GcRmaBackgroundCorrection {aroma.affymetrix}R Documentation

The GcRmaBackgroundCorrection class

Description

Package: aroma.affymetrix
Class GcRmaBackgroundCorrection

Object
~~|
~~+--AromaTransform
~~~~~~~|
~~~~~~~+--Transform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--ProbeLevelTransform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--BackgroundCorrection
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--GcRmaBackgroundCorrection

Directly known subclasses:

public static class GcRmaBackgroundCorrection
extends BackgroundCorrection

This class represents the GCRMA background adjustment function.

Usage

GcRmaBackgroundCorrection(..., indicesNegativeControl=NULL, affinities=NULL, type="fullmodel", opticalAdjust=TRUE, gsbAdjust=TRUE, gsbParameters=NULL)

Arguments

... Arguments passed to the constructor of ProbeLevelTransform.
indicesNegativeControl
affinities
type
opticalAdjust
gsbAdjust
gsbParameters

Fields and Methods

Methods:
process Performs background correction.

Methods inherited from BackgroundCorrection:
process

Methods inherited from Transform:
getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles

Methods inherited from AromaTransform:
getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Ken Simpson (ksimpson[at]wehi.edu.au).


[Package aroma.affymetrix version 1.2.0 Index]