SpatialReporter {aroma.affymetrix}R Documentation

The SpatialReporter class

Description

Package: aroma.affymetrix
Class SpatialReporter

Object
~~|
~~+--GenericReporter
~~~~~~~|
~~~~~~~+--AffymetrixFileSetReporter
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AffymetrixCelSetReporter
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--SpatialReporter

Directly known subclasses:

public abstract static class SpatialReporter
extends AffymetrixCelSetReporter

A SpatialReporter generates image files of spatial representations of cell signals for each of the arrays in the input set.

Usage

SpatialReporter(..., reference=NULL)

Arguments

... Arguments passed to AffymetrixCelSetReporter.
reference An optional reference AffymetrixCelFile.

Fields and Methods

Methods:
addColorMap -
calculateMargins -
getColorMaps -
plotMargins -
process Generates image files, scripts and dynamic pages for the explorer.
readRawDataRectangle -
setColorMaps -

Methods inherited from AffymetrixCelSetReporter:
getChipType, getDataSet, getPath, nbrOfArrays

Methods inherited from AffymetrixFileSetReporter:
getFileSet, getInputName, getInputTags

Methods inherited from GenericReporter:
getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getTags, process, setAlias, setup

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]