GcContentNormalization2 {aroma.affymetrix}R Documentation

The GcContentNormalization2 class

Description

Package: aroma.affymetrix
Class GcContentNormalization2

Object
~~|
~~+--AromaTransform
~~~~~~~|
~~~~~~~+--Transform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--ChipEffectTransform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AdditiveCovariatesNormalization
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--GcContentNormalization2

Directly known subclasses:

public static class GcContentNormalization2
extends AdditiveCovariatesNormalization

This class represents a normalization method that corrects for annotation-data covariate effects on copy-number chip-effect estimates.

Usage

GcContentNormalization2(...)

Arguments

... Arguments passed to the constructor of AdditiveCovariatesNormalization.

Fields and Methods

Methods:
plotCovariateEffects -

Methods inherited from AdditiveCovariatesNormalization:
clearCache, getCdf, getCovariates, getOutputDataSet00, process

Methods inherited from Transform:
getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles

Methods inherited from AromaTransform:
getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.affymetrix version 1.2.0 Index]