class SnpChipEffectGroupMerge
extends ChipEffectGroupMerge

This class represents a method that merges SNP chip effects across groups unit by unit.

Usage

SnpChipEffectGroupMerge(..., mergeStrands=FALSE, mean=c("arithmetic", "geometric"))

Arguments

... Arguments passed to the constructor of ChipEffectGroupMerge.
mergeStrands If TRUE, group strands are merged.
mean A character string specifying what type of averaging should be applied.

Fields and Methods

Methods:
getAsteriskTags -
getMergeFunction -

Methods inherited from ChipEffectGroupMerge:
getCdf, getMergeFunction, process, setMergeFunction

Methods inherited from Transform:
getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles

Methods inherited from AromaTransform:
getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]