Model {aroma.affymetrix}R Documentation

The Model class

Description

Package: aroma.affymetrix
Class Model

Object
~~|
~~+--Model

Directly known subclasses:
AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, CrlmmModel, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel, UnitModel

public abstract static class Model
extends Object

This class is abstract and represents a generic model that applies to a data set.

Usage

Model(dataSet=NULL, tags="*", ...)

Arguments

dataSet The data set to which this model should be fitted.
tags A character vector of tags to be appended to the tags of the input data set.
... Not used.

Fields and Methods

Methods:
fit Estimates the model parameters.
getAlias Gets the name alias for the model.
getAsteriskTags -
getDataSet Gets the input data set for this model.
getFullName Gets the full name of the output set.
getName Gets the name of the output data set.
getPath Gets the path of this model.
getRootPath Gets the root path of this model.
getTags Gets the tags of the output data set.
setAlias Sets the name alias for the model.
setTags Sets the tags to be appended.

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]