calculateBaseline.ChipEffectSet {aroma.affymetrix} | R Documentation |
Estimates the baseline signal chromosome by chromosome.
## S3 method for class 'ChipEffectSet': calculateBaseline(this, chromosomes=NULL, ploidy=2, defaultPloidy=NA, all=FALSE, force=FALSE, verbose=FALSE, ...)
chromosomes |
An integer vector specifying for which chromsosomes
the baseline should be estimated.
If NULL , all chromosomes are considered. |
ploidy |
An integer specifying the ploidy that the baseline
should have. |
defaultPloidy |
An integer specifying the default ploidy of
chromosomes that have not explicitly been allocated one. |
all |
If TRUE , signals are averaged also for cells that are not
on the genome. |
force |
If TRUE , the CEL file that stores the is recreated. |
verbose |
See Verbose . |
... |
Not used. |
Henrik Bengtsson (http://www.braju.com/R/)
getAverageFile
().
For more information see ChipEffectSet
.