LIMCoralRockall {LIM}R Documentation

Linear inverse model specification for the Deep-water Coral food web at Rockall Bank

Description

Linear inverse model specification for the deep-water coral ecosystem at Rockall Bank, North-East Atlantic. See van Oevelen et al. (2009)

Units of the flows are mmol C/m2/day

The linear inverse model LIMCoralRockall is generated from the file ‘CWCRockall.input’ which can be found in subdirectory /examples/FoodWeb of the package directory

Usage

data(LIMCoralRockall)

Format

a list of matrices, vectors, names and values that specify the linear inverse model problem.

see the return value of Setup for more information about this list

A more complete description of this structure is in vignette("LIM")

Author(s)

Dick van Oevelen<d.vanoevelen@nioo.knaw.nl>

Karline Soetaert <k.soetaert@nioo.knaw.nl>

References

van Oevelen, Dick, Gerard Duineveld, Marc Lavaleye, Furu Mienis, Karline Soetaert, and Carlo H. R. Heip, 2009.

The cold-water coral community as hotspot of carbon cycling on continental margins: A food web analysis from Rockall Bank (northeast Atlantic). Limnology and Oceanography, in press.

See Also

browseURL(paste(system.file(package="LIM"), "/examples/Foodweb/", sep=""))

contains "CWCRockall.input", the input file; read this with Setup

LIMTakapoto, LIMRigaSummer and many others

Examples

Coral <- Flowmatrix(LIMCoralRockall)

plotweb(Coral,main="Deep Water Coral Foodweb, Rockall Bank",
        sub="mmolC/m2/day",lab.size=0.8)

## Not run: 
xr <- LIMCoralRockall$NUnknowns
i1 <- 1:(xr/2)
i2 <- (xr/2+1):xr

pm <- par(mfrow=c(1,1))
Simplest <- Ldei(LIMCoralRockall)$X
Ranges <- Xranges(LIMCoralRockall)
Plotranges(Ranges[i1,1],Ranges[i1,2],Simplest[i1],lab.cex=0.7,
        main="Deep Water Coral - ranges part 1")

Plotranges(Ranges[i2,1],Ranges[i2,2],Simplest[i2],lab.cex=0.7,
        main="Deep Water Coral - ranges part 2")
par(mfrow=pm)
## End(Not run)

[Package LIM version 1.4 Index]