UgpGenomeInformation {aroma.affymetrix}R Documentation

The UgpGenomeInformation class

Description

Package: aroma.affymetrix
Class UgpGenomeInformation

Object
~~|
~~+--GenericDataFile
~~~~~~~|
~~~~~~~+--GenomeInformation
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UgpGenomeInformation

Directly known subclasses:

public static class UgpGenomeInformation
extends GenomeInformation

This class represents Aroma UGP genome information files.

Usage

UgpGenomeInformation(..., .ugp=NULL, .verify=TRUE)

Arguments

... Arguments passed to GenomeInformation.
.ugp For internal use only.
.verify For internal use only.

Fields and Methods

Methods:
byChipType Defines a UgpGenomeInformation object by chip type.
clearCache -
getChipType -
getChromosomes -
getData -
getUnitsOnChromosome -
isCompatibleWithCdf -
nbrOfUnits -
readDataFrame -

Methods inherited from GenomeInformation:
byChipType, fromCdf, fromDataSet, getChipType, getChromosomes, getChromosomeStats, getData, getPositions, getUnitIndices, getUnitsOnChromosome, getUnitsOnChromosomes, isCompatibleWithCdf, nbrOfUnits, plotDensity, readDataFrame

Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]