CrlmmParametersFile {aroma.affymetrix}R Documentation

The CrlmmParametersFile class

Description

Package: aroma.affymetrix
Class CrlmmParametersFile

Object
~~|
~~+--GenericDataFile
~~~~~~~|
~~~~~~~+--GenericTabularFile
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AromaTabularBinaryFile
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AromaPlatformInterface
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--AromaUnitSignalBinaryFile
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--CrlmmParametersFile

Directly known subclasses:

public static class CrlmmParametersFile
extends AromaUnitSignalBinaryFile

An CrlmmParametersFile is a AromaUnitSignalBinaryFile.

Usage

CrlmmParametersFile(...)

Arguments

... Arguments passed to AromaUnitSignalBinaryFile.

Fields and Methods

Methods:
allocate -
findUnitsTodo -
readParameter -
updateParameter -

Methods inherited from AromaUnitSignalBinaryFile:
allocate, allocateFromUnitAnnotationDataFile, allocateFromUnitNamesFile, as.character, extractMatrix, extractRawGenomicSignals, fromFile, getAromaUgpFile, getChipType, getFilenameExtension, getPlatform, nbrOfUnits, readDataFrame

Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile

Methods inherited from AromaTabularBinaryFile:
[, [[, [<-, allocate, as.character, colMeans, colMedians, colStats, colSums, dimnames<-, getBytesPerColumn, getColClasses, getColumnNames, importFrom, lapply, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, readFooter, readHeader, readRawFooter, setAttributesByTags, subset, summary, updateData, updateDataColumn, writeFooter, writeRawFooter

Methods inherited from GenericTabularFile:
as.character, dim, extractMatrix, getColumnNames, getColumnNameTranslator, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, setColumnNameTranslator, translateColumnNames

Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]