SmoothMultiarrayModel {aroma.affymetrix}R Documentation

The SmoothMultiarrayModel class

Description

Package: aroma.affymetrix
Class SmoothMultiarrayModel

Object
~~|
~~+--ChromosomalModel
~~~~~~~|
~~~~~~~+--SmoothMultiarrayModel

Directly known subclasses:
SmoothRmaModel, SmoothSaModel

public abstract static class SmoothMultiarrayModel
extends ChromosomalModel

This abstract class represents a chromosomal smoothing method done chromosome by chromosome.

Usage

SmoothMultiarrayModel(..., typoOfWeights=c("none", "1/s2"), bandwidth=10000, tags="*")

Arguments

... Arguments passed to the constructor of ChromosomalModel.
typoOfWeights A character string.
bandwidth A single numeric specifying the smoothing bandwidth in units of nucleotides.
tags A character vector of tags to be added.

Fields and Methods

Methods:
clearCache -
createOutputTuple -
fitOneChromosome -
getBandwidth -
getFitUnitGroupFunction -
getOutputTuple -
getRootPath -
setBandwidth -

Methods inherited from ChromosomalModel:
as.character, clearCache, fit, getAlias, getArrays, getAsteriskTags, getChipEffectFiles, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getListOfChipEffectSets, getListOfGenomeInformations, getName, getNames, getParentPath, getPath, getPcuTheta, getPositionChipTypeUnit, getReportPath, getRootPath, getSetTuple, getTableOfArrays, getTags, nbrOfArrays, nbrOfChipTypes, setAlias, setGenome

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

CopyNumberSegmentationModel.


[Package aroma.affymetrix version 1.2.0 Index]