AffymetrixFile {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class AffymetrixFile
Object
~~|
~~+--
GenericDataFile
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~~~~~~~+--
AromaMicroarrayDataFile
~~~~~~~~~~~~|
~~~~~~~~~~~~+--
AromaPlatformInterface
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--
AffymetrixFile
Directly known subclasses:
AffymetrixCdfFile, AffymetrixCelFile, AffymetrixCnChpFile, AffymetrixTsvFile, AromaChipTypeAnnotationFile, ChipEffectFile, CnagCfhFile, CnChipEffectFile, CnProbeAffinityFile, DChipCdfBinFile, DChipDcpFile, ExonChipEffectFile, ExonProbeAffinityFile, FirmaFile, ParameterCelFile, ProbeAffinityFile, QualityAssessmentFile, ResidualFile, SnpChipEffectFile, SnpProbeAffinityFile, WeightsFile
public abstract static class AffymetrixFile
extends AromaPlatformInterface
An AffymetrixFile object represents a single Affymetrix file,
e.g. an Affymetrix CEL file or an Affymetrix CDF file.
Note that this class is abstract and can not be instanciated, but
instead you have to use one of the subclasses or the generic
fromFile()
method.
AffymetrixFile(...)
... |
Arguments passed to GenericDataFile . |
Methods:
No methods defined.
Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile
Methods inherited from AromaMicroarrayDataFile:
getAttributeXY, getChipType, getPlatform, getPloidy, hasAttributeXY, setAttributesByTags, setAttributeXY
Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)
An object of this class is typically part of an AffymetrixFileSet
.