SmoothMultiarrayModel {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class SmoothMultiarrayModel
Object
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ChromosomalModel
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SmoothMultiarrayModel
Directly known subclasses:
SmoothRmaModel, SmoothSaModel
public abstract static class SmoothMultiarrayModel
extends ChromosomalModel
This abstract class represents a chromosomal smoothing method done chromosome by chromosome.
SmoothMultiarrayModel(..., typoOfWeights=c("none", "1/s2"), bandwidth=10000, tags="*")
... |
Arguments passed to the constructor of ChromosomalModel . |
typoOfWeights |
A character string. |
bandwidth |
A single numeric specifying the smoothing bandwidth
in units of nucleotides. |
tags |
A character vector of tags to be added. |
Methods:
clearCache | - | |
createOutputTuple | - | |
fitOneChromosome | - | |
getBandwidth | - | |
getFitUnitGroupFunction | - | |
getOutputTuple | - | |
getRootPath | - | |
setBandwidth | - |
Methods inherited from ChromosomalModel:
as.character, clearCache, fit, getAlias, getArrays, getAsteriskTags, getChipEffectFiles, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getListOfChipEffectSets, getListOfGenomeInformations, getName, getNames, getParentPath, getPath, getPcuTheta, getPositionChipTypeUnit, getReportPath, getRootPath, getSetTuple, getTableOfArrays, getTags, nbrOfArrays, nbrOfChipTypes, setAlias, setGenome
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)