SpatialReporter {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class SpatialReporter
Object
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GenericReporter
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AffymetrixFileSetReporter
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AffymetrixCelSetReporter
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SpatialReporter
Directly known subclasses:
public abstract static class SpatialReporter
extends AffymetrixCelSetReporter
A SpatialReporter generates image files of spatial representations of cell signals for each of the arrays in the input set.
SpatialReporter(..., reference=NULL)
... |
Arguments passed to AffymetrixCelSetReporter . |
reference |
An optional reference AffymetrixCelFile . |
Methods:
addColorMap | - | |
calculateMargins | - | |
getColorMaps | - | |
plotMargins | - | |
process | Generates image files, scripts and dynamic pages for the explorer. | |
readRawDataRectangle | - | |
setColorMaps | - |
Methods inherited from AffymetrixCelSetReporter:
getChipType, getDataSet, getPath, nbrOfArrays
Methods inherited from AffymetrixFileSetReporter:
getFileSet, getInputName, getInputTags
Methods inherited from GenericReporter:
getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getTags, process, setAlias, setup
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)