FirmaModel {aroma.affymetrix} | R Documentation |
Package: aroma.affymetrix
Class FirmaModel
Object
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Model
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UnitModel
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FirmaModel
Directly known subclasses:
public static class FirmaModel
extends UnitModel
This class represents the FIRMA (Finding Isoforms using RMA) alternative splicing model.
FirmaModel(rmaPlm=NULL, summaryMethod=c("median", "upperQuartile", "max"), operateOn=c("residuals", "weights"), ...)
rmaPlm |
An @RmaPlm object. |
summaryMethod |
A character specifying what summarization method should be used. |
operateOn |
A character specifying what statistic to operate on. |
... |
Arguments passed to constructor of UnitModel . |
Methods:
calculateResidualSet | Gets the set of residuals corresponding to the PLM. | |
calculateWeights | - | |
fit | Estimates the model parameters. | |
getAsteriskTags | - | |
getCdf | - | |
getDataSet | - | |
getFirmaScores | - | |
getFirmaSet | Gets the set of FIRMA results for this model. | |
getFitUnitGroupFunction | Static method to get the low-level function that fits the PLM. | |
getName | - | |
getPlm | - | |
getTags | - |
Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction
Methods inherited from Model:
fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Ken Simpson (ksimpson[at]wehi.edu.au).