GenomeInformation {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class GenomeInformation
Object
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GenericDataFile
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GenomeInformation
Directly known subclasses:
AffymetrixCsvGenomeInformation, DChipGenomeInformation, UgpGenomeInformation
public abstract static class GenomeInformation
extends GenericDataFile
GenomeInformation(..., .verify=TRUE)
... |
Arguments passed to GenericDataFile . |
.verify |
For internal use only. |
Methods:
byChipType | Static method to define a genome information set by chip type. | |
fromCdf | Static method to define a genome information set from a CDF. | |
fromDataSet | - | |
getChipType | Gets the chip type of this genome information set. | |
getChromosomes | - | |
getChromosomeStats | - | |
getData | Gets all or a subset of the genome information data. | |
getPositions | Gets the physical positions for a set of units. | |
getUnitsOnChromosome | - | |
getUnitsOnChromosomes | - | |
nbrOfUnits | - | |
plotDensity | Plots the density of SNPs for a given chromosome. |
Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)