NormExpBackgroundCorrection {aroma.affymetrix}R Documentation

The NormExpBackgroundCorrection class

Description

Package: aroma.affymetrix
Class NormExpBackgroundCorrection

Object
~~|
~~+--AromaTransform
~~~~~~~|
~~~~~~~+--Transform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--ProbeLevelTransform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--BackgroundCorrection
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--LimmaBackgroundCorrection
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--NormExpBackgroundCorrection

Directly known subclasses:

public static class NormExpBackgroundCorrection
extends LimmaBackgroundCorrection

This class represents the normal exponential background correction model. Estimators of the limma package is used.

Usage

NormExpBackgroundCorrection(..., method=c("rma", "saddle", "mle"))

Arguments

... Arguments passed to the constructor of LimmaBackgroundCorrection.
method The estimator used, cf. argument normexp.method of backgroundCorrect in limma for more details.

Fields and Methods

Methods:
No methods defined.

Methods inherited from LimmaBackgroundCorrection:
process

Methods inherited from BackgroundCorrection:
process

Methods inherited from Transform:
getOutputDataSet, getOutputDataSetOLD20090509, getOutputFiles

Methods inherited from AromaTransform:
getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getTags, isDone, process, setTags

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson

See Also

Internally, backgroundCorrect is used.


[Package aroma.affymetrix version 1.2.0 Index]