bgAdjustRma.AffymetrixCelSet {aroma.affymetrix} | R Documentation |
Applies RMA background correction to a set of CEL files.
Adapted from bg.adjust
in the affy package.
## S3 method for class 'AffymetrixCelSet': bgAdjustRma(this, path=NULL, tags="RBC", pmonly=TRUE, addJitter=FALSE, jitterSd=0.2, overwrite=FALSE, skip=!overwrite, ..., verbose=FALSE, .deprecated=TRUE)
path |
The path where to save the adjusted data files. |
name |
Name of the set containing the background corrected files. |
overwrite |
If TRUE , already adjusted arrays are overwritten,
unless skipped, otherwise an error is thrown. |
skip |
If TRUE , the array is not normalized if it already exists. |
verbose |
See Verbose . |
... |
Not used. |
.deprecated |
Internal argument. |
Returns the background adjusted AffymetrixCelFile
object.
Ken Simpson (ksimpson[at]wehi.edu.au).
bg.adjust
For more information see AffymetrixCelSet
.