clusteringCoefficient {PCIT}R Documentation

Calculate the clustering coefficient for each node/gene of an adjacency matrix

Description

The clustering coefficient is defined as the proportion of existing connections from the total possible (Watts and Strogatz, 1998).

Usage

  clusteringCoefficient(adj)

Arguments

adj - An adjacency matrix. Calculating the clustering coefficient only makes sense if some connections are zero i.e. no connection.

Value

A vector of clustering coefficients for each node/gene of the adjacency matrix.

Author(s)

Nathan S. Watson-Haigh

References

D.J. Watts and S.H. Strogatz. (1998) Collective dynamics of 'small-world' networks. Nature. 393(6684). 440-442.


[Package PCIT version 1.01-1 Index]