HetLogAddPlm {aroma.affymetrix}R Documentation

The HetLogAddPlm class

Description

Package: aroma.affymetrix
Class HetLogAddPlm

Object
~~|
~~+--Model
~~~~~~~|
~~~~~~~+--UnitModel
~~~~~~~~~~~~|
~~~~~~~~~~~~+--MultiArrayUnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ProbeLevelModel
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--RmaPlm
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--HetLogAddPlm

Directly known subclasses:
HetLogAddCnPlm, HetLogAddSnpPlm

public static class HetLogAddPlm
extends RmaPlm

This class represents a log-additive model similar to the one described in Irizarry et al (2003), except that the errors may have different variances for different probes.

Usage

HetLogAddPlm(...)

Arguments

... Arguments passed to RmaPlm.

Fields and Methods

Methods:
getAsteriskTags -

Methods inherited from RmaPlm:
getAsteriskTags, getCalculateResidualsFunction

Methods inherited from ProbeLevelModel:
calculateResidualSet, calculateWeights, fit, getAsteriskTags, getCalculateResidualsFunction, getChipEffectSet, getProbeAffinityFile, getResidualSet, getWeightsSet

Methods inherited from MultiArrayUnitModel:
getListOfPriors, setListOfPriors, validate

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction

Methods inherited from Model:
fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

RmaPlm.


[Package aroma.affymetrix version 1.2.0 Index]